mRNA_Ecto-sp8_S_contig9910.31762.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9910.31762.1
Unique NamemRNA_Ecto-sp8_S_contig9910.31762.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Match: D8LFZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFZ9_ECTSI)

HSP 1 Score: 390 bits (1002), Expect = 4.880e-136
Identity = 192/219 (87.67%), Postives = 202/219 (92.24%), Query Frame = 1
Query:    1 QNLFQYVIRSLSAFEQMVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGFKDGLIDFEHLKEAVDWNLVFKQAANGDADGALERLGYCVEVFERYPGVCRCMLQ*CHLAHAAVAALAAIDDSRARELHNRLREAYNPSRPTASPPAPPVEEWQGLSAFCDDFQCRLFEAIVARKPLGASSTPPDCTSNCEGLQQTHCKDEHLR 657
            ++LFQYV+R LSAFEQ VFEKACEKSATRRHRSSDGPREEDRGG SPHGNA  KAEEVSDAMVTGFKDGLIDFEHLK+++  + + +QA NGDADGALERLGYCVE+FERYPGVCRCMLQ CHL HAAVAALAAIDDSRARELHNRLREAYNPSRPTAS PAPP EEWQGLSAFCDDFQCRLFEAIVARKPLGA STPPDCTSNCEGLQQTHCKDE  R
Sbjct:   32 EDLFQYVVRLLSAFEQTVFEKACEKSATRRHRSSDGPREEDRGGGSPHGNAASKAEEVSDAMVTGFKDGLIDFEHLKQSIGTSYLNEQA-NGDADGALERLGYCVEIFERYPGVCRCMLQWCHLPHAAVAALAAIDDSRARELHNRLREAYNPSRPTASRPAPPSEEWQGLSAFCDDFQCRLFEAIVARKPLGAFSTPPDCTSNCEGLQQTHCKDEDCR 249          
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Match: A0A6H5JPH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH8_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 1.700e-102
Identity = 175/273 (64.10%), Postives = 185/273 (67.77%), Query Frame = 1
Query:    1 QNLFQYVIRSLSAFEQMVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGFKDGLIDFEHLKEAVDWNLVFKQAANGDADGALERLGYCVEVFERYPGVCRCMLQ*CHLAHAAVAALAAIDDSRARELHNRLREAYNPSRPTASPPAPPVEEWQGLSAFCDDFQCR------------------------------------------------------LFEAIVARKPLGASSTPPDCTSNCEGLQQTHCKDEHLR 657
            ++LF+YV+RSL+AFEQ V EKACEKSATRRHRSSDGP EEDRG ASPH NA  KAE+VSDA +TGFKDGLID EHLKEAVD NLVFK+AANGDA GALERLG CVEVFERYP V R MLQ CHLAHAA+AALAAIDDSRAREL+NRLREAYNPS PTAS P PP EEWQGL  FC DFQCR                                                      LFE IVARKP        DCTSNCEGLQQT CKDE LR
Sbjct:   39 EDLFRYVVRSLAAFEQTVLEKACEKSATRRHRSSDGPPEEDRGSASPHCNAARKAEDVSDATMTGFKDGLIDLEHLKEAVDRNLVFKRAANGDAGGALERLGCCVEVFERYPCVYRFMLQWCHLAHAALAALAAIDDSRARELYNRLREAYNPSLPTASLPVPPKEEWQGLVTFCHDFQCRCVGARESQQKAELTGPLGQLSHKCSVGWPVSACGSSIRTRPCWISADSSIILCKLFEGIVARKP--------DCTSNCEGLQQTLCKDEDLR 303          
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Match: D8LU21_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU21_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 2.590e-87
Identity = 144/230 (62.61%), Postives = 171/230 (74.35%), Query Frame = 1
