mRNA_Ecto-sp8_S_contig9899.31737.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9899.31737.1
Unique NamemRNA_Ecto-sp8_S_contig9899.31737.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Match: D8LJE0_ECTSI (Putative Del transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE0_ECTSI)

HSP 1 Score: 708 bits (1827), Expect = 3.010e-241
Identity = 510/567 (89.95%), Postives = 515/567 (90.83%), Query Frame = 2 
Query:  293 MDLSPREEAELSTVSFPETPTPVTGIAAPGRAHSCHSRLANAGVVSAGKAWGG---DESTKANSSARNKCPLSPPRPRLKTACKPSPARSAAAVILATLLGGQQQPSPDDGTALPCLQAAVEDMANPTSSDNTNEGTTGAVLGAQPQQQWTGQQQQPGAEVATPVVVGREGAGGNAGGVEGLPRAAGQPQRLQWGAREDASVGSPQRESPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAARXXGEGRSPRKRSYADGDRRCGDSSGEGRARSQLFGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSMAGPAAXXXXXXXRGDAVVTPSVPESGXXXXGLLFCREELGAAGSGLGDDLGYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAAGGPVXXXXXXXXXXXXXXXXXXXXGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNGMTECLKQAKLIGNAVGSLGGPRADGTKVK 1984
            MDLSPR EA LSTVSFPETPTP TG+AAPGR HSCHSRLANAGV SAGKA GG   DESTKANSSARNKCPLSPPRPRLKTACKPSPARSAAAVILATLLGGQQQPSPDDGTALPCLQAAVEDMANPTSS N+NEGT GA LGAQPQQQWTG QQQPGAE ATP VVGREGAGGNAGGVEGLPRAAGQPQRLQWGAREDASVGSPQRESPP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XX    SPRKRSYADGDRRCGDSSGEGRARSQLF A  XXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXX  +AVVTPSVPESGXXXXGLLFCRE+LGAAGSGLGDDLGYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVA GGPVXXXXXXXXXXXXXX      GGK+GDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEV KNGMTECLKQAKLIGNAVGSLGGPRADGTK K
Sbjct:    1 MDLSPRGEAALSTVSFPETPTPPTGMAAPGRTHSCHSRLANAGVGSAGKACGGGGGDESTKANSSARNKCPLSPPRPRLKTACKPSPARSAAAVILATLLGGQQQPSPDDGTALPCLQAAVEDMANPTSSGNSNEGTNGAALGAQPQQQWTGGQQQPGAEGATPAVVGREGAGGNAGGVEGLPRAAGQPQRLQWGAREDASVGSPQRESPPPSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SPRKRSYADGDRRCGDSSGEGRARSQLFCAGGXXXXXXXXXXRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVVTPSVPESGXXXXGLLFCREDLGAAGSGLGDDLGYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAGGGPVXXXXXXXXXXXXXXA-----GGKKGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVAKNGMTECLKQAKLIGNAVGSLGGPRADGTKEK 558
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BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Match: A0A6H5L5C3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C3_9PHAE)

HSP 1 Score: 623 bits (1606), Expect = 4.720e-207
Identity = 491/574 (85.54%), Postives = 500/574 (87.11%), Query Frame = 2 
