mRNA_Ecto-sp8_S_contig9906.31751.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9906.31751.1
Unique NamemRNA_Ecto-sp8_S_contig9906.31751.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Match: D7FRJ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRJ7_ECTSI)

HSP 1 Score: 774 bits (1999), Expect = 3.220e-277
Identity = 374/394 (94.92%), Postives = 382/394 (96.95%), Query Frame = 2
Query:    2 RRLCACFMIAFALLVTLALLRPPGASPS--LRLVEGVDWQNAPRIDLVCRTYGAAIQIFWQTFIPTYLMFWPISSWKSSGLVVILDGDSPSDHRMGTLLQNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFYGDLYTDADYVGIIDTDAAFISPVVPSDLFDEGKPILRGMNIITQWQSETTRKAAGGFPYVSRFMTRIAFPIIIKSEHFSQMRRVITENLGAETFEEAFKAICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRDTGDFHGLNLQGRARASDDGSVVAANVPAIFVMKHLDDKDVFTLNDDMYENMCLGSNNEAGNCQRRPPAENDGHAQTLKWSVGSTTWGDTYKDHSRRVSRAGSAFQWRGEEDEDWVHVGGQ 1177
            RR CACF+ AFALLV+LALLRPPGASPS  LRLVEGVDWQNAPRIDLVCRTYGAAIQIFWQTFIPTYLMFWPISSWKSSGLVVILDGDS  DHR+GTLLQNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFY DLYTDADY+GIIDTDAAFISPVVPSDLFDEGKPILRGMNIITQWQSET+RKA GGFPYV RFMTRIAFPIIIKSEHFSQMR+VI ENLGAETFEEAFK ICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRD GDFHGLNLQGRARASDDGSVVAANVPAIFVMKHLDDKDVFTLNDDMYEN+CLGSNNEAGNCQRRPPA+NDGHAQTLKWSVGSTTWGDTYKDHSRRVSRAGSAFQWRGEEDEDWVHVGGQ
Sbjct:   14 RRWCACFIFAFALLVSLALLRPPGASPSPSLRLVEGVDWQNAPRIDLVCRTYGAAIQIFWQTFIPTYLMFWPISSWKSSGLVVILDGDSAFDHRIGTLLQNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFYADLYTDADYMGIIDTDAAFISPVVPSDLFDEGKPILRGMNIITQWQSETSRKATGGFPYVGRFMTRIAFPIIIKSEHFSQMRQVIAENLGAETFEEAFKVICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRDNGDFHGLNLQGRARASDDGSVVAANVPAIFVMKHLDDKDVFTLNDDMYENVCLGSNNEAGNCQRRPPAQNDGHAQTLKWSVGSTTWGDTYKDHSRRVSRAGSAFQWRGEEDEDWVHVGGQ 407          
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Match: A0A6H5K9S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S0_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 1.030e-78
Identity = 132/232 (56.90%), Postives = 163/232 (70.26%), Query Frame = 2
Query:  479 VVPSDLFDEG-KPILRGMNIITQWQSETTRKAAGGFPYVSRFMTRIAFPIIIKSEHFSQMRRVITENLGAETFEEAFKAICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRDTGDFHGLNLQGRARASDDGSVVAANVPAIFVMKHLDDKDVFTLNDDMYENMCLGSNNEAGNCQRRPPAENDGHAQTLKWSVGSTTWGDTYKDHSRRVSRAGSAFQWRGEEDEDWVHVG 1171
            VVPSDLFD+  KP ++G+N  + W+SE T++A GG   V RFMT + FP+I+KS+HF  MRR IT NLGA TF EAF  ICS G  SYSQFEIM+ YLWY  HDEYSWHIAD    D   LN+ G  R  +D  VVA NVP I VMKH   K   +++ D Y+ +CLGSNN AGNCQ R P+  DG AQT++WSVG+ TW  TY++HS ++SRAG AF+WR E  +DW+H G
