mRNA_Ecto-sp8_S_contig9911.31764.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9911.31764.1
Unique NamemRNA_Ecto-sp8_S_contig9911.31764.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9911.31764.1 vs. uniprot
Match: D8LMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM4_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 2.280e-68
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 1 
Query:    1 MDKKPHGATGGDDQDAPFEDPEDAVGFGARTLLQRLPSKTFCTA---ATGAWIKTKTCTIACSTRVGKDGTQPDILRAMHMHVLFIVLGANGFEGVMEVLGAWRLSVGPLPWIPLCSVARQR 357
            MDK PHGATGGDDQDAPFEDPEDAVGFGAR LLQRLP+KT+ TA   ATGAWIKTK CTIACSTRVGKDGTQPD L AMHMHVLF+ LG NGFEGVMEVLGA RLSVGPLP IPLCSVARQR
Sbjct:    1 MDKNPHGATGGDDQDAPFEDPEDAVGFGARRLLQRLPTKTYGTAGNQATGAWIKTKDCTIACSTRVGKDGTQPDTLHAMHMHVLFVALGVNGFEGVMEVLGAGRLSVGPLPLIPLCSVARQR 122
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BLAST of mRNA_Ecto-sp8_S_contig9911.31764.1 vs. uniprot
Match: D8LKZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ3_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 4.520e-19
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MDKKPHGATGGDDQDAPFEDPEDAVGFGARTLLQRLPSKTFCTA 132
            MDK PHGATGGDDQDAPFEDPEDAVGFGAR LLQRLP+KT CTA
Sbjct:    1 MDKNPHGATGGDDQDAPFEDPEDAVGFGARRLLQRLPTKTCCTA 44
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BLAST of mRNA_Ecto-sp8_S_contig9911.31764.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.310e-12
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3 
Query:   12 ASRCYGRGRPGRALRRPGGCCGFWSSDVAAAAAIEDVLHS 131
            ASRCYGRGR GRALRRPGGC GFWSS+VAA AA E+VLHS
Sbjct:  323 ASRCYGRGRLGRALRRPGGCRGFWSSEVAATAANENVLHS 362
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9911.31764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMM4_ECTSI2.280e-6886.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKZ3_ECTSI4.520e-1990.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRZ1_ECTSI2.310e-1285.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9911contigEcto-sp8_S_contig9911:4134..5458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons2
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145360.1420937-CDS-Ecto-sp8_S_contig9911:4133..42661681145360.1420937-CDS-Ecto-sp8_S_contig9911:4133..4266Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9911 4134..4266 +
1681145360.1541877-CDS-Ecto-sp8_S_contig9911:5234..54581681145360.1541877-CDS-Ecto-sp8_S_contig9911:5234..5458Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9911 5235..5458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9911.31764.1prot_Ecto-sp8_S_contig9911.31764.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9911 4134..5458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9911.31764.1