Query:  323 LSTVSFPETPTPVTGIAAPGRAHSCHSRLANAGVVSAGKAWGGD-ESTKANSSARNKCPLSPPRPRLKTACKPSPARSAAAVILATLLGGQQQPSPDDGTALPCLQAAVEDMANPTSSDNTNEGTTGAVLGAQPQQQWTGQQQQPGAEVATPVVVGREGAGGNAGGVEGLPRAAGQPQRLQWGAREDASVGSPQRESPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RSAARXXGEG---------------RSPRKRSYADGDRRCGDSSGEGRARSQLFGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSMAGPAAXXXXXXXRGDAVVTPSVPESGXXXXG---LLFCREELGAAGSGLGDDLGYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAAGGPVXXXXXXXXXXXXXXXXXXXXGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNGMTECLKQAKLIGNAVGSLGGPRADGTKVK 1984
             + VSFPETPTP TG+AAPGR HSCHSRLANAGV SAGKA GGD ESTKANSSAR+KC LSPPRPRLKTACKPSPARSAAAVILATLLGGQQQPS DDGTALPCLQ AVEDMA PTSSDN+NEGT GA LGAQP QQWT   QQPGA  ATPVVVG+EGAGGNA GVEGLPRAAGQPQRLQ  ARED SVGSPQRESP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R AARXX EG               RSPRKRS+AD DRRCGDSSGEGRARSQLFGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXX   AVVTPS+PESGXXXX    LLFCRE+LGAAGSGLGDDLGYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVA G   XXXXXXXXXXXXXXXX        GDKGD EEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEV KNGMTECLKQAKLIGNA+GSLGGPRADGTK K
Sbjct:    8 FAQVSFPETPTPATGMAAPGRVHSCHSRLANAGVESAGKACGGDDESTKANSSARSKCSLSPPRPRLKTACKPSPARSAAAVILATLLGGQQQPSSDDGTALPCLQVAVEDMAKPTSSDNSNEGTNGAALGAQPLQQWT-DPQQPGAG-ATPVVVGQEGAGGNADGVEGLPRAAGQPQRLQRRAREDTSVGSPQRESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAARXXXEGSPSPAAAGVRRSPRQRSPRKRSHADDDRRCGDSSGEGRARSQLFGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVAVVTPSLPESGXXXXXXXXLLFCREDLGAAGSGLGDDLGYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAGGXXXXXXXXXXXXXXXXXXX--------GDKGDDEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVAKNGMTECLKQAKLIGNAIGSLGGPRADGTKEK 571
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BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Match: A0A7S1B9K5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B9K5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.660e-15
Identity = 58/153 (37.91%), Postives = 77/153 (50.33%), Query Frame = 2 
Query: 1481 SYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAAGGPVXXXXXXXXXXXXXXXXXXXXGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNGMTECLKQAKLIGNA 1939
            +Y RKDKSLGLLC  F+  YG                                     K+ D  DG    I +D AA  LGV RRRIYD+INILES+ +V R  KNTY W+GK++L   L +LQ+ A  ++PE+   NG+   L +  +I N+
Sbjct:   20 TYSRKDKSLGLLCENFMSRYGEM-----------------------------------KKVDDSDG----ISIDAAANALGVERRRIYDIINILESIEIVRRKCKNTYIWYGKEHLGYVLARLQQQAFTMWPEDAKTNGL---LSEGSIILNS 130
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BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Match: A0A7S0SS51_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SS51_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 4.330e-15
Identity = 57/169 (33.73%), Postives = 78/169 (46.15%), Query Frame = 2 
Query: 1466 DLGYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAAGGPVXXXXXXXXXXXXXXXXXXXXGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNGMTECLKQAKLIGNAVGSLGGPRADG 1972
