mRNA_Ecto-sp8_S_contig9907.31753.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9907.31753.1
Unique NamemRNA_Ecto-sp8_S_contig9907.31753.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9907.31753.1 vs. uniprot
Match: A0A6H5KIA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA0_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 4.530e-79
Identity = 155/193 (80.31%), Postives = 162/193 (83.94%), Query Frame = 1 
Query:    1 NTNKPALAQRQLHADAAASARYRANPSGRGPSSRRPAAGGGSSDGFGDTCREGAEAAAAAAT-GENGGRDDSERRGVLAAGEGGDGAADGXXXXXXXXXXXXARNTPHLASARGGWGWQGVSLADEEEALGSSEPPSRRGSREGSGNLLHGGAVTGVASQHMILPSGEEAGMDAERNVARRASRKRLDVSGIT 576
            NTNKP+LAQRQLHADAAASARYR NPSGRGP+SR PAAGG S DGFGD CREGA  A      GENGGRDDSERRG+LAAGE  +GAADG XX         ARNTPHL SARG WGWQGVSLADEEEA+GSSEPPSRRGSRE SGN LHGGA  GVASQH++LPSGEEAGMDAERNVARRASRKRLDVSGIT
Sbjct:  795 NTNKPSLAQRQLHADAAASARYRPNPSGRGPASRPPAAGG-SGDGFGDACREGAAVAXXXXXXGENGGRDDSERRGMLAAGESREGAADGGXXTGTATAT--ARNTPHLPSARGDWGWQGVSLADEEEAVGSSEPPSRRGSREESGNFLHGGAG-GVASQHLVLPSGEEAGMDAERNVARRASRKRLDVSGIT 983
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BLAST of mRNA_Ecto-sp8_S_contig9907.31753.1 vs. uniprot
Match: D7FNV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNV5_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.850e-43
Identity = 114/210 (54.29%), Postives = 118/210 (56.19%), Query Frame = 1 
Query:    1 NTNKPALAQRQLHADAAASARYRANPSGRGPSSRRPAAGGGSSDG---FGDTCREGAEA-AAAAATGENGGRDDSERRGVL---------AAGEGGDGAADGXXXXXXXXXXXXARNTPHLASARGGWGWQGVSLADEEEALGSSEPPSRRGSREGSGNLLHGGAVTGV-----ASQHMILPSGEEAGMDAERNVARRASRKRLDVSGIT 576
            NTNKPALAQRQLHADAA                               FGDTC EGAEA AAAAATGENGG    ERRGVL         A G+G  G   G            ARNTPHL SARGGWGWQGVSLADEEEA+GSSEP                           ASQH++LPSGEEAGMDAERNVARRASRKRLDVSGIT
Sbjct:   24 NTNKPALAQRQLHADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGDTCPEGAEATAAAAATGENGGXXXXERRGVLXXXXXXXXAAGGDGRGGTGTGT-----------ARNTPHLPSARGGWGWQGVSLADEEEAVGSSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXASQHLVLPSGEEAGMDAERNVARRASRKRLDVSGIT 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9907.31753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIA0_9PHAE4.530e-7980.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNV5_ECTSI1.850e-4354.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9907contigEcto-sp8_S_contig9907:6476..7054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size579
Hectar predicted targeting categoryother localisation
Exons1
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.3540132-CDS-Ecto-sp8_S_contig9907:6475..70541681145359.3540132-CDS-Ecto-sp8_S_contig9907:6475..7054Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9907 6476..7054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9907.31753.1prot_Ecto-sp8_S_contig9907.31753.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9907 6476..7054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9907.31753.1

>prot_Ecto-sp8_S_contig9907.31753.1 ID=prot_Ecto-sp8_S_contig9907.31753.1|Name=mRNA_Ecto-sp8_S_contig9907.31753.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=193bp
NTNKPALAQRQLHADAAASARYRANPSGRGPSSRRPAAGGGSSDGFGDTC
REGAEAAAAAATGENGGRDDSERRGVLAAGEGGDGAADGDGRGGTGTGTG
TARNTPHLASARGGWGWQGVSLADEEEALGSSEPPSRRGSREGSGNLLHG
GAVTGVASQHMILPSGEEAGMDAERNVARRASRKRLDVSGIT*
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mRNA from alignment at Ecto-sp8_S_contig9907:6476..7054-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9907.31753.1 ID=mRNA_Ecto-sp8_S_contig9907.31753.1|Name=mRNA_Ecto-sp8_S_contig9907.31753.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=579bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9907:6476..7054- (Ectocarpus species8 EcLAC_412)
AACACGAACAAGCCTGCCCTCGCACAGAGGCAGCTCCACGCCGACGCCGC
CGCCTCGGCGCGCTACCGCGCGAACCCTTCGGGCCGCGGGCCTTCGTCCC
GCCGCCCCGCGGCCGGCGGCGGCAGCAGCGACGGTTTCGGTGACACTTGT
CGCGAAGGCGCGGAAGCAGCGGCGGCGGCGGCGACAGGGGAGAATGGTGG
AAGGGATGACTCGGAGAGGAGAGGGGTGTTGGCGGCGGGGGAGGGTGGAG
ATGGTGCGGCGGACGGCGACGGCCGTGGCGGCACCGGCACCGGCACCGGC
ACCGCCAGAAACACACCTCACTTGGCGTCGGCTAGGGGGGGTTGGGGTTG
GCAAGGAGTTTCTCTGGCGGACGAGGAGGAGGCGCTAGGTTCGAGCGAGC
CGCCGAGCAGACGGGGGTCGAGAGAAGGCAGCGGGAACTTACTGCACGGC
GGCGCCGTAACCGGCGTTGCCAGCCAGCACATGATCTTGCCGAGTGGAGA
AGAGGCGGGCATGGACGCCGAGAGGAACGTCGCGAGGAGGGCGTCGAGGA
AACGGTTGGACGTGAGCGGGATCACGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9907:6476..7054-

>mRNA_Ecto-sp8_S_contig9907.31753.1 ID=mRNA_Ecto-sp8_S_contig9907.31753.1|Name=mRNA_Ecto-sp8_S_contig9907.31753.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9907:6476..7054- (Ectocarpus species8 EcLAC_412)
AACACGAACAAGCCTGCCCTCGCACAGAGGCAGCTCCACGCCGACGCCGC
CGCCTCGGCGCGCTACCGCGCGAACCCTTCGGGCCGCGGGCCTTCGTCCC
GCCGCCCCGCGGCCGGCGGCGGCAGCAGCGACGGTTTCGGTGACACTTGT
CGCGAAGGCGCGGAAGCAGCGGCGGCGGCGGCGACAGGGGAGAATGGTGG
AAGGGATGACTCGGAGAGGAGAGGGGTGTTGGCGGCGGGGGAGGGTGGAG
ATGGTGCGGCGGACGGCGACGGCCGTGGCGGCACCGGCACCGGCACCGGC
ACCGCCAGAAACACACCTCACTTGGCGTCGGCTAGGGGGGGTTGGGGTTG
GCAAGGAGTTTCTCTGGCGGACGAGGAGGAGGCGCTAGGTTCGAGCGAGC
CGCCGAGCAGACGGGGGTCGAGAGAAGGCAGCGGGAACTTACTGCACGGC
GGCGCCGTAACCGGCGTTGCCAGCCAGCACATGATCTTGCCGAGTGGAGA
AGAGGCGGGCATGGACGCCGAGAGGAACGTCGCGAGGAGGGCGTCGAGGA
AACGGTTGGACGTGAGCGGGATCACGTAG
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