mRNA_Ecto-sp8_S_contig99016.31742.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99016.31742.1
Unique NamemRNA_Ecto-sp8_S_contig99016.31742.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Match: D8LJK0_ECTSI (Acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK0_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 5.290e-38
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1
Query:   19 VAVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVGGEGADNWLCRLSRK 228
            VAVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVGGEGADN LCRLSRK
Sbjct:  244 VAVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVGGEGADNCLCRLSRK 313          
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Match: A0A6H5JJY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY1_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 6.650e-36
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1
Query:   49 MFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVGGEGADNWLCRLSRK 228
            MFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVGGEGADNWLCRLSRK
Sbjct:    1 MFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVGGEGADNWLCRLSRK 60          
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Match: A0A7S3GVM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVM1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.670e-15
Identity = 33/71 (46.48%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   19 VAVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVGGEGADNWLCRLSRKV 231
            +A++ GGIAEM++++  TE ++L+KR+N  K +I+ GADIVPV+FFGN+ +   VG   +D+ + +LSRK+
Sbjct:  187 LAIIPGGIAEMYLMNPDTEGIFLRKRQNTVKAAIQEGADIVPVFFFGNTRIFSTVGKNSSDSLMSKLSRKL 257          
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Match: W7T9Y9_9STRA (Acyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9Y9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.310e-12
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   22 AVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVGGEG--ADNWLCRLSRKV 231
            AV VGG+AEMF+V    E+LYLKK K F + +I+ GAD+VPV+ +GNS L  +VG     +   L RLSR++
Sbjct:  217 AVTVGGVAEMFLVGGDKERLYLKKHKGFIREAIKNGADVVPVFCYGNSKLFSVVGESSRLSMGLLKRLSRRI 288          
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Match: A0A290G0P1_9STRA (Acyltransferase n=2 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A290G0P1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.220e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   22 AVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVGGEGADNW--LCRLSRKV 231
            AV VGG+AEMF+V    E+LYLKK K F + +++ GAD+VPV+ FGNS L  +VG     +   + RLSR++
Sbjct:  220 AVTVGGVAEMFLVGGDKERLYLKKHKGFVREAMKNGADLVPVFCFGNSKLFNVVGESSRVSMGLMKRLSRRI 291          
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Match: A0A411PNG2_9CHLO (Acyltransferase n=1 Tax=Chromochloris zofingiensis TaxID=31302 RepID=A0A411PNG2_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 4.420e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   19 VAVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVGGEGADNWLCRLSRKV 231
            V V+VGGIAEMF+     E++ L++RK F +IS+E GADI+PVY FGNS        +    WL R+SRK+
Sbjct:  291 VGVMVGGIAEMFLQRPDREQIKLRERKGFVRISLEHGADILPVYIFGNSAAL-----DFGPPWLQRMSRKL 356          
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Match: A0A383W0X4_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W0X4_TETOB)