            DL  ++Y RKDKSLGLLC  F+ +YG                                            G+E +I LD+AA++LGV RRRIYD++N+LESV VV R  KN Y WHG   +   L +L +     F +++  +G  E  K   ++   V   GG   DG
Sbjct:   75 DLSSTAYNRKDKSLGLLCENFLHLYGA-------------------------------------------GQEELISLDEAASKLGVERRRIYDIVNVLESVEVVVRKAKNKYTWHGIARMPGALERLWKEGIKEFGQDLVLDGNDEGAKDGGVV--KVHKRGGAGEDG 198
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Match: A0A7S3Q8J9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q8J9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.470e-15
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 2 
Query: 1481 SYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAAGGPVXXXXXXXXXXXXXXXXXXXXGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNGMTEC-LKQAKLIGNAVGSLGGPRADGT 1975
            +Y RKDKSLG+LC  F+  Y   QH +   A   P                                   + +D+A+  L V RRRIYD+INILE++ VVTR  KNTY W G  N+  TLR++Q  A  +FP++V  NG+ E  L++A+     V +  G    GT
Sbjct:   74 AYRRKDKSLGVLCANFMRRYNKIQHEKPTDAPHPP----------------------------------EVTIDEASQSLMVERRRIYDIINILEAIEVVTRKGKNTYNWFGMDNINDTLRKMQTEAFTLFPQDVVFNGLHEVKLEEAEAAVAKVAAQAGNGGVGT 205
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BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Match: A0A4D9DD61_9STRA (E2F_TDP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD61_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.240e-14
Identity = 56/143 (39.16%), Postives = 70/143 (48.95%), Query Frame = 2 
Query: 1472 GYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAAGGPVXXXXXXXXXXXXXXXXXXXXGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNGM 1900
            G ++Y RK+KSLGLLC  F+  +G                                    G+EG +   E G I LD AA  L V RRRIYD+INILES+  V R  KNTY W+G K L  TL+QLQ      +PE+   NG+
Sbjct:  322 GGTAYSRKEKSLGLLCENFIRTFGRE----------------------------------GEEGTEAGAENG-ISLDMAAVTLKVERRRIYDIINILESIVFVERKCKNTYYWYGVKYLRDTLKQLQEAGLKQWPEDARLNGV 429
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BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Match: C1MSA2_MICPC (Uncharacterized protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MSA2_MICPC)

HSP 1 Score: 88.2 bits (217), Expect = 2.250e-14
Identity = 53/147 (36.05%), Postives = 71/147 (48.30%), Query Frame = 2 
Query: 1457 LGDDLGYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAAGGPVXXXXXXXXXXXXXXXXXXXXGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNG 1897
            LG ++G ++Y RKDKSLGLLC  F+ +YG                                            G+E +I LD+AA +LGV RRRIYD++N+LESV VV R  KN Y WHG   +   L +L R     F E++  +G
Sbjct:  145 LGSEIGSAAYNRKDKSLGLLCENFLHLYGA-------------------------------------------GQEELISLDEAATKLGVERRRIYDIVNVLESVEVVVRKAKNKYTWHGIARMPNALDRLYREGVKEFGEDLALDG 248