Query:    1 QNLFQYVIRSLSAFEQMVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGFKDGLIDFEHLKEAVD--------------WNLVFKQAANGDADGALERLGYCVEVFERYPGVCRCMLQ*CHLAHAAVAALAAIDDSRARELHNRLREAYNPSRPTASPPAPPVEEWQGLSAFCDDFQCRLFEAIVARKPLGASSTPPDCTSNCEGLQQTHCKDE 648
            +++F++V +SL AF Q+V  +ACEK A R   S DGP EED G ASPH NA P+AEE+SDAMVTGFK GL+DFE+L+EAVD               NLVF +AANGDA G +E+LG+CVEV ERYPGVCRCMLQ CHL HAA+AALA +DDSRAR L+NRLREAYNP RP AS PAPP+EEWQGL+AFCD FQCRL   ++A + L A +TPPDC+ N    QQ H K E
Sbjct:  220 EDVFRFVAQSLEAFVQLVVAEACEKRAIRSCSSDDGPYEEDIGSASPHSNA-PRAEEMSDAMVTGFKVGLLDFENLQEAVDRPNVRTGMGGFLINMNLVFHRAANGDAVGMVEKLGHCVEVLERYPGVCRCMLQWCHLVHAALAALAVMDDSRARGLYNRLREAYNPFRPPASLPAPPLEEWQGLAAFCDHFQCRLVAGVIASERLSAFTTPPDCSRNDASFQQAHLKKE 448          
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Match: D8LU23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU23_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 6.360e-87
Identity = 138/222 (62.16%), Postives = 166/222 (74.77%), Query Frame = 1
Query:    4 NLFQYVIRSLSAFEQMVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGFKDGLIDFEHLKEAVDW--------------NLVFKQAANGDADGALERLGYCVEVFERYPGVCRCMLQ*CHLAHAAVAALAAIDDSRARELHNRLREAYNPSRPTASPPAPPVEEWQGLSAFCDDFQCRLFEAIVARKPLGASSTPPDCTSNCEGLQ 627
            +LF+Y  +S +AFE++VFEKACEKSA RRH S+D P EE R  A+PHGN  P+ EEVSDAMV   K GL+DFEHL+EAVD               NL F++A NGD  GALER G+CVEVFERYPGVCRCM+  C ++H+ + ALAAIDDSRAREL+NRLR+ YNPSRP +  PAPP+EEW+G SAFCDDFQCRLF+ I+A +     S+PPDCTSN  GLQ
Sbjct:  113 DLFRYFSQSQTAFEELVFEKACEKSAARRHLSADEPCEEGRCDANPHGNV-PQVEEVSDAMVIALKAGLLDFEHLQEAVDRPNIRKGIGGLLINVNLAFQKATNGDTGGALERFGHCVEVFERYPGVCRCMILWCRMSHSLLGALAAIDDSRARELYNRLRDVYNPSRPASFLPAPPLEEWRGTSAFCDDFQCRLFDGIIASQAFSVFSSPPDCTSNYAGLQ 333          
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Match: D8LU24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 1.320e-86
Identity = 139/231 (60.17%), Postives = 169/231 (73.16%), Query Frame = 1
Query:    4 NLFQYVIRSLSAFEQMVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGFKDGLIDFEHLKEAVDWN--------------LVFKQAANGDADGALERLGYCVEVFERYPGVCRCMLQ*CHLAHAAVAALAAIDDSRARELHNRLREAYNPSRPTASPPAPPVEEWQGLSAFCDDFQCRLFEAIVARKPLGASSTPPDCTSNCEGLQQTHCKDEHL 654
            +LF+Y  +SL+AFE++VFEKACEKS+ RRH S D P EEDRGG SPHG A P+AE+VSDAMV G +DGLIDFEHL+E VD +              L F++A  GDA GALERLG+CVE FERYPGVCRCM+  CH +H+ + ALAAI  SRAREL+NRLR+ YNPSRP +  PAPP+EEW G S+FCDDFQCR FE I+A +       P DCTSN    QQT+C +++L
Sbjct:  246 DLFRYFSQSLNAFEELVFEKACEKSSIRRHLSDDEPWEEDRGGGSPHG-AAPQAEDVSDAMVMGLQDGLIDFEHLQETVDRSNIRKGIGGLLINMYLAFQKAGKGDAGGALERLGHCVEAFERYPGVCRCMMLWCHASHSILGALAAIKSSRARELYNRLRDVYNPSRPASFLPAPPLEEWHGTSSFCDDFQCRCFEGIIASRARNLFPAPSDCTSNNTDQQQTNCTEDYL 475          
