mRNA_Ecto-sp8_S_contig9908.31755.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9908.31755.1
Unique NamemRNA_Ecto-sp8_S_contig9908.31755.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9908.31755.1 vs. uniprot
Match: D7G8B8_ECTSI (Fungal zinc cluster transcription factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B8_ECTSI)

HSP 1 Score: 402 bits (1033), Expect = 8.260e-140
Identity = 209/238 (87.82%), Postives = 217/238 (91.18%), Query Frame = 1 
Query:   49 QTKCSAPFGKDSPCRSCRKNGVDCVFSDRQKTGPKAKGAKGVSSSPGANSVTQGGRAGRAVEEPTRAASGSARSSTLRTSGHEAETTRATCALDASEGLASRWTTAYWRLAVDAINSNSDAAQTSVAAVKANNGKRQKELRADMHAIGDRLTASWTKTAVARLKQESVRPTNSASGTIWKAYQLWNMDGEPIQQEPANLGKRFAVVRQVELWWELLVAEANSLRLHAFAISAAAKASH 762
            +TKCSAPFGKDSPCRSCRKNG DCVFSDRQKTGPKAKGAKGVSSSPG +S TQG R GR VEEP RAASG ARSST  TSGHEAETT A CALDASEGLASRWTTAYWR AVDA NSNSDAAQTSVA VKANNG RQKELRADMHAIGDRLT SWTKTAVARLKQESV PTNS SGT+WKAYQL NMDGEPIQQEPA+LGKRFAVVRQVELWWELLVAEA+SLRLHAFAI+A+A+A H
Sbjct:   32 KTKCSAPFGKDSPCRSCRKNGADCVFSDRQKTGPKAKGAKGVSSSPGVSSATQGARVGRTVEEPMRAASGRARSSTTETSGHEAETTTAACALDASEGLASRWTTAYWRFAVDANNSNSDAAQTSVAGVKANNGNRQKELRADMHAIGDRLTVSWTKTAVARLKQESVGPTNSPSGTLWKAYQLRNMDGEPIQQEPASLGKRFAVVRQVELWWELLVAEADSLRLHAFAIAASAEAPH 269
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BLAST of mRNA_Ecto-sp8_S_contig9908.31755.1 vs. uniprot
Match: A0A6H5KYB0_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.030e-64
Identity = 116/167 (69.46%), Postives = 128/167 (76.65%), Query Frame = 1 
Query:    4 ACINDPSVCGVFLPLQTKCSAPFGKDSPCRSCRKNGVDCVFSDRQKTGPKAKGAKGVSSSPGANSVTQGGRAGRAVEEPTRAASGSARSSTLRTSGHEAETTRATCALDASEGLASRWTTAYWRLAVDAINSNSDAAQTSVAAVKANNGKRQKELRADMHAIGDRLT 504
            A +NDPS C VF PLQ +CSAPFGKD PC+SCRKNG+DCVFSDRQK+GPKA GA GV SSPG  SVTQG  A R +EEPTRAASG A + TL TS + AE  R+   LDASE LASRWTTAYW LA D   S  DA QT+VA  +A+NG RQKELRADMH IGDRLT
Sbjct:   25 ASVNDPSACVVFPPLQIRCSAPFGKDIPCQSCRKNGLDCVFSDRQKSGPKATGATGVPSSPGVRSVTQGRGADRTIEEPTRAASGRASTWTLLTSLYTAENARSASTLDASEDLASRWTTAYWALA-DLDASTFDAEQTTVAGARADNGSRQKELRADMHVIGDRLT 190
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BLAST of mRNA_Ecto-sp8_S_contig9908.31755.1 vs. uniprot
Match: D7G8B0_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B0_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.110e-63
Identity = 112/171 (65.50%), Postives = 126/171 (73.68%), Query Frame = 1 
Query:    1 LACINDPSVCGVFLPLQTKCSAPFGKDSPCRSCRKNGVDCVFSDRQKTGPKAKGAKGVSSSPGANSVTQGGRAGRAVEEPTRAASGSARSSTLRTSGHEAETTRATCALDASEGLASRWTTAYWRLAVDAINSNSDAAQTSVAAVKANNGKRQKELRADMHAIGDRLTASW 513