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BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Match: A0A7S0I7D6_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I7D6_MICPS)

HSP 1 Score: 87.0 bits (214), Expect = 2.310e-14
Identity = 52/148 (35.14%), Postives = 72/148 (48.65%), Query Frame = 2 
Query: 1454 GLGDDLGYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAAGGPVXXXXXXXXXXXXXXXXXXXXGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNG 1897
            G+G ++  ++Y RKDKSLGLLC  F+ +YG                                            G+E +I LD+AAA+LGV RRRIYD++N+LESV VV R  KN Y WHG   +   L +L +     F E++  +G
Sbjct:  118 GVGGEMAGATYNRKDKSLGLLCENFLHLYGA-------------------------------------------GQEELISLDEAAAKLGVERRRIYDIVNVLESVEVVVRKAKNKYTWHGISRMPAALDRLWKEGKREFGEDLVLDG 222
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Match: C1FGP3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FGP3_MICCC)

HSP 1 Score: 87.0 bits (214), Expect = 5.220e-14
Identity = 52/148 (35.14%), Postives = 72/148 (48.65%), Query Frame = 2 
Query: 1454 GLGDDLGYSSYCRKDKSLGLLCGRFVEVYGHSQHFRDRVAAGGPVXXXXXXXXXXXXXXXXXXXXGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNG 1897
            G+G ++  ++Y RKDKSLGLLC  F+ +YG                                            G+E +I LD+AAA+LGV RRRIYD++N+LESV VV R  KN Y WHG   +   L +L +     F E++  +G
Sbjct:  118 GVGGEMAGATYNRKDKSLGLLCENFLHLYGA-------------------------------------------GQEELISLDEAAAKLGVERRRIYDIVNVLESVEVVVRKAKNKYTWHGISRMPAALDRLWKEGKREFGEDLVLDG 222
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Match: A0A7S0CIQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIQ8_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.800e-13
Identity = 50/136 (36.76%), Postives = 66/136 (48.53%), Query Frame = 2 
Query: 1499 KSLGLLCGRFVEVYGHSQHFRDRVAAGGPVXXXXXXXXXXXXXXXXXXXXGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNGMTE 1906
            KSLGLLC  F+  YG       ++A   P                             DG    I +D AAA LGV RRRIYD+INILES+ VV R  KNTY W G  +L     +LQ+ A  ++P++  +NG+ +
Sbjct:    1 KSLGLLCANFINQYG-------KIAPPTPPYTECVNPPN-------------------DG----ISIDAAAASLGVERRRIYDIINILESIHVVRRKCKNTYTWRGTDHLPQVFAKLQKEAMKIWPDDARQNGIVD 106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9899.31737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJE0_ECTSI3.010e-24189.95Putative Del transcription factor (Partial) (Fragm... [more]
A0A6H5L5C3_9PHAE4.720e-20785.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1B9K5_9STRA2.660e-1537.91Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0SS51_9CHLO4.330e-1533.73Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S3Q8J9_9STRA7.470e-1535.54Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A4D9DD61_9STRA2.240e-1439.16E2F_TDP domain-containing protein n=1 Tax=Nannochl... [more]