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 3.780e-85
Identity = 140/232 (60.34%), Postives = 171/232 (73.71%), Query Frame = 1
Query:    4 NLFQYVIRSLSAFEQMVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGFKDGLIDFEHLKEAVD--------------WNLVFKQAANGDADGALERLGYCVEVFERYPGVCRCMLQ*CHLAHAAVAALAAIDDSRARELHNRLREAYNPSRPTASPPAPPVEEWQGLSAFCDDFQCRLFEAIVARKPLGASSTPPDCTSNCEGLQQTHCKDEHLR 657
            ++F+YV +S +AFEQ+VFEK CE SAT R  S D P E+D G  SPHGN  P+AEEVSDAMVTG +DGLIDFEHL+EAVD               NL  ++A  GDA GALERL +CVEVFERYPGVCRCM+  CH++H+ + ALAAI+DSRAREL++RLR  YNPSR + S PAPP+EEW+G+SAFCDDFQCR FE I+A + L   STP  C SNC G Q   CK+++L+
Sbjct:  319 DVFRYVTQSHTAFEQLVFEKVCENSATIRPLSDDEPCEDDGGCGSPHGNP-PQAEEVSDAMVTGLRDGLIDFEHLQEAVDRSNIRQGIGGLLINMNLALQKAGKGDAGGALERLRHCVEVFERYPGVCRCMMLWCHVSHSILGALAAINDSRARELYDRLRNVYNPSRSSDSLPAPPLEEWRGMSAFCDDFQCRCFEGIIASQALSVFSTPTLCASNCAGSQGAQCKEDYLQ 549          
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 4.960e-81
Identity = 139/232 (59.91%), Postives = 168/232 (72.41%), Query Frame = 1
Query:    1 QNLFQYVIRSLSAFEQMVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGFKDGLIDFEHLKEAVD--------------WNLVFKQAANGDADGALERLGYCVEVFERYPGVCRCMLQ*CHLAHAAVAALAAIDDSRARELHNRLREAYNPSRPTASPPAPPVEEWQGLSAFCDDFQCRLFEAIVARKPLGASSTPPDCTSNCEGLQQTHCKDEHL 654
            +++F++V +S+ AF Q+V E+AC K ATR   S DGP EEDRG ASPHGNA P+ EE+SDAMVTGFK GL+DFE+L+EAVD               NLVF +AANGDA G LE++G+CVEV ERYPGVCR ML  CHL HAA+AALAA+DD RAR L+NRLREAYN  RP+AS PAPP+E WQGLSAFCD F C LF  ++A + L   +TPP  + N  G QQ H K E +
Sbjct:  317 EDVFRFVAQSVEAFVQLVVEEACGKRATRSCSSDDGPYEEDRGDASPHGNA-PRVEEISDAMVTGFKIGLLDFENLQEAVDLPNVRTGMGGFLINMNLVFHRAANGDAVGMLEKIGHCVEVLERYPGVCRFMLGWCHLVHAALAALAAMDDCRARGLYNRLREAYNQFRPSASLPAPPLEAWQGLSAFCDHFHCMLFGGVIASERLSVFTTPPYSSRNGAGFQQDHLKGEDV 547          
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Match: D8LU28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU28_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 6.800e-81
Identity = 134/232 (57.76%), Postives = 168/232 (72.41%), Query Frame = 1
Query:    4 NLFQYVIRSLSAFEQMVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGFKDGLIDFEHLKEAVD--------------WNLVFKQAANGDADGALERLGYCVEVFERYPGVCRCMLQ*CHLAHAAVAALAAIDDSRARELHNRLREAYNPSRPTASPPAPPVEEWQGLSAFCDDFQCRLFEAIVARKPLGASSTPPDCTSNCEGLQQTHCKDEHLR 657
            ++F+YV +SL AFEQ+VFEK+CE SA RRH S D   +E  GGA+P G+ TP+ EEVSDAMV GFKDGLI+FE+L++ VD                L +++AANGDA GALER G CV+VFERYPGVCRCM   CH+AH  + +LAAIDDSRA  L+NRLR+ YNPSRP++S PAPP+EEW+G+SAFCDDFQCRL E ++A +     S P  CTSNC G  Q  C++  L+