HSP 1 Score: 63.9 bits (154), Expect = 7.170e-11
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 RRTLR--QVAVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHG 177
            RR L+   V +V GGIAEMFM     E++ L+ RK F +I++EAGAD+VP Y FGNS L G
Sbjct:   38 RRLLKLGSVGLVPGGIAEMFMSEESHEEIKLRDRKGFVRIAVEAGADLVPCYHFGNSRLFG 98          
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Match: A0A250XI88_9CHLO (Acyltransferase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XI88_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 9.110e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   19 VAVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGAD-IVPVYFFGNSLLHGLVGGEGADNWLCRLSRKV 231
            +AVVVGGIAEM+M+    E++ LK RK F KI++E  AD IVPVY+FGNS        E    WL  +SRK+
Sbjct:  177 LAVVVGGIAEMYMLDPRKERIKLKGRKGFAKIAVEEKADGIVPVYYFGNSRCL-----EFGPQWLSDMSRKL 243          
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Match: A0A6V1SPI9_HETAK (Acyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SPI9_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 1.410e-10
Identity = 32/68 (47.06%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   25 VVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNSLLHGLVG-GEGADNWLCRLSR 225
            V+ GGIAE+++VS   E++YL++R+ F +++++ GAD+VP++ FGNS +  LV  G GAD    RLSR
Sbjct:  214 VLPGGIAEIYLVSRAEERVYLRRRRGFVRVAVQNGADLVPMFLFGNSRILDLVPLGGGADADANRLSR 281          
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Match: A0A7S3DWV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DWV7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.890e-10
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   19 VAVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVYFFGNS 165
            V + VGG+AE+F+   + E+LYLK RK F K+S++ G DIVP+Y FGN+
Sbjct:  193 VVLYVGGLAELFLSDENEERLYLKNRKGFIKLSLQTGVDIVPIYMFGNT 241          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99016.31742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJK0_ECTSI5.290e-3898.57Acyltransferase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JJY1_9PHAE6.650e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GVM1_9STRA7.670e-1546.48Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7T9Y9_9STRA4.310e-1250.00Acyltransferase n=3 Tax=Monodopsidaceae TaxID=4250... [more]
A0A290G0P1_9STRA8.220e-1248.61Acyltransferase n=2 Tax=Nannochloropsis oceanica T... [more]
A0A411PNG2_9CHLO4.420e-1149.30Acyltransferase n=1 Tax=Chromochloris zofingiensis... [more]
A0A383W0X4_TETOB7.170e-1154.10Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A250XI88_9CHLO9.110e-1151.39Acyltransferase n=1 Tax=Chlamydomonas eustigma Tax... [more]
A0A6V1SPI9_HETAK1.410e-1047.06Acyltransferase n=1 Tax=Heterosigma akashiwo TaxID... [more]
A0A7S3DWV7_9STRA3.890e-1053.06Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99016contigEcto-sp8_S_contig99016:47..494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score140.2
Seed ortholog evalue4.1e-31
Seed eggNOG ortholog2880.D8LJK0
Model size231
KEGG rclassRC00004,RC00037
KEGG koko:K14457
KEGG ReactionR03755,R03756
KEGG Pathwayko00561,ko04975,map00561,map04975
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.2-acylglycerol O-acyltransferase activity
EggNOG OGsKOG0831@1,KOG0831@2759
EC2.3.1.22
Cds size231
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145358.547601-CDS-Ecto-sp8_S_contig99016:46..1541681145358.547601-CDS-Ecto-sp8_S_contig99016:46..154Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99016 47..154 -
1681145358.562711-CDS-Ecto-sp8_S_contig99016:371..4941681145358.562711-CDS-Ecto-sp8_S_contig99016:371..494Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99016 372..494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99016.31742.1prot_Ecto-sp8_S_contig99016.31742.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99016 47..494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99016.31742.1

>prot_Ecto-sp8_S_contig99016.31742.1 ID=prot_Ecto-sp8_S_contig99016.31742.1|Name=mRNA_Ecto-sp8_S_contig99016.31742.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=77bp
RRTLRQVAVVVGGIAEMFMVSNHTEKLYLKKRKNFTKISIEAGADIVPVY
FFGNSLLHGLVGGEGADNWLCRLSRKV
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mRNA from alignment at Ecto-sp8_S_contig99016:47..494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99016.31742.1 ID=mRNA_Ecto-sp8_S_contig99016.31742.1|Name=mRNA_Ecto-sp8_S_contig99016.31742.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=448bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99016:47..494- (Ectocarpus species8 EcLAC_412)
CGACGAACTTTGCGACAGGTCGCGGTGGTCGTCGGAGGAATCGCAGAGAT GTTCATGGTCTCCAACCACACAGAAAAGCTGTACCTGAAGAAGCGCAAGA ACTTCACAAAGATCTCCATCGAGGTACCGTTAGCACATATCTGCATCTTT GCAAGCTTGAAGAGCCCGGCTGTTGTCCCTGCGTGTGTTTGCGATTGCGG TCAGGGCCGCAGTTGTTGTGATTCAGGTGATGAACCATCATTATTGGGGG GATGATTAAGACCATCTACTATCGAAATTGGCCGGATGACCAAATCTGCG AGGTTGGTGTCTCGTTAACATCACGTGTTGTTCCGAGCAGGCCGGGGCAG ACATCGTCCCCGTGTACTTCTTCGGCAACTCTCTCTTGCATGGCCTTGTT GGTGGGGAGGGCGCGGACAACTGGCTTTGCAGGCTGTCTCGGAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99016:47..494-

>mRNA_Ecto-sp8_S_contig99016.31742.1 ID=mRNA_Ecto-sp8_S_contig99016.31742.1|Name=mRNA_Ecto-sp8_S_contig99016.31742.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99016:47..494- (Ectocarpus species8 EcLAC_412)
CGACGAACTTTGCGACAGGTCGCGGTGGTCGTCGGAGGAATCGCAGAGAT
GTTCATGGTCTCCAACCACACAGAAAAGCTGTACCTGAAGAAGCGCAAGA
ACTTCACAAAGATCTCCATCGAGGCCGGGGCAGACATCGTCCCCGTGTAC
TTCTTCGGCAACTCTCTCTTGCATGGCCTTGTTGGTGGGGAGGGCGCGGA
CAACTGGCTTTGCAGGCTGTCTCGGAAGGTA
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