Sbjct:   19 VVPSDLFDDDRKPFIKGVNCGSPWRSEVTKRAIGGVESVGRFMTPMIFPVIVKSDHFDDMRRDITRNLGAATFAEAFHMICSEGANSYSQFEIMVTYLWYNKHDEYSWHIADPANMDAKSLNI-GDKRYYEDDRVVATNVPVIVVMKH--SKIRTSIDSDTYDYLCLGSNNLAGNCQSRVPSPLDGSAQTVQWSVGNQTWMHTYEEHSTKLSRAGKAFRWRRETAQDWIHPG 247          
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Match: A0A3M7T151_BRAPC (Uncharacterized protein n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T151_BRAPC)

HSP 1 Score: 231 bits (588), Expect = 1.530e-64
Identity = 122/302 (40.40%), Postives = 184/302 (60.93%), Query Frame = 2
Query:  116 NAPRIDLVCRTYGAAIQIFWQTFIPTYLMFWPISSWKSSGLVVILDGDSPSDHRMGTLLQNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFYGDLYTDADYVGIIDTDAAFISPVVPSDLFDEGKPILRGMN-IITQWQSETTRKAAGGFPYVSRFMTRIAFPIIIKSEHFSQMRRVITENLGAETFEEAFKAICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRDTGDFHGLNLQGRARASDDGSVVAANVPAIFVMKHLDD-----KDVFTLNDDMYENMCLGSNNEAGNC 1003
             +P + ++CR Y  ++  F+  F  ++L+FWP  +WK+S +V++LD ++  DHRMG++L ++    KV   +E      T C+NWR+ GY+R QYSNFY DLYTD +Y+ I+D+D+ F++ V P DLF +GKP + G N   T+W +    K A G   +  FM R  FPIIIK  HF Q+R  IT+ +   TFEEAF +ICS  K  YSQF+++++YLWY+  +EYSWH+  +D  +F    +  RA  +D   +   N P I V KH          +F +   M++ MC+ S+N+AG+C
Sbjct:   84 GSPDVTVLCRAYSGSVMEFYNMFYLSFLIFWPHKTWKNSDMVIVLDSENELDHRMGSVLAHLYPYPKVF--FEKMPQKATFCSNWRNIGYSRTQYSNFYSDLYTDKEYIAIVDSDSYFVAQVTPEDLFVDGKPRIIGYNGCCTRWLNSI--KEALGVDPLGEFMNRGNFPIIIKRNHFKQIRMHITKTMATRTFEEAFHSICSKYKGQYSQFDLLVHYLWYFKRNEYSWHL--KDVLEFGHYRMPKRA-TNDTDVIQMNNKPMISVAKHAGSLLNYPNYMFKI---MFDYMCVASDNQAGSC 375          
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Match: A0A3P3YPH4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YPH4_PLABS)

HSP 1 Score: 208 bits (529), Expect = 8.280e-57
Identity = 123/298 (41.28%), Postives = 169/298 (56.71%), Query Frame = 2
Query:  122 PRIDLVCRTYGAAIQIFWQTFIPTYLMFWPISSWKSSGLVVILDGDSPSDHRMGTLLQNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFYGDLYTDADYVGIIDTDAAFISPVVPSDLFDEGKPILRGMN-IITQWQSETTRKAAGGFPYVSRFMTRIAFPIIIKSEHFSQMRRVITENLGAETFEEAFKAICSAGKESYSQFEIMINYLWYYHHDEYSWHI-ADRDTGDFHGLNLQGRARASDDGSVVAA--NVPAIFVMKHLDDKDVFTLNDDMYENMCLGSNNEAGNC 1003
            PR  +VCR Y      +WQ F+  + +FWP  +W +S +VV+LD +S  D R+ ++L    LP    V +E    PG LC ++RSEGY RQ YSNF+ D  T+AD+VG +D+D  FI+PV   DLF  GKP +   N   T W S   R A GG P V+ FMT  +FP I+   HF+ MR  I   LGA TF++AF  IC+   E YSQ+++M +YLWY H D+Y+WH  A R    F       +A  SDD  V+AA    PA+ +MK +   D  +L     + +C+ +N  A  C
