mRNA_Ecto-sp8_S_contig99132.31768.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99132.31768.1
Unique NamemRNA_Ecto-sp8_S_contig99132.31768.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Match: A0A6H5KZW9_9PHAE (XRN_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZW9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.550e-27
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query:    7 YQGVKFYISGANVPGEGELKCIDWLKHMPKPDESAVIVGGDADLILQGLALS 162
            YQGVKFYISGANVPGEGELKCIDWLKHMPKPDESAVIVGGDADLILQGLALS
Sbjct:  154 YQGVKFYISGANVPGEGELKCIDWLKHMPKPDESAVIVGGDADLILQGLALS 205          
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Match: A0A7S0E673_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E673_9CRYP)

HSP 1 Score: 65.1 bits (157), Expect = 1.310e-11
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 CSYQGVKFYISGANVPGEGELKCIDWLKHM--PKPDESAVIVGGDADLILQGLAL 159
              ++ V FYISG++V GEGE+K IDW+ ++   + D+  +IVGGDADL+LQGLA+
Sbjct:  111 AKFRNVAFYISGSDVAGEGEIKIIDWIHNLLHSQNDDRLIIVGGDADLVLQGLAV 165          
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Match: L1JQ07_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQ07_GUITC)

HSP 1 Score: 65.9 bits (159), Expect = 1.550e-11
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 CSYQGVKFYISGANVPGEGELKCIDWLKHM--PKPDESAVIVGGDADLILQGLAL 159
              ++ V FYISGA+V GEGE+K I+W+ ++   + DE  +IVGGDADL+LQGLA+
Sbjct:  101 AKFKNVAFYISGADVAGEGEIKIIEWIHNLLQNQNDEKIIIVGGDADLVLQGLAV 155          
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Match: M1US37_CYAM1 (XRN_N domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1US37_CYAM1)

HSP 1 Score: 62.0 bits (149), Expect = 7.440e-10
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    7 YQGVKFYISGANVPGEGELKCIDWLKHMPKPDESAVIVGGDADLILQGLA 156
            YQ V+F +SG  VPGEGE+K ID++     P  S V++G DADL++ GLA
Sbjct:  148 YQNVRFVVSGPTVPGEGEIKIIDYIHRYVDPQHSVVVIGSDADLVVLGLA 197          
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Match: A0A2V3J5K0_9FLOR (5'-3' exoribonuclease 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5K0_9FLOR)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-9
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    7 YQGVKFYISGANVPGEGELKCIDWLKHMPKPD-ESAVIVGGDADLILQGLA 156
            Y+ V+  ISGA+VPGEGELK ID+ +    P  +S V+VGGDAD++LQGLA
Sbjct:  158 YRNVEIRISGADVPGEGELKLIDFCRTAQIPSTDSVVVVGGDADIVLQGLA 208          
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Match: A0A7J7IHE6_9RHOD (XRN_N domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHE6_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 2.600e-9
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    7 YQGVKFYISGANVPGEGELKCIDWLKHMPKPDESAVIVGGDADLILQGLA 156
            Y+ ++F +SG  VPGEGE+K ID++    +P  S +++G DADL+L GLA
Sbjct:  148 YRNLRFVVSGPTVPGEGEIKIIDYIHRCVEPHHSVIVIGSDADLVLLGLA 197          
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Match: A0A1Z5KRK4_FISSO (5'-3' exoribonuclease 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRK4_FISSO)

HSP 1 Score: 60.1 bits (144), Expect = 3.560e-9
Identity = 28/58 (48.28%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 CSYQGVKFYISGANVPGEGELKCIDWL-KHMPKP---DESAVIVGGDADLILQGLALS 162
            C  +GV  YIS ++VPGEGE+K ++WL +H  +P   +ES   +GGDADL+++GL L+
Sbjct:  202 CLPEGVHVYISPSSVPGEGEVKLLEWLYRHTSRPHQINESVAFLGGDADLVVEGLMLN 259          
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Match: A0A1Z5JMH0_FISSO (5'-3' exoribonuclease 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMH0_FISSO)