C1MSA2_MICPC2.250e-1436.05Uncharacterized protein n=1 Tax=Micromonas pusilla... [more]
A0A7S0I7D6_MICPS2.310e-1435.14Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
C1FGP3_MICCC5.220e-1435.14Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S0CIQ8_9STRA3.800e-1336.76Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9899contigEcto-sp8_S_contig9899:92..5607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score712.6
Seed ortholog evalue1.5e-202
Seed eggNOG ortholog2880.D8LJE0
Model size1987
KEGG koko:K09391
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.chorionic trophoblast cell differentiation
EggNOG OGsKOG2577@1,KOG2578@2759
Cds size1695
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9899.31737.1prot_Ecto-sp8_S_contig9899.31737.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9899 92..5315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.9731553-CDS-Ecto-sp8_S_contig9899:91..1831681145357.9731553-CDS-Ecto-sp8_S_contig9899:91..183Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9899 92..183 -
1681145357.993161-CDS-Ecto-sp8_S_contig9899:492..5811681145357.993161-CDS-Ecto-sp8_S_contig9899:492..581Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9899 493..581 -
1681145358.0053544-CDS-Ecto-sp8_S_contig9899:1419..17241681145358.0053544-CDS-Ecto-sp8_S_contig9899:1419..1724Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9899 1420..1724 -
1681145358.0190349-CDS-Ecto-sp8_S_contig9899:2508..29401681145358.0190349-CDS-Ecto-sp8_S_contig9899:2508..2940Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9899 2509..2940 -
1681145358.0296466-CDS-Ecto-sp8_S_contig9899:3027..35701681145358.0296466-CDS-Ecto-sp8_S_contig9899:3027..3570Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9899 3028..3570 -
1681145358.0417254-CDS-Ecto-sp8_S_contig9899:4103..42981681145358.0417254-CDS-Ecto-sp8_S_contig9899:4103..4298Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9899 4104..4298 -
1681145358.052222-CDS-Ecto-sp8_S_contig9899:5276..53151681145358.052222-CDS-Ecto-sp8_S_contig9899:5276..5315Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9899 5277..5315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145358.0628686-UTR-Ecto-sp8_S_contig9899:5315..56071681145358.0628686-UTR-Ecto-sp8_S_contig9899:5315..5607Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9899 5316..5607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9899.31737.1

>prot_Ecto-sp8_S_contig9899.31737.1 ID=prot_Ecto-sp8_S_contig9899.31737.1|Name=mRNA_Ecto-sp8_S_contig9899.31737.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=565bp
MDLSPREEAELSTVSFPETPTPVTGIAAPGRAHSCHSRLANAGVVSAGKA
WGGDESTKANSSARNKCPLSPPRPRLKTACKPSPARSAAAVILATLLGGQ
QQPSPDDGTALPCLQAAVEDMANPTSSDNTNEGTTGAVLGAQPQQQWTGQ