Sbjct:   52 PRFSIVCRMYSGTAPEWWQAFVVGHQLFWP-RAWTNSDVVVVLDAESAHDWRVASVLSR--LPPFPAVVFEAKPGPGVLCASFRSEGYCRQMYSNFFADRQTEADFVGFVDSDTMFITPVAVGDLFVGGKPRVSAYNGCCTGWNSPIER-AIGGKP-VAEFMTSSSFPFIVHRGHFAPMRAHIARTLGAATFDDAFHTICAEYGEQYSQYDLMGHYLWYAHRDDYAWHFRAPRGHDAF-------QAAQSDDADVLAAMQTRPAVSLMKMIGHSDFGSLLTVWSDYVCVAANWTAPGC 337          
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Match: A0A6H5JZ07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ07_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.670e-50
Identity = 83/145 (57.24%), Postives = 103/145 (71.03%), Query Frame = 2
Query:   98 EGVDWQNAPRIDLVCRTYGAAIQIFWQTFIPTYL------------------MFWPISSWKSSGLVVILDGDSPSDHRMGTLLQNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFYGDLYTDADYVGIIDTDAAFISP 478
            EG+DW+NAPR+DLV RT+   ++ FW  F+P++L                  +FWPISSW SSG+VVILDG++  DH  GT+LQ++N P   QVKYE PAP GTLC +WR EGYARQQYSNFYG+LYTDA+YV IIDTD   I+P
Sbjct:   33 EGIDWKNAPRVDLVTRTFAGGVKAFWDIFLPSFLVSRGGNAWQVDSNVVPSQLFWPISSWTSSGVVVILDGENALDHEAGTILQHMNFPFVFQVKYEAPAPNGTLCGDWRKEGYARQQYSNFYGNLYTDAEYVAIIDTDTKIIAP 177          
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Match: A0A0G4J7L3_PLABS (Uncharacterized protein (Fragment) n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J7L3_PLABS)

HSP 1 Score: 183 bits (465), Expect = 1.610e-49
Identity = 111/266 (41.73%), Postives = 151/266 (56.77%), Query Frame = 2
Query:  149 YGAAIQIFWQTFIPTYLMFWPISSWKSSGLVVILDGDSPSDHRMGTLLQNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFYGDLYTDADYVGIIDTDAAFISPVVPSDLFDEGKPILRGMN-IITQWQSETTRKAAGGFPYVSRFMTRIAFPIIIKSEHFSQMRRVITENLGAETFEEAFKAICSAGKESYSQFEIMINYLWYYHHDEYSWHI-ADRDTGDFHGLNLQGRARASDDGSVVAA--NVPAIFVMKHLDDKD 934
            Y      +WQ F+  + +FWP  +W +S +VV+LD +S  D R+ ++L    LP    V +E    PG LC ++RSEGY RQ YSNF+ D  T+AD+VG +D+D  FI+PV   DLF  GKP +   N   T W S   R A GG P V+ FMT  +FP I+   HF+ MR  I   LGA TF++AF  IC+   E   Q+++M +YLWY H D+Y+WH  A R    F       +A  SDD  V+AA    PA+ +MK +   D
Sbjct:    2 YSGTAPEWWQAFVVGHQLFWP-RAWTNSDVVVVLDAESAHDWRVASVLSR--LPPFPAVVFEAKPGPGVLCASFRSEGYCRQMYSNFFADRQTEADFVGFVDSDTMFITPVAVGDLFVGGKPRVSAYNGCCTGWNSPIER-AIGGKP-VAEFMTSSSFPFIVHRGHFAPMRAHIARTLGAATFDDAFHTICAEYGEH--QYDLMGHYLWYAHRDDYAWHFRAPRGHDAF-------QAAQSDDADVLAAMQTRPAVSLMKMIGHSD 253          
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Match: A0A1S3H6D8_LINUN (uncharacterized protein LOC106152497 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H6D8_LINUN)

HSP 1 Score: 127 bits (319), Expect = 7.730e-28
Identity = 83/244 (34.02%), Postives = 129/244 (52.87%), Query Frame = 2
Query:  110 WQNAPRIDLVCRTYGAAIQIFWQTFIPTYLMFWPISSWKSSGLVVILDGDSPSDHRMGTLLQNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFYGDLYTDADYVGIIDTDAAFISPVVPSDLFDEGKPILRGM--NIITQWQSETTRKAAG--GFPYVSRFMTRIAFPIIIKSEHFSQMRRVITENLGAETFEEAFKAICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRDTGDF 829