HSP 1 Score: 58.9 bits (141), Expect = 9.100e-9
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 CSYQGVKFYISGANVPGEGELKCIDWL-KHMPKP---DESAVIVGGDADLILQGLALS 162
            C  +GV  YIS ++ PGEGE+K ++WL +H  +P   +ES  ++GGDADL+++GL L+
Sbjct:  179 CLPEGVHVYISPSSAPGEGEVKLLEWLYRHASQPHQINESVALLGGDADLVVEGLMLN 236          
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Match: A0A7S4K324_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K324_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.150e-8
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    4 SYQGVKFYISGANVPGEGELKCIDWL-----KHMPKPDESAVIVGGDADLILQGLAL 159
            S  GV+ YIS + VPGEGE+K +DWL       +  P  S  I+GGD+DL++QGL +
Sbjct:  349 SRSGVRVYISPSAVPGEGEVKLLDWLYQASAARVVLPSHSVAILGGDSDLVVQGLVV 405          
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Match: A0A1E7F0Q6_9STRA (XRN_N domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0Q6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.760e-7
Identity = 22/51 (43.14%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   16 VKFYISGANVPGEGELKCIDWLKHM-----PKPDESAVIVGGDADLILQGL 153
            V+ YIS ++VPGEGE+K ++W+ +       KP +S  ++GGDADL+L+ +
Sbjct:  113 VRIYISSSSVPGEGEIKLLEWINNYRGHLSTKPGQSIALIGGDADLLLEAM 163          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99132.31768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZW9_9PHAE2.550e-27100.00XRN_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S0E673_9CRYP1.310e-1152.73Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
L1JQ07_GUITC1.550e-1154.55Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
M1US37_CYAM17.440e-1052.00XRN_N domain-containing protein n=1 Tax=Cyanidiosc... [more]
A0A2V3J5K0_9FLOR1.390e-958.825'-3' exoribonuclease 1 n=1 Tax=Gracilariopsis cho... [more]
A0A7J7IHE6_9RHOD2.600e-948.00XRN_N domain-containing protein n=1 Tax=Cyanidioco... [more]
A0A1Z5KRK4_FISSO3.560e-948.285'-3' exoribonuclease 1 n=1 Tax=Fistulifera solari... [more]
A0A1Z5JMH0_FISSO9.100e-946.555'-3' exoribonuclease 1 n=1 Tax=Fistulifera solari... [more]
A0A7S4K324_9STRA8.150e-847.37Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A1E7F0Q6_9STRA1.760e-743.14XRN_N domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99132contigEcto-sp8_S_contig99132:333..494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score111.3
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D7G8V1
Model size162
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
Cds size162
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145360.3153412-CDS-Ecto-sp8_S_contig99132:332..4941681145360.3153412-CDS-Ecto-sp8_S_contig99132:332..494Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99132 333..494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99132.31768.1prot_Ecto-sp8_S_contig99132.31768.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99132 333..494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99132.31768.1

>prot_Ecto-sp8_S_contig99132.31768.1 ID=prot_Ecto-sp8_S_contig99132.31768.1|Name=mRNA_Ecto-sp8_S_contig99132.31768.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
CSYQGVKFYISGANVPGEGELKCIDWLKHMPKPDESAVIVGGDADLILQG
LALS
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mRNA from alignment at Ecto-sp8_S_contig99132:333..494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99132.31768.1 ID=mRNA_Ecto-sp8_S_contig99132.31768.1|Name=mRNA_Ecto-sp8_S_contig99132.31768.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99132:333..494+ (Ectocarpus species8 EcLAC_412)
TGCAGTTATCAAGGTGTCAAGTTTTACATTTCTGGAGCGAACGTGCCGGG CGAAGGGGAGCTAAAGTGCATTGATTGGTTGAAGCATATGCCCAAGCCTG ACGAAAGTGCGGTGATTGTAGGTGGCGATGCCGATTTGATACTCCAGGGA CTCGCTCTCAGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99132:333..494+

>mRNA_Ecto-sp8_S_contig99132.31768.1 ID=mRNA_Ecto-sp8_S_contig99132.31768.1|Name=mRNA_Ecto-sp8_S_contig99132.31768.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99132:333..494+ (Ectocarpus species8 EcLAC_412)
TGCAGTTATCAAGGTGTCAAGTTTTACATTTCTGGAGCGAACGTGCCGGG
CGAAGGGGAGCTAAAGTGCATTGATTGGTTGAAGCATATGCCCAAGCCTG
ACGAAAGTGCGGTGATTGTAGGTGGCGATGCCGATTTGATACTCCAGGGA
CTCGCTCTCAGT
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