mRNA_Ecto-sp8_S_contig99069.31752.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99069.31752.1
Unique NamemRNA_Ecto-sp8_S_contig99069.31752.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Match: A0A023H494_PENVA (Ubiquitin n=7 Tax=cellular organisms TaxID=131567 RepID=A0A023H494_PENVA)

HSP 1 Score: 288 bits (736), Expect = 4.940e-98
Identity = 144/154 (93.51%), Postives = 149/154 (96.75%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVFNKPE 462
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKH+KVKLAVLKYYKVDDNGKI R RRECP+EECGAGVFMA  FDRQYCG+C LT+VFNKPE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHKKVKLAVLKYYKVDDNGKITRQRRECPSEECGAGVFMANMFDRQYCGRCHLTFVFNKPE 154
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BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Match: A0A7R9X5U5_9CRUS (Hypothetical protein (Fragment) n=2 Tax=Crustacea TaxID=6657 RepID=A0A7R9X5U5_9CRUS)

HSP 1 Score: 287 bits (734), Expect = 1.360e-97
Identity = 143/156 (91.67%), Postives = 152/156 (97.44%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVFNKPEDK 468
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKH+KVKLAVLKYYKVDDNGK++RLRREC ++ CGAGVFMA+ FDRQYCGKCGLTYV++K EDK
Sbjct:    8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHKKVKLAVLKYYKVDDNGKLHRLRRECSSKACGAGVFMASMFDRQYCGKCGLTYVYSKLEDK 163
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BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Match: A0A1L8G5V1_XENLA (Ubiquitin-40S ribosomal protein S27a n=7 Tax=Euteleostomi TaxID=117571 RepID=A0A1L8G5V1_XENLA)

HSP 1 Score: 286 bits (733), Expect = 1.520e-97
Identity = 142/156 (91.03%), Postives = 151/156 (96.79%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVFNKPEDK 468
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKK+YTTPKK KHK +KVKL+VLKYYKVD+NGKI+RLRRECP++ECGAGVFMA+HFDR YCGKC LTY FNKPEDK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLSVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
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BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Match: RS27A_DROME (Ubiquitin-40S ribosomal protein S27a n=26 Tax=cellular organisms TaxID=131567 RepID=RS27A_DROME)

HSP 1 Score: 285 bits (730), Expect = 4.350e-97
Identity = 142/156 (91.03%), Postives = 150/156 (96.15%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVFNKPEDK 468
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNY+TPKKIKHK +KVKLAVLKYYKVD+NGKI+RLRRECP E CGAGVFMAAH DR YCGKC LT+VF+KPE+K
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYSTPKKIKHKRKKVKLAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSKPEEK 156
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BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Match: A0A6J2VYG2_CHACN (Ubiquitin-40S ribosomal protein S27a n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A6J2VYG2_CHACN)

HSP 1 Score: 285 bits (730), Expect = 4.350e-97
Identity = 142/156 (91.03%), Postives = 150/156 (96.15%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVFNKPEDK 468
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKK+YTTPKK KHK +KVKL VLKYYKVD+NGKI+RLRRECPA+ECGAGVFMA+HFDR YCGKC LTY F+KPEDK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLTVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFSKPEDK 156
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BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Match: A0A3P9H5J3_ORYLA (Ubiquitin-40S ribosomal protein S27a n=8 Tax=Clupeocephala TaxID=186625 RepID=A0A3P9H5J3_ORYLA)

HSP 1 Score: 285 bits (728), Expect = 8.770e-97
Identity = 142/156 (91.03%), Postives = 149/156 (95.51%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVFNKPEDK 468
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRK  +YTTPKK KHK +KVKLAVLKYYKVD+NGKI+RLRRECPA+ECGAGVFMA+HFDR YCGKC LTY FNKPEDK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKXXSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCTLTYCFNKPEDK 156
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Match: RS27A_CHICK (Ubiquitin-40S ribosomal protein S27a n=201 Tax=Sauria TaxID=32561 RepID=RS27A_CHICK)

HSP 1 Score: 284 bits (727), Expect = 1.250e-96
Identity = 142/156 (91.03%), Postives = 149/156 (95.51%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVFNKPEDK 468
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRK  +YTTPKK KHK +KVKLAVLKYYKVD+NGKI+RLRRECP+EECGAGVFMA+HFDR YCGKC LTY FNKPEDK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKXXSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Match: RS27A_ICTPU (Ubiquitin-40S ribosomal protein S27a n=100 Tax=cellular organisms TaxID=131567 RepID=RS27A_ICTPU)

HSP 1 Score: 284 bits (727), Expect = 1.250e-96
Identity = 142/156 (91.03%), Postives = 149/156 (95.51%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVFNKPEDK 468
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRK  +YTTPKK KHK +KVKLAVLKYYKVD+NGKI+RLRRECPA+ECGAGVFMA+HFDR YCGKC LTY FNKPEDK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKXXSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
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BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Match: B4KHP5_DROMO (Ubiquitin-like domain-containing protein n=9 Tax=Brachycera TaxID=7203 RepID=B4KHP5_DROMO)

HSP 1 Score: 284 bits (727), Expect = 1.250e-96
Identity = 141/156 (90.38%), Postives = 150/156 (96.15%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVFNKPEDK 468
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNY+TPKKIKHK +KVKLAVLKYYKVD+NGKI+RLRRECP + CGAGVFMAAH DR YCGKC LT+VF+KPE+K
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYSTPKKIKHKRKKVKLAVLKYYKVDENGKIHRLRRECPGDNCGAGVFMAAHEDRHYCGKCNLTFVFSKPEEK 156
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Match: A0A7N5P3S0_AILME (Ubiquitin-40S ribosomal protein S27a n=23 Tax=cellular organisms TaxID=131567 RepID=A0A7N5P3S0_AILME)