            W N P  ++  R   A   I+ +  IP+  +FWP      + LVV+LD ++ SDH  G  L+N     KV   YE P+        + + G+ RQQ+S FY + YT+A+YVG +DTD  F+S V P DLF  GKP++ G+  +++  W      K +   G P V + M    FP+I+K EH  ++R  + E    + F++ FK       + +SQF IM  Y++ +H  EY++ I  R  G++
Sbjct:   48 WTNVPSFEVFVRMCSAKKDIYDKILIPSMKLFWP----NDTRLVVVLDNETKSDHLCGEELRNRYPYPKVF--YENPSKA------YNNHGHDRQQWSMFYPENYTNAEYVGFVDTDTLFVSTVTPEDLFLNGKPVVIGVYGSLLNSWWRGVALKTSKLFGKPEVMKCMGY--FPVIVKVEHIVKLRHYL-EKRHNKPFDDIFKEYTVV--DIFSQFNIMCQYVYTFHRSEYNFRIQKRPNGNW 274          
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Match: A0A7S1J303_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J303_9EUGL)

HSP 1 Score: 110 bits (275), Expect = 1.690e-23
Identity = 90/277 (32.49%), Postives = 130/277 (46.93%), Query Frame = 2
Query:  347 PGTLCNNWRSEGYARQQYSNFYGDLYTDADYVGIIDTDAAFISPVVPSDLFDE-GKPILRGMN-------IITQWQSETTRKAAGGFPYVSRFMTRIAFPIIIKSEHFSQMRRVITENLGAETFEEAFKAICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRDTGDFHGLNLQGRARASDDGSVVAANVPAIFVMKH---LDDKDVFTLNDDMYENMCLGSNNEAGNC-----QRRPPAENDG-HAQTLKWSVGSTTWGDTYKDHSRRVSRAGSA 1126
            PG +C   R+ GY RQ YS F+ D +TDA+ + I+D D+ F +   P  LF E G+P++ G         +  +W   T  + A G P V+ FM    FPI+IK   F  +RR I++ L   TF+EAF+ I     +SY Q  I++NY W++H DEY WH++          ++ G      +G+    NVPA  V +H   L    +       Y + C+ S    GNC     Q   P  N   H   L W      W     D +R + + GSA
Sbjct:    2 PGGICG--RNTGYDRQMYSGFFADCFTDAEVIAIVDNDSLFTTVPTPGSLFSEDGRPVVIGKQSLYNIGKLAGRWAHAT--EVALGLPQVADFMFN--FPILIKRNVFGAVRRHISQQLNT-TFDEAFRIIAK-DPDSYCQINIILNYAWHFHRDEYKWHLS----------SMPGSKGPMINGTY---NVPAPRVAQHARGLYRSQIQNYVRTGYCHACVAS----GNCINATAQALMPTLNQWRHVVLLNWDHTGHVW-----DEARWMGKTGSA 248          
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Match: A0A482QXN1_9EURY (Uncharacterized protein n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482QXN1_9EURY)

HSP 1 Score: 110 bits (274), Expect = 5.980e-22
Identity = 77/229 (33.62%), Postives = 116/229 (50.66%), Query Frame = 2
Query:  203 FWPISSWKS-------------SGLVVILDGDSPSDHRMGTLL----QNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFYGDLYTDADYVGIIDTDAAFISPVVPSDLFDE-GKPILR---GMNIITQWQSETTRKA-AGGFPYVSRFMTRIAFPIIIKSEHFSQMRRVITENLGAETFEEAFKAICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRDTG 823
            FWP +S  S                +V+LD +SP+DH +G  L    Q  N P+  Q++YE P         +   G+ RQQ+S F+ D +    +V  +D+D  F + +   DLFD+ G+P +    G    + W       A A G P V R M+   FP+I+K++H + +R  I+  LG + F+  F+        +YSQF IM NY WY+H DEYSWH+ +R+ G