            LA +NDPS C VF PLQ +CSAPFGKD PC+SCRKNG+DCVFSDRQK+GPKA GAKGV SSP   SVT+G R  R +EEPTR  +G A + TL TS ++AE   +   LDASE LASRWTTAYW LA D  +S  DA QTSV   KANN  RQKELR DMH IGD+LT  W
Sbjct:    3 LASVNDPSACVVFPPLQIRCSAPFGKDMPCQSCRKNGLDCVFSDRQKSGPKATGAKGVPSSPRVRSVTRGRRVDRTIEEPTRPGTGRASTWTLLTSLYKAENATSASTLDASEDLASRWTTAYWTLA-DHKDSTFDAEQTSVTGAKANNSSRQKELRTDMHVIGDKLTVRW 172
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BLAST of mRNA_Ecto-sp8_S_contig9908.31755.1 vs. uniprot
Match: A0A6H5JIB6_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB6_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.070e-49
Identity = 109/188 (57.98%), Postives = 118/188 (62.77%), Query Frame = 1 
Query:    1 LACINDPSVCGVFLPLQTKCSAPFGKDSPCRSCRKNGVDCVFSDRQKTGPKAKGAKGVSSSPGANSVTQGGRAGRAVEEPTRAASGSARSSTLRTSGHEAETTRATCALDASEGLASRWTTAYWRLAVDAINSNSDAAQTSVAAVKANNGKRQKELRADMHAIGDRLTASWTKTAVARLKQESVRPTN 564
            LACIN  S C V LPLQ KCSAPFGKD+PCRSCRKNGVDCVFSDRQ  GPKAKGA GV S PG  SVTQGG AGR V+E  RAASG AR ++  T          +C                 RLAVDA  ++SDAAQTSVA   ANN  RQKELR +MHAIGD L A W        K ES R T+
Sbjct:   19 LACINGSSACVVLLPLQKKCSAPFGKDNPCRSCRKNGVDCVFSDRQNPGPKAKGATGVPSLPGEISVTQGGSAGRTVKESARAASGRARPASRLTR---------SCRXXXXXXXXXTNCLPTRRLAVDA--NSSDAAQTSVAGATANNSDRQKELRVEMHAIGDSLNARWVN-----FKGESWRVTD 190
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BLAST of mRNA_Ecto-sp8_S_contig9908.31755.1 vs. uniprot
Match: D7G8B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B7_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.940e-35
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:  418 TSVAAVKANNGKRQKELRADMHAIGDRLTASWTKTAVARLKQESVRPTNSASGTIWKAYQLWNMDGEPIQQEPANLGKR 654
            TSVA VKANNG RQKELRADMHAIGDRLT SWTKTAVARLKQESVRPTNS  GT+WKAYQL NMDG+PIQQ+PA+L  +
Sbjct:   42 TSVAGVKANNGNRQKELRADMHAIGDRLTVSWTKTAVARLKQESVRPTNSPRGTLWKAYQLRNMDGKPIQQKPASLAMK 120
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BLAST of mRNA_Ecto-sp8_S_contig9908.31755.1 vs. uniprot
Match: A0A6H5JUP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.100e-25
Identity = 58/73 (79.45%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:  286 SGHEAETTRATCALDASEGLASRWTTAYWRLAVDAINSNSDAAQTSVAAVKANNGKRQKELRADMHAIGDRLT 504
            SGHEAETT A   LDASEGLASRWTTAYWRLA D   +NSDAAQTSVA   ANNG R+KELRADMH IGDRLT
Sbjct:   30 SGHEAETTGAISVLDASEGLASRWTTAYWRLATD--TNNSDAAQTSVAGATANNGNREKELRADMHVIGDRLT 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9908.31755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G8B8_ECTSI8.260e-14087.82Fungal zinc cluster transcription factor, putative... [more]