QQQPGAEVATPVVVGREGAGGNAGGVEGLPRAAGQPQRLQWGAREDASVG
SPQRESPPPTSLGGDKGGETRQQGANHHGGGGGGGGGSGGGGGGGSGGSR
SAARGGGEGRSPRKRSYADGDRRCGDSSGEGRARSQLFGAGGGGGNNNNT
TTRGRDSKAPLPLPPPPPPPAVAGAWTPSPKGAAAGGGSVRSMAGPAASG
SGGNGRGDAVVTPSVPESGGGGGGLLFCREELGAAGSGLGDDLGYSSYCR
KDKSLGLLCGRFVEVYGHSQHFRDRVAAGGPVAGGGPAAAAATAAAAAEA
AAGGKEGDKGDGEEGMIELDKAAAELGVARRRIYDVINILESVCVVTRAR
KNTYRWHGKKNLILTLRQLQRTATHVFPEEVTKNGMTECLKQAKLIGNAV
GSLGGPRADGTKVK*
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mRNA from alignment at Ecto-sp8_S_contig9899:92..5607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9899.31737.1 ID=mRNA_Ecto-sp8_S_contig9899.31737.1|Name=mRNA_Ecto-sp8_S_contig9899.31737.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5516bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9899:92..5607- (Ectocarpus species8 EcLAC_412)
GTGTTGCCCTGACACGAGCCACACGTGTGCGCGCAAGGCCCCTTTGAGCG
TGGAAGCGTCAGCGAGCTCTACACAGCACAGCACAACCGAACGCGTCCTC
CCCTGACAACATTCACTGCTGGGGAACCGCGAAACCGCTACGCTCTCACC
TTCGCAAGCGCGCCCTCTCTTCCCACGCGCATCGAAGTTGAAATCGACCA
GCATCATCACCAGCATATTTCCGACAACAAACTGCGCGAAAGCAGCAACA
CGGCACAAAAGATTCAGAGTGGGCCAGGGCCATCGACTTGCGATGGATCT
GTCGCCTAGAGAGGAGGCAGAGCTTTCAACGGTAAGGGTTCCATGTGTAC
GACTGCTTGTGGGAGCGAGCCGACGTGATTTTTGTGTGGGTGATGTCGTC
ATGTACGACTCCCCGGAAATTTGAATTGTTTGCGCACACCCCGCAGAAAA
AAACGCGCGAAGCTCGCCATCCTTTCGGCCGCGAGCAAAATCGTCAACAA
CAACAATTGCCGGGAGGCCACCACTAAGATAATTGGCAGGATCGGAAGGG
GGGGTGGAAGAGAGAAGCACTAGACTGCTGTGTCGTACTTGGCCGTCTAC
TTGCGAAAAAGTAGGTCGGTACTCTCTCTCTCTCTCTCCCTCTCATGAGC
AATTGCGGCTGAGCCAGGTCTGTCGTGTGCGTTTATTTGAAAATCTGAGG
ATCGACCTCCACAGCAGTGTATCAAACCTGTGCTGCTGCCGCTGCACAAC
CAAAAAACGGATGCTGCACCTCTCTAGGTCGGCCTACCATACACATCATC
CTCAGCTAAACCGGAAGCGACCTGGGCCGCACGCGTGTGTGGCCTTTGTT
GTGTAGCGTTTTTCGATGCAATTTCGTGCCTTTCCCCCGCCCGCGCGCCA
TTTTTCATTTCAACTTGGTGTGCAGCCATGTCTCTACGCCAGGTTTTCTT
CCTCGTCCCGAAACCTTGTTCCACCTCTGGAAGCACGCTGCACTGCTGCA
GTCGCAAAAGAGGCGCTGCTGTGACGTTACGCTGGTGTCGGATCGGGGGC
AGTTTGCGCGCTTGCACAATTGCTGTGTCCAGCGCTGCTTGTGAGATCCC
TTCTCCATCGTCACAGCCATAATTTGTTTTTGAACTGCTGCTGTACGCAG
CAGCCCGATTCGTTCGATTTGCCGCGCGTCCTGGGTGTACCTCTGCTGCC
GCTGTGCCCTCATGCTACAGGGGCATTTGGCATCTCTTACTTGTTCGTGC
GGTACACTTCCCCTTGATCGCCTTTCGCAATGTCATCACTGCTGCCGCCG
TCCGCACAGGTTTCTTTTCCGGAGACACCGACACCTGTAACGGGCATTGC
AGCACCGGGCCGCGCTCATTCGTGCCACTCGAGGTTAGCCAACGCTGGCG
TTGTTAGCGCCGGCAAGGCCTGGGGCGGCGACGAGAGCACCAAGGCGAAC
AGCTCGGCGCGCAACAAGTGTCCTCTGTCTCCGCCAAGGCCGCGTTTGAA
AACAGTGAGCGAGCTTCTTTGCCGTCCGTCCGCAACAAACCGCCGGACCG
CCGTCCGCTTGATAAGTTTGGAATAGGAACAAAAACGAACTCACACAGCC
GATGGATGCTGCACCTGAAATAGTGTATCAACGCGCGCGGCCGTGCCCTC
TTTTTGCCATCCTTTTTTTTTATGTTCTGTTTCTGTTTCTCCCTCCGGCG
GGATGTAGGTCCAAGTTGGATAGGTTTTACGGTCATCACATGCTGCTGCT
GTATTATCTGTCGACATGTTATTTCGGGGCCTTGCATGTAGTCTCACCAC
AGGTGGTACGCATATATGTACCATCACAACATCACAACGCTGTTTGCGCT
GCTGTCACCAAGGTGCAGTCACTCTCCGGGTGGGATTGATCTCTTCCCCA