Sbjct:   66 FWPQASRPSVQHDKCALPPLQMQSFMVVLDDESPADHNLGAQLNHSLQAWNFPA--QIRYERPE------QYYGDRGHNRQQWSMFWADRHVSGKFVAFVDSDTIFTTQIHAGDLFDDVGRPRIIANVGAPQNSFWHDAPAATALALGKPEVLRCMSY--FPVILKTQHLAALREHISSTLGGD-FDTVFQRHIVT--RTYSQFNIMCNYAWYFHKDEYSWHMQEREPG 281          
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Match: UPI00077A8C31 (uncharacterized protein LOC107343138 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A8C31)

HSP 1 Score: 104 bits (259), Expect = 4.790e-20
Identity = 73/214 (34.11%), Postives = 116/214 (54.21%), Query Frame = 2
Query:  197 LMFWPISSWKSSGLVVILDGDSPSDHRMGTLLQNI---NLPS-KVQVKYET-PAPPGTL--CNNWRSEGYARQQYSNFYGDLYTDADYVGIIDTDAAFISPVVPSDLFDEGKPILRGMNII--TQW--QSETTRKAAGGFPYVSRFMTRIAFPIIIKSEHFSQMRRVITENLGAETFEEAFKAICSAGKESYSQFEIMINYLWYYHHDEYSWHI 805
            ++FWP S  K+   V++LD +S  DH+ G ++ N    + P  K++V YE  P   G L   ++ +  GY RQ +S+F+ DLYT+   +  +D+DAAFI+PV  S +F+  K  + G       +W  Q   T   A G P+V  +M+   FP  I  + F+  R  IT ++ A  FE+AFK+    G +  S   I+++Y W++  D Y WH+
Sbjct:   84 VLFWPPSYGKT---VIVLDEESAPDHQFGEIVINHTRQHFPEYKLEVLYEALPKDKGVLEFPHSRQRPGYNRQLWSSFFLDLYTNDSIIAWMDSDAAFITPVTKSSIFNGTKLRVLGWGCTFHIEWVKQYAITTMRALGLPFVVDYMSY--FPAYIYRDTFTHCREHITRHMNASDFEKAFKSFYLGG-DLLSPVSIVLSYAWFFERDRYDWHM 291          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9906.31751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FRJ7_ECTSI3.220e-27794.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K9S0_9PHAE1.030e-7856.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3M7T151_BRAPC1.530e-6440.40Uncharacterized protein n=1 Tax=Brachionus plicati... [more]
A0A3P3YPH4_PLABS8.280e-5741.28Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A6H5JZ07_9PHAE3.670e-5057.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4J7L3_PLABS1.610e-4941.73Uncharacterized protein (Fragment) n=1 Tax=Plasmod... [more]
A0A1S3H6D8_LINUN7.730e-2834.02uncharacterized protein LOC106152497 n=1 Tax=Lingu... [more]
A0A7S1J303_9EUGL1.690e-2332.49Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A482QXN1_9EURY5.980e-2233.62Uncharacterized protein n=1 Tax=Methanosarcinales ... [more]
UPI00077A8C314.790e-2034.11uncharacterized protein LOC107343138 n=1 Tax=Acrop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9906contigEcto-sp8_S_contig9906:1531..5233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score100.5
Seed ortholog evalue1.8e-18
Seed eggNOG ortholog45351.EDO35365
Model size2108
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG OGs2EQQW@1,2STPK@2759