Sbjct:  187 DVFRYVAQSLIAFEQVVFEKSCENSAARRHSSDDKLCDETTGGATPLGH-TPQVEEVSDAMVAGFKDGLIEFEYLQDTVDRPNVGTGIVGLLINMTLAYQKAANGDAGGALERFGQCVDVFERYPGVCRCMFW-CHIAHGILGSLAAIDDSRAGGLYNRLRDVYNPSRPSSSLPAPPLEEWRGISAFCDDFQCRLTEGMIASQAFSVFSAPTHCTSNCTG-SQNECEEASLQ 415          
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Match: D7FTG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTG5_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 4.480e-76
Identity = 125/224 (55.80%), Postives = 161/224 (71.88%), Query Frame = 1
Query:    4 NLFQYVIRSLSAFEQMVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGFKDGLIDFEHLKEAVDW--------------NLVFKQAANGDADGALERLGYCVEVFERYPGVCRCMLQ*CHLAHAAVAALAAIDDSRARELHNRLREAYNPSRPTASPPAPPVEEWQGLSAFCDDFQCRLFEAIVARKPLGASSTPPDCTSNCEGLQQT 633
            +L++YV +S +AFEQ+VFE+AC+ SATRRH   D P E++ GGA PHG+A P+AEEVSD MV   K+GL+DFEHL+E  D                L F++A NGDA GAL+R G+C+EVFERYPG+CR  +  CHLAH  + +LAAIDDSRAR L++RLRE YNPSR ++S PAPP+EEW+G+SAFCD F CR+FE ++AR+ L   ST P C  +  G Q T
Sbjct:  102 DLYRYVAQSHAAFEQVVFERACQNSATRRHPKEDEPCEDNGGGAIPHGSA-PQAEEVSDTMVAALKNGLMDFEHLQETADRPNIRTGVGGLLINITLAFQKAVNGDAAGALKRFGHCIEVFERYPGLCRYRILWCHLAHGILGSLAAIDDSRARGLYSRLREVYNPSRLSSSLPAPPLEEWRGISAFCDHFLCRIFEGVIARQALSVFSTQPLCARSGAGSQGT 324          
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Match: D8LU17_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU17_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 9.830e-71
Identity = 120/195 (61.54%), Postives = 145/195 (74.36%), Query Frame = 1
Query:    4 NLFQYVIRSLSAFEQMVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGFKDGLIDFEHLKEAVD--------------WNLVFKQAANGDADGALERLGYCVEVFERYPGVCRCMLQ*CHLAHAAVAALAAIDDSRARELHNRLREAYNPSRPTASPPAPPVEEWQGLSAFCDDFQCRL 546
            ++++YV +S + F+Q+VFE+AC+ SATRRH   D P E++R GA PHGNA P+AEEVSDAMV G KDGLIDFEHL++ VD                L F++AA GDA G LERLG CVEVFE YPGVCR M   CHLAH+ + ALAAIDDS +R L+ RLRE YNPSRP++S PAPP EEW+G+SAFCDDFQC L
Sbjct:  330 DIYRYVAQSQTRFQQVVFERACQNSATRRHLGEDEPCEDNRAGAFPHGNA-PQAEEVSDAMVVGLKDGLIDFEHLEDTVDRPYIRTGVGGLLINMTLAFQKAAKGDAGGTLERLGRCVEVFELYPGVCRYMTLWCHLAHSVLGALAAIDDSSSRGLYTRLREVYNPSRPSSSLPAPPWEEWRGISAFCDDFQCSL 523          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9910.31762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFZ9_ECTSI4.880e-13687.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPH8_9PHAE1.700e-10264.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU21_ECTSI2.590e-8762.61Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU23_ECTSI6.360e-8762.