HSP 1 Score: 284 bits (727), Expect = 1.250e-96
Identity = 142/156 (91.03%), Postives = 149/156 (95.51%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVFNKPEDK 468
            MQIFVKTLTGKTITLEVEPSD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRK  +YTTPKK KHK +KVKLAVLKYYKVD+NGKI+RLRRECP+EECGAGVFMA+HFDR YCGKC LTY FNKPEDK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKXXSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99069.31752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A023H494_PENVA4.940e-9893.51Ubiquitin n=7 Tax=cellular organisms TaxID=131567 ... [more]
A0A7R9X5U5_9CRUS1.360e-9791.67Hypothetical protein (Fragment) n=2 Tax=Crustacea ... [more]
A0A1L8G5V1_XENLA1.520e-9791.03Ubiquitin-40S ribosomal protein S27a n=7 Tax=Eutel... [more]
RS27A_DROME4.350e-9791.03Ubiquitin-40S ribosomal protein S27a n=26 Tax=cell... [more]
A0A6J2VYG2_CHACN4.350e-9791.03Ubiquitin-40S ribosomal protein S27a n=2 Tax=Clupe... [more]
A0A3P9H5J3_ORYLA8.770e-9791.03Ubiquitin-40S ribosomal protein S27a n=8 Tax=Clupe... [more]
RS27A_CHICK1.250e-9691.03Ubiquitin-40S ribosomal protein S27a n=201 Tax=Sau... [more]
RS27A_ICTPU1.250e-9691.03Ubiquitin-40S ribosomal protein S27a n=100 Tax=cel... [more]
B4KHP5_DROMO1.250e-9690.38Ubiquitin-like domain-containing protein n=9 Tax=B... [more]
A0A7N5P3S0_AILME1.250e-9691.03Ubiquitin-40S ribosomal protein S27a n=23 Tax=cell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99069contigEcto-sp8_S_contig99069:58..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score291.6
Seed ortholog evalue2.2e-76
Seed eggNOG ortholog45351.EDO48503
Preferred nameRpS27A
Model size471
KEGG koko:K02977,ko:K14842
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006464,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016567,GO:0019538,GO:0022626,GO:0022627,GO:0031386,GO:0032446,GO:0032991,GO:0034641,GO:0034645,GO:0036211,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070647,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.ubiquitin
EggNOG OGs38CAM@33154,3BDTF@33208,COG5272@1,KOG0004@2759
Cds size471
COG Functional cat.O
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03009,ko03011,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.3132713-CDS-Ecto-sp8_S_contig99069:57..5281681145359.3132713-CDS-Ecto-sp8_S_contig99069:57..528Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99069 58..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99069.31752.1prot_Ecto-sp8_S_contig99069.31752.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99069 58..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99069.31752.1

>prot_Ecto-sp8_S_contig99069.31752.1 ID=prot_Ecto-sp8_S_contig99069.31752.1|Name=mRNA_Ecto-sp8_S_contig99069.31752.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=157bp
MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKHRKVKL
AVLKYYKVDDNGKINRLRRECPAEECGAGVFMAAHFDRQYCGKCGLTYVF
NKPEDK*
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mRNA from alignment at Ecto-sp8_S_contig99069:58..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99069.31752.1 ID=mRNA_Ecto-sp8_S_contig99069.31752.1|Name=mRNA_Ecto-sp8_S_contig99069.31752.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=471bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99069:58..528+ (Ectocarpus species8 EcLAC_412)
ATGCAAATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGT
TGAGCCATCAGACTCCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGG
AGGGAATCCCTCCAGATCAGCAGAGGTTGATCTTCGCCGGCAAGCAGTTG
GAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCT
GCACTTGGTCCTCAGGCTGAGGGGAGGCGCCAAGAAAAGGAAGAAGAAGA
ATTACACAACTCCCAAGAAGATCAAGCACAAGCACCGTAAGGTCAAGTTG
GCTGTCCTCAAGTACTACAAGGTGGACGACAACGGCAAGATCAACCGCCT
GAGGCGTGAGTGCCCCGCCGAGGAGTGCGGCGCCGGAGTCTTCATGGCCG
CGCACTTTGACCGCCAGTACTGCGGCAAGTGCGGCCTGACCTACGTGTTT
AACAAGCCCGAGGATAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99069:58..528+

>mRNA_Ecto-sp8_S_contig99069.31752.1 ID=mRNA_Ecto-sp8_S_contig99069.31752.1|Name=mRNA_Ecto-sp8_S_contig99069.31752.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99069:58..528+ (Ectocarpus species8 EcLAC_412)
ATGCAAATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGT
TGAGCCATCAGACTCCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGG
AGGGAATCCCTCCAGATCAGCAGAGGTTGATCTTCGCCGGCAAGCAGTTG
GAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCT
GCACTTGGTCCTCAGGCTGAGGGGAGGCGCCAAGAAAAGGAAGAAGAAGA
ATTACACAACTCCCAAGAAGATCAAGCACAAGCACCGTAAGGTCAAGTTG
GCTGTCCTCAAGTACTACAAGGTGGACGACAACGGCAAGATCAACCGCCT
GAGGCGTGAGTGCCCCGCCGAGGAGTGCGGCGCCGGAGTCTTCATGGCCG
CGCACTTTGACCGCCAGTACTGCGGCAAGTGCGGCCTGACCTACGTGTTT
AACAAGCCCGAGGATAAGTAG
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