Cds size1158
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9906.31751.1prot_Ecto-sp8_S_contig9906.31751.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9906 1553..4305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.2048202-UTR-Ecto-sp8_S_contig9906:1530..15521681145359.2048202-UTR-Ecto-sp8_S_contig9906:1530..1552Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9906 1531..1552 +
1681145359.275742-UTR-Ecto-sp8_S_contig9906:4305..52331681145359.275742-UTR-Ecto-sp8_S_contig9906:4305..5233Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9906 4306..5233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.2193224-CDS-Ecto-sp8_S_contig9906:1552..17291681145359.2193224-CDS-Ecto-sp8_S_contig9906:1552..1729Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9906 1553..1729 +
1681145359.2325156-CDS-Ecto-sp8_S_contig9906:2460..27401681145359.2325156-CDS-Ecto-sp8_S_contig9906:2460..2740Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9906 2461..2740 +
1681145359.2459495-CDS-Ecto-sp8_S_contig9906:3182..35521681145359.2459495-CDS-Ecto-sp8_S_contig9906:3182..3552Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9906 3183..3552 +
1681145359.2631767-CDS-Ecto-sp8_S_contig9906:3974..43051681145359.2631767-CDS-Ecto-sp8_S_contig9906:3974..4305Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9906 3975..4305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9906.31751.1

>prot_Ecto-sp8_S_contig9906.31751.1 ID=prot_Ecto-sp8_S_contig9906.31751.1|Name=mRNA_Ecto-sp8_S_contig9906.31751.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=386bp
MIAFALLVTLALLRPPGASPSLRLVEGVDWQNAPRIDLVCRTYGAAIQIF
WQTFIPTYLMFWPISSWKSSGLVVILDGDSPSDHRMGTLLQNINLPSKVQ
VKYETPAPPGTLCNNWRSEGYARQQYSNFYGDLYTDADYVGIIDTDAAFI
SPVVPSDLFDEGKPILRGMNIITQWQSETTRKAAGGFPYVSRFMTRIAFP
IIIKSEHFSQMRRVITENLGAETFEEAFKAICSAGKESYSQFEIMINYLW
YYHHDEYSWHIADRDTGDFHGLNLQGRARASDDGSVVAANVPAIFVMKHL
DDKDVFTLNDDMYENMCLGSNNEAGNCQRRPPAENDGHAQTLKWSVGSTT
WGDTYKDHSRRVSRAGSAFQWRGEEDEDWVHVGGQ*
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mRNA from alignment at Ecto-sp8_S_contig9906:1531..5233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9906.31751.1 ID=mRNA_Ecto-sp8_S_contig9906.31751.1|Name=mRNA_Ecto-sp8_S_contig9906.31751.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3703bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9906:1531..5233+ (Ectocarpus species8 EcLAC_412)