A0A6H5KYB0_9PHAE2.030e-6469.46Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7G8B0_ECTSI1.110e-6365.50Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JIB6_9PHAE1.070e-4957.98Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7G8B7_ECTSI1.940e-3583.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUP2_9PHAE3.100e-2579.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9908contigEcto-sp8_S_contig9908:2618..6253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size768
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-19_003800.1
Cds size768
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.4451077-CDS-Ecto-sp8_S_contig9908:2617..27441681145359.4451077-CDS-Ecto-sp8_S_contig9908:2617..2744Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9908 2618..2744 -
1681145359.458665-CDS-Ecto-sp8_S_contig9908:3209..33411681145359.458665-CDS-Ecto-sp8_S_contig9908:3209..3341Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9908 3210..3341 -
1681145359.4711313-CDS-Ecto-sp8_S_contig9908:5209..53471681145359.4711313-CDS-Ecto-sp8_S_contig9908:5209..5347Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9908 5210..5347 -
1681145359.4833848-CDS-Ecto-sp8_S_contig9908:5615..57011681145359.4833848-CDS-Ecto-sp8_S_contig9908:5615..5701Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9908 5616..5701 -
1681145359.4968786-CDS-Ecto-sp8_S_contig9908:5968..62531681145359.4968786-CDS-Ecto-sp8_S_contig9908:5968..6253Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9908 5969..6253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9908.31755.1prot_Ecto-sp8_S_contig9908.31755.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9908 2618..6253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9908.31755.1

>prot_Ecto-sp8_S_contig9908.31755.1 ID=prot_Ecto-sp8_S_contig9908.31755.1|Name=mRNA_Ecto-sp8_S_contig9908.31755.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=256bp
LACINDPSVCGVFLPLQTKCSAPFGKDSPCRSCRKNGVDCVFSDRQKTGP
KAKGAKGVSSSPGANSVTQGGRAGRAVEEPTRAASGSARSSTLRTSGHEA
ETTRATCALDASEGLASRWTTAYWRLAVDAINSNSDAAQTSVAAVKANNG
KRQKELRADMHAIGDRLTASWTKTAVARLKQESVRPTNSASGTIWKAYQL
WNMDGEPIQQEPANLGKRFAVVRQVELWWELLVAEANSLRLHAFAISAAA
KASHQ*
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mRNA from alignment at Ecto-sp8_S_contig9908:2618..6253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9908.31755.1 ID=mRNA_Ecto-sp8_S_contig9908.31755.1|Name=mRNA_Ecto-sp8_S_contig9908.31755.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3636bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9908:2618..6253- (Ectocarpus species8 EcLAC_412)