CCGACAGGCCTCCACCATTTCCCCCTCGAGAAGGCTTCGTTAAATCCGAG
CTCCCAACACTTCACGTGCGCATGTTCTTAAGCCCTGTCGTCGACCTTGT
CGTTTGTCCCACCTCTCTGTGTCGTTGCTTGCGCCAGGCTTGCAAGCCCA
GCCCGGCTAGAAGCGCGGCTGCTGTCATCCTCGCAACCCTCCTCGGCGGG
CAGCAGCAGCCGTCACCAGACGATGGCACGGCCTTACCGTGCCTGCAGGC
GGCGGTAGAAGACATGGCCAACCCAACCTCTTCCGACAACACCAACGAAG
GAACAACCGGGGCGGTGCTTGGCGCGCAGCCGCAGCAGCAGTGGACGGGT
CAGCAGCAGCAGCCGGGGGCAGAGGTCGCAACACCGGTGGTTGTCGGCCG
GGAGGGGGCCGGCGGTAACGCCGGCGGCGTGGAGGGGCTCCCGCGGGCGG
CGGGTCAGCCGCAACGCCTGCAGTGGGGGGCGCGCGAGGACGCCTCCGTT
GGTTCTCCGCAGAGGGAGTCGCCGCCGCCGACGTCTCTCGGCGGCGACAA
GGGCGGGGAGACCCGCCAACAAGGCGCCAATCACCACGGCGGCGGCGGAG
GTGGAGGCGGCGGCAGCGGCGGCGGTGGAGGAGGCGGCAGCGGCGGCAGC
AGGAGCGCCGCGCGAGGTGGTGGAGAAGGTGTTGCGGCCGGCTCGCCGCC
GACCTTCCCCGCAGCAGCAGGCTCCCCCTCTCCCGCCGCTGCCGGCGTGC
GCCGCTCCCCCCGACAGCGCTCGCCTCGCAAGCGGTCTTACGCCGACGGT
GACCGGCGTTGCGGCGATAGCAGCGGCGAAGGCCGGGCGCGGAGCCAGCT
CTTCGGCGCCGGTGGGGGTGGAGGTAACAACAACAATACCACCACCAGGG
GGAGGGACTCGAAAGCACCGCTCCCGCTCCCGCCACCGCCGCCGCCTCCC
GCGGTGGCCGGGGCTTGGACTCCATCGCCGAAGGGTGCCGCCGCCGGCGG
TGGTAGCGTAAGGTCGATGGCCGGCCCGGCAGCGAGCGGCAGCGGTGGCA
ACGGCCGGGGTGACGCCGTGGTGACGCCGTCGGTGCCGGAGAGTGGCGGC
GGCGGTGGCGGGCTACTCTTCTGTAGGGAGGAGCTTGGGGCGGCGGGATC
GGGGTTGGGGGACGACCTTGGGTACAGCAGCTACTGCCGGAAGGACAAGG
TGAGGTTCTTCGCTATTGGTACTTACGTGTTACCTGTGACGATGGTGTTC
CGGCCGCTTGTGAACTCGTTCGTACGTCTGGTTGACACGCTGCTGTGGAA
TGCAGCCAAGAACACTACTAAGGTGACACAACAAGAAGCTGTTGATCGAC
ACGTAGGAGAGTCGGGAGGGGAAGACATAGCGGTGGTGGGGGTCGCTTGA
CGATAAGCGTTCATGCAGAACAAACACCACCTCGTATATGGTGAATTTTT
ATTGGCATCAGGAGAGGTGCACGGAGATATTTATTGCTGGGGTTGCTGCT
TGATGCCCGTGGGTGCACAGGCCATCATGCCTTGTGTGTCAGACACGGCT
CATGCCACGACGAGGTCCTGCCGTGGCGTAAGTCTCTTGCCGCCTAGACC
CACACCGTCATGTCCATCGACCGGCAGAGCAATGTGGTCCAAGGCAGAGC
TCTGTCCTCGCGTGCTGCTTGCTTACCGTGTATATGTGACTCGGGCATCG
CTACATTTGCGGTCCCCGTTTTTACCGCTCGCTCCCTTTTCTAACGCGTA
AATCCCGACCGTGGAAACCGATATACAACGGTTGGACGTTTTTGGAACAA
AGCCATGTCCCCGTTTCCTGCTAGCTCCGACCGTTTTAACCTCCATCCCT
GGCGCACGCGCAATGATTGTTGGGACGATTTTGCTACAAAGTCACCCCCC
CGTTTCCCGCTCCCGCGTAAATTGAAACCGTATCCCTAACCGCACGCACA
ATGGTTGTTGGCCGTTTGTTGCCACGTGCGAAGTCTCTCGGCCTTCTCTG
CGGACGGTTTGTGGAGGTGTACGGGCACAGCCAGCACTTTCGGGACCGGG
TTGCGGCAGGCGGCCCCGTTGCGGGAGGCGGCCCCGCTGCCGCCGCTGCC
ACCGCCGCCGCCGCGGCCGAGGCGGCCGCGGGCGGTAAGGAGGGTGACAA
GGGGGATGGCGAGGAGGGGATGATCGAGCTCGACAAGGCAGCGGCCGAGC
TGGGGGTTGCAAGGCGCAGGATCTACGACGTGATCAACATCTTGGAGAGC
GTCTGTGTGGTCACCCGCGCGAGGAAGAACACGTACAGGTATGGCGGGAG
GGGTGGACGAGGAAAAGCAGCGAGCCGTGTCTGTTTGGGGTTGTTCGTTG
TTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTTTGATCGTTGTTGTTGTT
GTTGTTCTCGGTGGTGTTGGTGGTGATTGTTGTTGTTGTGGTTGTTGTCG
GTGGTGTTGGTGGTGGTGGCGATTGCAACAGTTGTTGTTGCGGATGCTGA
TTGGTCGTCGTTGTTATTGGAGGCGGTGGTAGTGGCAATGGTGGTGGCGG
TGGTTGGAGTTGGCCTCTACTGTTGGGGCAAGCTGGCTCGATGTTGTATG
ACGCCAGGCGGTACGTACGGTTAAGGCCGCGCGCAGATAGAAGCAAGCGA
ATTCTGGTACGGTATTGCAGCAAGGTATTTTCCTGCGTGCTTCTTTACCG