CAGGCGATTGTGCGCTTGTTTCATGATTGCGTTTGCTCTCCTCGTCACCC TCGCGCTCTTGCGGCCACCCGGAGCAAGCCCTAGCCTAAGGCTGGTTGAG GGCGTTGATTGGCAGAACGCCCCGCGGATTGACCTGGTGTGTCGAACGTA TGGCGCGGCCATTCAAATATTTTGGCAGACTTTCATCCCGACCTACCTGG TGAGCTCAATGTTTAGGGAGAAGGGTCATCCAGAGTAGGGGAGGCTGTTC AACGTTCGTATATTAGCAGAGAAGAGCTCTGAGCTCGTATGTGAGGCTAT GGCTAAGGGTGAAGGGGGGCAGCCTCTTGTGTACACACTTGTCCGAGGAG TTCACCCACAACATGAACATCATTGCGATGCAACAAAAATACGTCGGGCC AGAACAGAAAGTACAATGCACGTCATGAACGTTTCCTCCGAAAGACTCTG GTCCATCCATCGGCAAATAACATGTCAAAAGTATCCGTCCTCACGTTCAG ATCAATTGAACAAAGGAAACAGGCAGGAGAACCACCAATCAATCCGGGCC AAAAGACTTGGCTTCGTCTCACTGTATGCCCCAGCCCGTGCCTTGTTTTG ATTGTGCATCCCCTTCCAGATTCGGTCGGGCTGTGCGTGTCTCGTTTAAG AACTTGAGAGAAGCAAGTAACCGCCGTCTCGTCCACGAGCGCTTCAACTG CGGTGGTCCGTCCTGTGAGAGATGAACGTGTCAACGCACCGATTCATCTT TCGTTGCGTTTTGCCCTGCATGCTGCCCTCCGACAAACCGCATGCTGTAT GCACAGTGTAATTGGAAGACACCAGGGAGTTTCATCACAGCCGGCGAGGA CATACGACGACGTTGTTTTATTGATCTAGGCCCTCTCCAACCGCCCCAAC TGTTTTGTCCCACGCTGGTGGCGACCTCAGATGTTTTGGCCGATCTCGTC ATGGAAGTCCAGCGGCCTCGTTGTCATTCTGGACGGTGATAGCCCTTCCG ACCATAGGATGGGGACGCTCCTTCAGAATATAAACTTGCCGTCCAAGGTG CAAGTGAAATACGAGACTCCTGCCCCCCCCGGCACGCTCTGCAACAACTG GAGGAGCGAAGGTTACGCCAGGCAGCAGTACTCAAACTTCTATGGTGACT TGTACACGGATGCGGATTACGTGGGAATCATCGATACCGACGCCGCTTTC ATTTCGCCAGGTGACTTGAAAATGATCTTGGCATGAGTGGTTGTAACCTC AAGCTGTATTTCATGACATCTCTCTCTCTCTCTCTCCGTTATTATAAGCA ATATTTGATCAATTCTCATACGAGCGCAAGATTTGAAAATGCCGACATGT TCCAGGTTTGGTACACATTTTCAAGGTCGCTAGCGGGTTAGAAATGCCGT ATGGAAACAAACGCTGACACTTGCTGTCGAGCCGTTGGCGAGACGTAAAT TGATGAGCACGAACATCACCATCTTTTGCGTTTGACCGCCGCTAATTCTG GTGCAGAATATGTTGAACCCCTTACTGACAACTGAACACACACAAAAACG CTGCTCACACGCAAAATCTTGCCGTGCGTCGATCTCATCCCTGCCCAACT CGCGCCCGACCGCTGTTACACCATTCGCTTTATCGGCGCTGCCATCAAAA AGTGGTTCCGTCTGATCTCTTCGACGAGGGAAAGCCAATCCTACGGGGCA TGAACATTATCACTCAATGGCAAAGTGAGACCACCAGGAAAGCCGCAGGG GGCTTCCCGTACGTGAGCAGGTTCATGACGAGAATCGCGTTCCCCATCAT CATTAAGTCTGAGCACTTCTCCCAGATGAGGCGGGTCATCACGGAGAACC TTGGTGCCGAGACGTTTGAAGAGGCGTTCAAAGCGATCTGTTCGGCGGGA AAGGAGAGCTATTCCCAGTTCGAAATTATGATCAACTACCTTTGGTATTA CCATCACGATGAGTACTCGTGGCACATTGCGGACCGCGACACCGGCGACT TCCACGGACTCAACCTGCAAGGGTGGGTGGATGTTTTGCCTCGCCCTTGG TTTTCACTAGAAGTTCGGGGTGACTGCCACTGTACATACCTGTTTTCTTT TCCCTCTGAATTCCACTATATTTGACTTCCGTTGGCAGAAAATCCCTATC ATTAAAACCTTGCGGTTTTTTTACGCTGTACGCCTGTAATATGCACTATT AGTCGCACAATCCGCTTGAATTGATGGAATTGGGTAGTACTATTAGTCGC ACAATCCGCTTGAATTGATGGAATTGGGTAGTCCCAGGCAGCAGTAGTAC GTACCATTTCCGAAGCCCAGTGATCTGATGAACGCATGTTTTTCCGATCA CTTGAATGCGCTCTTGCACGTATGTATCACATGAAATGAGACACAAACGC CGACGTTTTCCATCACGGCTGTTGCACCCTTGCTGTCGCTCTAGCCGTGC GAGGGCCTCCGATGATGGCAGTGTCGTGGCCGCGAACGTTCCGGCTATCT TTGTCATGAAGCACCTGGACGATAAGGATGTCTTCACCTTGAACGACGAC ATGTACGAGAACATGTGCCTCGGCAGCAACAACGAGGCGGGGAACTGCCA AAGGCGGCCGCCGGCCGAGAATGACGGCCACGCACAAACCCTCAAGTGGT