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU24_ECTSI1.320e-8660.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBJ1_9PHAE3.780e-8560.34Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5K8E7_9PHAE4.960e-8159.91Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU28_ECTSI6.800e-8157.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTG5_ECTSI4.480e-7655.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU17_ECTSI9.830e-7161.54Zn(2)-C6 fungal-type domain-containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9910contigEcto-sp8_S_contig9910:4509..6150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size657
Hectar predicted targeting categoryother localisation
Exons4
Cds size315
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9910.31762.1prot_Ecto-sp8_S_contig9910.31762.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9910 4557..5614 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.9867232-UTR-Ecto-sp8_S_contig9910:4508..45561681145359.9867232-UTR-Ecto-sp8_S_contig9910:4508..4556Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9910 4509..4556 +
1681145360.0421429-UTR-Ecto-sp8_S_contig9910:5614..57931681145360.0421429-UTR-Ecto-sp8_S_contig9910:5614..5793Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9910 5615..5793 +
1681145360.0561786-UTR-Ecto-sp8_S_contig9910:6035..61501681145360.0561786-UTR-Ecto-sp8_S_contig9910:6035..6150Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9910 6036..6150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145360.00034-CDS-Ecto-sp8_S_contig9910:4556..47531681145360.00034-CDS-Ecto-sp8_S_contig9910:4556..4753Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9910 4557..4753 +
1681145360.0153234-CDS-Ecto-sp8_S_contig9910:5277..53941681145360.0153234-CDS-Ecto-sp8_S_contig9910:5277..5394Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9910 5278..5394 +
1681145360.0282292-CDS-Ecto-sp8_S_contig9910:5613..56141681145360.0282292-CDS-Ecto-sp8_S_contig9910:5613..5614Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9910 5614..5614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9910.31762.1

>prot_Ecto-sp8_S_contig9910.31762.1 ID=prot_Ecto-sp8_S_contig9910.31762.1|Name=mRNA_Ecto-sp8_S_contig9910.31762.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp
MVFEKACEKSATRRHRSSDGPREEDRGGASPHGNATPKAEEVSDAMVTGF
KDGLIDFEHLKEAVDWNLVFKQAANGDADGALERLGYCVEVFERYPGVCR
CMLQ*
back to top