TTGGCTTGTATCAATGACCCAAGTGTTTGTGGCGTGTTCTTGCCGCTACA
GACAAAATGCTCTGCCCCGTTCGGCAAGGACAGCCCGTGCCGATCGTGCC
GAAAGAATGGCGTCGATTGCGTCTTCTCTGACCGGCAGAAGACGGGGCCC
AAGGCAAAAGGGGCCAAAGGAGTGTCAAGCTCACCGGGAGCAAATTCCGT
CACCCAGGGAGGAAGGGCGGGCAGGGCCGTCGAAGAACCTACGAGGGCTG
CGTCGGGAAGCGCACGGTCATCGACCCTTCGAACGGTACGAGATCTAGCA
TACACATAAAGCTTCCAGGTCCGTTTGTATCCTGTTGCTGTGTCACCGTG
TATTGTAGGATTTGTATTACCACACCCTGCTTTTTAGGCCACAGGCAACA
TGAAGTCGCCCACGAAACCAAATCCGCCAGAAGGTATTCAATAGTCTGTT
CCATTGCGCTGTGTGCCTTGGTTTACCAAGGACCTCCTACAGTAGGTTGG
GGAAAGGTTCTTCACCCACGCCCTCAACCCTGCTCACTTTTTGACCACCC
AGTCTGGTCATGAAGCGGAGACTACTAGAGCGACATGCGCTCTCGATGCG
AGCGAGGGTCTTGCATCCCGGTGGACCACGGCATACTGGTGAGGTATAGG
GGTGTTGCTTGTGATACTGATAAATAGTTTTCGAAGGTGACGAGGCGTAT
TCCTTAGCGTTATCATGTAGAAATCAAGAATATGTTCTCCATGAGTTTTA
CCCGAACTACTGGACAAAATGAAGTGAGGTGAAACGTACTGTCAAATAGA
ATATGAGAGTTGGAATTCGAATGGACCCCCCGCACGACCTGTTCAACGAT
CGTGTCGCCACCCATGCATTGCCCGCCTCTCGAGTGGTCGACTGAATGCC
CACCAGGAGACTCGCGGTCGATGCCATCAACTCCAACTCCGATGCCGCAC
AGACGTCGGTTGCCGCGGTCAAGGCCAACAACGGCAAGCGCCAGAAGGAA
CTGCGGGCGGACATGCACGCCATCGGCGATAGGTTAACCGCCAGGTGGGT
CTTTCACGCACGATCATGCTGCTCTAAAAAACGGGACATGGTCTGCTTCG
AAACATAGCTACGCCGTATTCGCATCATGGAGAAAATGGTGTAGGCAGAG
CAGAGTCGTGGAGGGTCGCGGACGAGTTTCGGCAGAGGAGGAGTAAGTCA
GAATACCGACTTGATAAAATCCAGAATTCAGGCAGCGTGCCTGATACACT
TTCGCAATGGTCAGAGGTGCCCCATGACTAGATGACTCGGAGACATTGGA
ATACACTGCTATGCTAGCTCTAGGGGTACATCTGTACCTTTTGGACAGAA
CTGAAATCGATCAAATGGGTTGACGCATGATGGATGTGGATTGACGCAAC
GATACATTCTCCAATGGTACGCAGCGGCGGATGAGTTCATGGACGGATTG
GATTGAAGGATGAACTGAGAGATTGATGGATTCAATGAAACGATGGACGA
AGCGGATCGGCGGATGAAAATGATCGACTACCCCAAGCAGCGCAGTGTCG
TACCCTATACGTGGCCGAGTGAATTATGTCGGGAGATGAACTTTCTCTTC
GAGGAAAAGGGCTCTCCCGTTGACGCCGGGCGCTCAAAACTCCTACATCG
TTGCACATGATCACGAAGGTACAGAAAATACCAGTTGGCCTCGTTTCATT
GTCTCGCACGCGTTTTCGGTACAGTGTACGCGTTTGCATCGTAGGCCAGG
CACGCCCGCAATCGTTTGGCACACACCAGAAAAGAAACGGCGAATGAGTG
TTCCGTAGTGTAGTTACATAGTCAGCCATGGATAGCCATGAACTACAGTA
CATGTACATCTGGCCATGAGGTTGCACCTCTTTTCCAGATCCAGTGTAGT
GTTGTAGGTAGACGCTCTGGAATTCATGACCGTCTTACCTTCACGACCAC
AGCGAGAGAGTATGGCCCATCAAGAGCCCGTTGCGCATGGGGGTACTGTA
TGTTCAGCCTAAAAACTTATAGGTCCCCAGCATTCGCAGCGGGTGTTCCT
CAAAAGGATTAGGGATACTCTTGCGAGATAAACGTGGTTTACGGAAGCAA
CATCGATGTAGGCCGCAGCTCTGTGCATCATAATCGTTCTCTTTGACCAC
ATGAAATGCCTTGACGACCAAACAATGGCCATACGAACTGTGAACGAAAA
TGCCTTCTAACGATTTCAATGAAATGCGATCTGATGAAATGAAACTGTAC