CTGTCGGGAGCACCACGTGGGGCGACACGTACAAGGATCACTCCCGTCGA GTCTCGCGGGCAGGGTCGGCATTCCAGTGGCGAGGGGAAGAAGATGAAGA TTGGGTTCATGTGGGCGGCCAGTGATCACCGCTGCCGTGCCAATTGAGGA CTGACTGTTTACTGTAAGTGTGAGTGTGGGATCGGCTGCGATGATGCAGA CGTTTGAAGCGCGGTCGTGGGTGAGGAGCTTGTGTGGTACCTTCGGAACG TGCAGAGCAACCTAGGGATACTTTGGATCCTGGGATCGGCAAGGGGCAAT GCCCGAACTGAAGTGTGTTTTCCGTACGAAAGCAGTACAGCAGTAGTAGG AATCCACCTCTACGAGTCTGTGGACTGAACTAAAGCCTGGGTAGATCCGG GATGTATATTTAGTGTTCCCTACGGCCCTGTGTTTCCAATGATTGTGCAT TTGGCCGTACATCAGCGATTGTTTGTCTTCTATTCGTGTCGCGGCGTCAG ACCGTAACACGATCGTAAACGTGTTTATTGTAGTTCGAACGCGGTCGATT GAGGTATTTTTTGGCAGCCTTTAGCCTTTAGCGATTCTTCCGCAGTATTT GTCATGATGGCGGTTTTCAGGGTGGTTCTTGGATGTACGTAGTCTACCGT TTTATATTTTCCAAAGTCTAGGTGGTGTTGGTCTAAATTGACAAATATTA CTTCTCAGCCTCGGAACCCAAGAACCGGCAGAAATACGGACATGGAAATA TCTGTATATACGCGAGAGGAAGGTGGGATCTCTCACGTTTGGTTACGTTT GATTGAGTAGTTGGACACGGGCCCACAACTAGCTCCACACGGAAACCAAC CCCGTTTATTGGGTGTACCGTAGGCATATTGTAGCTTGCGTCAATTGTTT GTAGCAAAAACATTCATGAGGTGGGTGGTGACCAGTAGAAGAAGAAGCAG GTACGTACGTCATGCACTTTATTTTAGTTCGGACCCATCGCGTGGCGTCA ACGGAATAAAACGATCGCGTTTGAATGTGCATGAACAACATGCAACGACA GGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9906:1531..5233+

>mRNA_Ecto-sp8_S_contig9906.31751.1 ID=mRNA_Ecto-sp8_S_contig9906.31751.1|Name=mRNA_Ecto-sp8_S_contig9906.31751.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9906:1531..5233+ (Ectocarpus species8 EcLAC_412)
ATGATTGCGTTTGCTCTCCTCGTCACCCTCGCGCTCTTGCGGCCACCCGG
AGCAAGCCCTAGCCTAAGGCTGGTTGAGGGCGTTGATTGGCAGAACGCCC
CGCGGATTGACCTGGTGTGTCGAACGTATGGCGCGGCCATTCAAATATTT
TGGCAGACTTTCATCCCGACCTACCTGATGTTTTGGCCGATCTCGTCATG
GAAGTCCAGCGGCCTCGTTGTCATTCTGGACGGTGATAGCCCTTCCGACC
ATAGGATGGGGACGCTCCTTCAGAATATAAACTTGCCGTCCAAGGTGCAA
GTGAAATACGAGACTCCTGCCCCCCCCGGCACGCTCTGCAACAACTGGAG
GAGCGAAGGTTACGCCAGGCAGCAGTACTCAAACTTCTATGGTGACTTGT
ACACGGATGCGGATTACGTGGGAATCATCGATACCGACGCCGCTTTCATT
TCGCCAGTGGTTCCGTCTGATCTCTTCGACGAGGGAAAGCCAATCCTACG
GGGCATGAACATTATCACTCAATGGCAAAGTGAGACCACCAGGAAAGCCG
CAGGGGGCTTCCCGTACGTGAGCAGGTTCATGACGAGAATCGCGTTCCCC
ATCATCATTAAGTCTGAGCACTTCTCCCAGATGAGGCGGGTCATCACGGA
GAACCTTGGTGCCGAGACGTTTGAAGAGGCGTTCAAAGCGATCTGTTCGG
CGGGAAAGGAGAGCTATTCCCAGTTCGAAATTATGATCAACTACCTTTGG
TATTACCATCACGATGAGTACTCGTGGCACATTGCGGACCGCGACACCGG
CGACTTCCACGGACTCAACCTGCAAGGCCGTGCGAGGGCCTCCGATGATG
GCAGTGTCGTGGCCGCGAACGTTCCGGCTATCTTTGTCATGAAGCACCTG
GACGATAAGGATGTCTTCACCTTGAACGACGACATGTACGAGAACATGTG
CCTCGGCAGCAACAACGAGGCGGGGAACTGCCAAAGGCGGCCGCCGGCCG
AGAATGACGGCCACGCACAAACCCTCAAGTGGTCTGTCGGGAGCACCACG
TGGGGCGACACGTACAAGGATCACTCCCGTCGAGTCTCGCGGGCAGGGTC
GGCATTCCAGTGGCGAGGGGAAGAAGATGAAGATTGGGTTCATGTGGGCG
GCCAGTGA
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