>prot_Ecto-sp8_S_contig9911.31764.1 ID=prot_Ecto-sp8_S_contig9911.31764.1|Name=mRNA_Ecto-sp8_S_contig9911.31764.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=119bp
MDKKPHGATGGDDQDAPFEDPEDAVGFGARTLLQRLPSKTFCTAATGAWI
KTKTCTIACSTRVGKDGTQPDILRAMHMHVLFIVLGANGFEGVMEVLGAW
RLSVGPLPWIPLCSVARQR
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mRNA from alignment at Ecto-sp8_S_contig9911:4134..5458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9911.31764.1 ID=mRNA_Ecto-sp8_S_contig9911.31764.1|Name=mRNA_Ecto-sp8_S_contig9911.31764.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1325bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9911:4134..5458+ (Ectocarpus species8 EcLAC_412)
ATGGACAAAAAGCCTCACGGTGCTACGGGAGGGGACGACCAGGACGCGCC
CTTCGAAGACCCGGAGGATGCTGTGGGTTTTGGAGCTCGGACGTTGCTGC
AGCGGCTGCCATCGAAGACGTTCTGCACAGCAGGTGAGCTCTTTCTCCAC
ATCAGGAGATACGGCATACGCGTGCTGCAGTAGCACAGGAGTGTAGATCG
CTACGTGGAATGCAGCAGCCTTGGGATGCAGTACAAGGTTTGGGTTGTGG
ACGGCCGAACACGCAGTGTAGAATAGACAGTCTAACCAAAAATGACAGCT
ACGCTCGTATTTGTCACCCCCCCGGTTGTTGTACCAAAAATATAATGCGA
AAAGAGGATCCAACACATGCAGCTTTCAACACGAAGCAAAAAATACATGT
ACCACTGGAGCCTACGTCTAGACTATGCATACGAGCCATTCGGTGAGCGT
TTGCGACCTTCGGACATTTGCCGTATTTTGCTCGACGCGGCAATATTTAT
CATCACAGTCAGTACGCTACAATACGTCACCCGACAACGAGCACAGAACT
TGAGTGTATGACGTCTGTACAGCAGTCAGCATGAATATAGTGCGAAGATG
CCCCTCATCACCGTAGTATAATACGTACCTCACGACCGCCCCATAACGCC
CGCACACACACATTCATGGCATTTGGAAGAGTTTCGTGTTTTCAACCGCG
CTTAGACTGACGTAAAGTCATTGGTCTGCCGGTTAGCCCGGTCGATGCTA
AAAATAAACGCACGCACACCAAAATATGGTCCCACACACCCTGTACGAAC
GCAAACAAAAATCACAGCAGCAGCAATAAATACGCGGCCCATCGCGCTTG
CTTACAGCAGCAGTAGTTTGCGATCTGTACTTCCACGAAGACTCTCCTCC
TCTTCTTGTGTTCGCACTACATACACCCCGGGCTAAAGCTCGACAGACAA
CATTATTTCTTGACCCATTTCAGGTTCCTAGCACCTCTGGTTCATTTGAC
ACGTCAAACGAAGGATTGTGGTAGTCGGTTCCACCGAATTTTCTCTCTGA
CAACCTGGTCACTTCACGTTTTTTTTTTAACTCTCCCATACAGGAAACCA
GCGACCGGCGCATGGATTAAGACGAAGACCTGCACAATAGCCTGTTCGAC
GCGAGTTGGAAAGGACGGTACCCAACCAGACATTTTGCGTGCCATGCACA
TGCACGTGTTGTTCATTGTGTTGGGGGCAAACGGGTTCGAGGGCGTCATG
GAGGTGTTGGGGGCGTGGCGCCTTTCTGTCGGTCCGTTACCGTGGATACC
TCTGTGCAGCGTGGCAAGACAACGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9911:4134..5458+

>mRNA_Ecto-sp8_S_contig9911.31764.1 ID=mRNA_Ecto-sp8_S_contig9911.31764.1|Name=mRNA_Ecto-sp8_S_contig9911.31764.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9911:4134..5458+ (Ectocarpus species8 EcLAC_412)
ATGGACAAAAAGCCTCACGGTGCTACGGGAGGGGACGACCAGGACGCGCC
CTTCGAAGACCCGGAGGATGCTGTGGGTTTTGGAGCTCGGACGTTGCTGC
AGCGGCTGCCATCGAAGACGTTCTGCACAGCAGCGACCGGCGCATGGATT
AAGACGAAGACCTGCACAATAGCCTGTTCGACGCGAGTTGGAAAGGACGG
TACCCAACCAGACATTTTGCGTGCCATGCACATGCACGTGTTGTTCATTG
TGTTGGGGGCAAACGGGTTCGAGGGCGTCATGGAGGTGTTGGGGGCGTGG
CGCCTTTCTGTCGGTCCGTTACCGTGGATACCTCTGTGCAGCGTGGCAAG
ACAACGG
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