mRNA from alignment at Ecto-sp8_S_contig9910:4509..6150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9910.31762.1 ID=mRNA_Ecto-sp8_S_contig9910.31762.1|Name=mRNA_Ecto-sp8_S_contig9910.31762.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1642bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9910:4509..6150+ (Ectocarpus species8 EcLAC_412)
CAGAATTTATTTCAGTATGTTATCAGGTCGCTCTCGGCGTTCGAGCAAAT GGTATTCGAGAAAGCTTGCGAGAAGAGTGCGACTCGCAGGCACCGGAGCA GTGATGGGCCTCGCGAGGAGGACAGAGGCGGTGCTAGCCCGCACGGCAAC GCCACTCCCAAGGCGGAAGAGGTGTCTGATGCAATGGTGACTGGCTTCAA AGATGGCCTGATCGACTTCGAACACCTAAAAGAAGCAGTCGATTGGTGAG CAATTTTTCAACCTGCCTAATATGTAACGGACGATTTCGAGTGTCATGGG ATTTTTCCAAATCTACGATGACGAAGAGGCTCGTGCTCTGCAGCCCCTTT TTTGGTTGACCCCTCTCGTATTGCCGAAACAAGAAGGTCTTTTCTGCAGC TCCTCTGTTGGTCAGCCCCTATTTCCGTAGGCGATCGTATCAGCATGGAG TGTTCCTATGTTCTTACACGCACCCTCATTTCCCTTTCCCCTCGTGGCCG GCCTTCGCCCGTATGGCGAGCAGATCAAACATTCGGACGGGCATGGGTGG CCTCCTCATTAACATGTGAGAAAGCCTGATGTGCTCCGAAACAACACAAT AGTATGCTGTGTTTTCTGCGTGCGAGGCCTCAGACTCGTGGAGTTACGGC CCCTACCACCTCTGCACTGCTACACGAACAGCTCCGGGTAGTGAAGTATC CAATGATGACATCAAGGCGCTGCATATGTTTTGTTCGATCTCGATTACGC TACGTCCTGTATCTACCAGGAACCTGGTGTTTAAACAAGCAGCGAACGGG GACGCTGATGGGGCGCTGGAGAGGTTAGGATATTGCGTCGAGGTATTCGA GCGGTACCCTGGGGTGTGTCGCTGCATGTTACAGTGGTGAGTCGATCGCA TGAACATCACCACAAAGTGGTACTCTGGCTGCGATTGGTGGTCGTGGCGA GTTCTGGAAGAAAAAGCGTCGCCGCGAGCCTGGACGAGGATTAGTACCCC TGAAGAAGTCAGCACTGTTGTTTGGTGGGCTGTACGGTACGACATTGCAT GTTAATTATTCTCATCTTGTTTTTCTTCTCCTCTCGTACCTTCCGCCGTG TACAGATGTCACCTTGCGCACGCTGCCGTGGCAGCCCTAGCAGCGATTGA TGATTCCAGAGCTCGAGAACTGCACAACCGGTTGCGGGAGGCCTACAATC CGTCGCGCCCCACTGCCTCTCCGCCAGCGCCACCTGTGGAGGAGTGGCAG GGGCTGTCTGCATTCTGCGATGACTTCCAGTGCAGGTGCGTGGGGGCGAG GGAAAGCCAACAAAAAGCAAAGCCCAAGGGTCCACTCGGGCAGCTGAGCC ACAAACAAGTGTTCTGTAGGATTACCCGTTTCGGCGGTTTTATTTTTGGC TCAAACCGTGGTGAAAGCTTTTCGCTGGATGGAGCGCTGGGCAAGGAGCT TGGCGTGACAGTGTGGAAGCTATATTTGAACCTCGCCCTTGCTGACTCTC CATTGATTCGTCCATAACTCTTTGCAGGTTGTTTGAGGCTATCGTTGCGA GAAAACCCTTGGGCGCTTCCTCTACCCCACCCGACTGTACCAGCAACTGC GAGGGCTTGCAACAGACTCATTGCAAGGACGAGCATTTACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9910:4509..6150+

>mRNA_Ecto-sp8_S_contig9910.31762.1 ID=mRNA_Ecto-sp8_S_contig9910.31762.1|Name=mRNA_Ecto-sp8_S_contig9910.31762.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9910:4509..6150+ (Ectocarpus species8 EcLAC_412)
ATGGTATTCGAGAAAGCTTGCGAGAAGAGTGCGACTCGCAGGCACCGGAG
CAGTGATGGGCCTCGCGAGGAGGACAGAGGCGGTGCTAGCCCGCACGGCA
ACGCCACTCCCAAGGCGGAAGAGGTGTCTGATGCAATGGTGACTGGCTTC
AAAGATGGCCTGATCGACTTCGAACACCTAAAAGAAGCAGTCGATTGGAA
CCTGGTGTTTAAACAAGCAGCGAACGGGGACGCTGATGGGGCGCTGGAGA
GGTTAGGATATTGCGTCGAGGTATTCGAGCGGTACCCTGGGGTGTGTCGC
TGCATGTTACAGTGA
back to top