GATGATGCTGGAATCGTTTGCCCGCATGACATGCTCGTAAATATGGTTGC
ATCAAATGTCCGTCTTTTGCCAAGCTAACATTCGTTCAACAATGTGATGA
AATGCAATCCGAGAAGAAGAATCATTATGATGCAAATGACTGTAGTTGGG
TGGCGGACAATAGCGAGTTGATCCTGGTGGTTCGAACGACCGATTCTTCC
TGCGGTGAGACTACATCACACCTCCGAACGAATATTTTATCTTCAGATGA
ATATGATGTAGCCAACCCGAGGGAATCATAGGCGAATGAAAACCGAAGCA
ACGAATCACCCGTTACTTTCAGCCACCCGCACCGATGACAATCCCAGAAT
TACCCACTGCTTCCGTATTCCACTCATCACGGCAACTGCTAGCCGAGAAA
TAGCCCTCTTCTACTGCGACGGCCTTTAGGTTCCACTTCAGTTCAGGGGG
GCTAGCTCGACCACGGTCAACAGAGTTTGTTTGTACAGTACTCAACAAGA
TTCTCTTTCACAACGCACCTTGAAATGTCTCGGTGGGGGTGCCCACTCAG
CAAGCTGCAATTATTCATGCTGCTTGCTGACCCCCCTTGTTGTATTTTGC
TTGTTGCTGCTGCTGTTCTTGCGCGATTCGATTCTTTCGGTTTTCCTGCG
GCTTGGGTAAAGTTGGACCAAAACAGCTGTGGCTCGCCTCAAGCAGGAGT
CGGTTCGACCGACAAACAGCGCGAGCGGGACAATCTGGAAGGCGTACCAG
CTGTGGAATATGGACGGCGAACCCATTCAGCAAGAGCCCGCGAAGTGAGT
CAACGTACAACTCATTGTGTTGCCTTGTAAACTATGCCTGCGGTTTCCAT
GACAATGAAACTGAAACCATGTACGAGAGAGCGAATTGGAAGGGTTTGGC
TTGGTCATGATCCAGTGATTTGCTGTTTCTCGTTTCACTACAGCATCACG
GGCAATATCATGGTCGGACGAGCCATCATGATGTCATTGCAAATATTGTT
GTGTATTGATATGAACGAGTAAGCCGACACCTGAACCTGCCTGCGTGACA
GACTGGAACACTACATACTTCATAGACTACTACATCATGTACAGGTAGGA
TGTGCAAAGTGTAGATGTTTACATAGTGAAAATGTTGGAGTACATCGAGC
ATTGGTTGCTCCGAAGCACACCGCCGCCGTGCACATCGTTTCACATGTGG
CTAACCCTCCGCCCACCCATCCGCTATGCTTCCACAACTGAAATGGACTT
TTCACACAGCCTGGGAAAGCGATTCGCTGTCGTTCGACAAGTCGAGCTGT
GGTGGGAACTGCTGGTGGCGGAGGCGAATAGTCTTCGCCTTCATGCGTTT
GCCATTTCTGCTGCGGCTAAAGCGTCACATCAATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9908:2618..6253-

>mRNA_Ecto-sp8_S_contig9908.31755.1 ID=mRNA_Ecto-sp8_S_contig9908.31755.1|Name=mRNA_Ecto-sp8_S_contig9908.31755.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9908:2618..6253- (Ectocarpus species8 EcLAC_412)
TTGGCTTGTATCAATGACCCAAGTGTTTGTGGCGTGTTCTTGCCGCTACA
GACAAAATGCTCTGCCCCGTTCGGCAAGGACAGCCCGTGCCGATCGTGCC
GAAAGAATGGCGTCGATTGCGTCTTCTCTGACCGGCAGAAGACGGGGCCC
AAGGCAAAAGGGGCCAAAGGAGTGTCAAGCTCACCGGGAGCAAATTCCGT
CACCCAGGGAGGAAGGGCGGGCAGGGCCGTCGAAGAACCTACGAGGGCTG
CGTCGGGAAGCGCACGGTCATCGACCCTTCGAACGTCTGGTCATGAAGCG
GAGACTACTAGAGCGACATGCGCTCTCGATGCGAGCGAGGGTCTTGCATC
CCGGTGGACCACGGCATACTGGAGACTCGCGGTCGATGCCATCAACTCCA
ACTCCGATGCCGCACAGACGTCGGTTGCCGCGGTCAAGGCCAACAACGGC
AAGCGCCAGAAGGAACTGCGGGCGGACATGCACGCCATCGGCGATAGGTT
AACCGCCAGTTGGACCAAAACAGCTGTGGCTCGCCTCAAGCAGGAGTCGG
TTCGACCGACAAACAGCGCGAGCGGGACAATCTGGAAGGCGTACCAGCTG
TGGAATATGGACGGCGAACCCATTCAGCAAGAGCCCGCGAACCTGGGAAA
GCGATTCGCTGTCGTTCGACAAGTCGAGCTGTGGTGGGAACTGCTGGTGG
CGGAGGCGAATAGTCTTCGCCTTCATGCGTTTGCCATTTCTGCTGCGGCT
AAAGCGTCACATCAATGA
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