CTGCAGCATCTAACGTTTGTGGTCGTTGCTGTCGATCGGTGTCGTTGCTG
TTGGCACTGGTGCTGGTGCTGTTAATGTGCTGGTGCTGCTCGTTTTGTTC
GGCAACCCAGCATTTGTGTCTCAGAAAACCTTTGCATTGTTCATGTCAGT
AGCAACAACCAAACCTGTGTTTTGCACTGCATGTTTTGAGGTTGTACCGC
ATATATTGAGTTGTACCGCATATGGTTGTACCGCATATAGTGTAGTCGTA
CAGCGTTCGAAGGCGTACCATCCCATGACGATCCCTAAACCCCAGACGTT
CAAGCTGACGAATTTCCCGGTCATCATCCCTCCTCTCCCGGAACGTACCC
AACCGACCGCCGTTGTTGGTGCCGACGGCGGTGGTATGTCACGGATTGTT
GGACGGACCACGGTATCAATGGACAGGTGGCACGGCAAGAAGAACTTGAT
TCTGACCCTCCGACAGCTGCAGAGGACGGCCACCCATGTGTTCCCCGAAG
AAGTGACCAAGAACGGTAGGTGGTGGTAGCAGCAGCTGCACCACAGCAGA
GTAGATCTGTGAGGCATGGTATGGAATAGGAAGAAATCCATGTGTGTCTT
CTTGTCTTGTTTGTGGCCAGGTGGACGAGAGATGTGTCTTCTTCTATGTT
GTGTGTGTCTTCTTGTCTTGCTTGTGGCCACGTGGGCGGGAGAGTGGTTT
CTCTGTTGTGTGTATCTTCTTCGCTTGTTTGTGGCCGTGTGGGCGAGAGA
TGTGTCTTCTTCTTGAATTTCACTCTTGCATTTCTCGCACGCACATCCCG
TGCCCCCCCCCCCGTGATACCCAGGCATGACCGAGTGCCTCAAGCAGGCC
AAGCTCATTGGCAACGCGGTTGGTTCTCTCGGAGGTCCCAGGGCTGACGG
AACAAAGGTAAAATAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9899:92..5607-

>mRNA_Ecto-sp8_S_contig9899.31737.1 ID=mRNA_Ecto-sp8_S_contig9899.31737.1|Name=mRNA_Ecto-sp8_S_contig9899.31737.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1695bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9899:92..5607- (Ectocarpus species8 EcLAC_412)
ATGGATCTGTCGCCTAGAGAGGAGGCAGAGCTTTCAACGGTTTCTTTTCC
GGAGACACCGACACCTGTAACGGGCATTGCAGCACCGGGCCGCGCTCATT
CGTGCCACTCGAGGTTAGCCAACGCTGGCGTTGTTAGCGCCGGCAAGGCC
TGGGGCGGCGACGAGAGCACCAAGGCGAACAGCTCGGCGCGCAACAAGTG
TCCTCTGTCTCCGCCAAGGCCGCGTTTGAAAACAGCTTGCAAGCCCAGCC
CGGCTAGAAGCGCGGCTGCTGTCATCCTCGCAACCCTCCTCGGCGGGCAG
CAGCAGCCGTCACCAGACGATGGCACGGCCTTACCGTGCCTGCAGGCGGC
GGTAGAAGACATGGCCAACCCAACCTCTTCCGACAACACCAACGAAGGAA
CAACCGGGGCGGTGCTTGGCGCGCAGCCGCAGCAGCAGTGGACGGGTCAG
CAGCAGCAGCCGGGGGCAGAGGTCGCAACACCGGTGGTTGTCGGCCGGGA
GGGGGCCGGCGGTAACGCCGGCGGCGTGGAGGGGCTCCCGCGGGCGGCGG
GTCAGCCGCAACGCCTGCAGTGGGGGGCGCGCGAGGACGCCTCCGTTGGT
TCTCCGCAGAGGGAGTCGCCGCCGCCGACGTCTCTCGGCGGCGACAAGGG
CGGGGAGACCCGCCAACAAGGCGCCAATCACCACGGCGGCGGCGGAGGTG
GAGGCGGCGGCAGCGGCGGCGGTGGAGGAGGCGGCAGCGGCGGCAGCAGG
AGCGCCGCGCGAGGTGGTGGAGAAGGTCGCTCGCCTCGCAAGCGGTCTTA
CGCCGACGGTGACCGGCGTTGCGGCGATAGCAGCGGCGAAGGCCGGGCGC
GGAGCCAGCTCTTCGGCGCCGGTGGGGGTGGAGGTAACAACAACAATACC
ACCACCAGGGGGAGGGACTCGAAAGCACCGCTCCCGCTCCCGCCACCGCC
GCCGCCTCCCGCGGTGGCCGGGGCTTGGACTCCATCGCCGAAGGGTGCCG
CCGCCGGCGGTGGTAGCGTAAGGTCGATGGCCGGCCCGGCAGCGAGCGGC
AGCGGTGGCAACGGCCGGGGTGACGCCGTGGTGACGCCGTCGGTGCCGGA
GAGTGGCGGCGGCGGTGGCGGGCTACTCTTCTGTAGGGAGGAGCTTGGGG
CGGCGGGATCGGGGTTGGGGGACGACCTTGGGTACAGCAGCTACTGCCGG
AAGGACAAGTCTCTCGGCCTTCTCTGCGGACGGTTTGTGGAGGTGTACGG
GCACAGCCAGCACTTTCGGGACCGGGTTGCGGCAGGCGGCCCCGTTGCGG
GAGGCGGCCCCGCTGCCGCCGCTGCCACCGCCGCCGCCGCGGCCGAGGCG
GCCGCGGGCGGTAAGGAGGGTGACAAGGGGGATGGCGAGGAGGGGATGAT
CGAGCTCGACAAGGCAGCGGCCGAGCTGGGGGTTGCAAGGCGCAGGATCT
ACGACGTGATCAACATCTTGGAGAGCGTCTGTGTGGTCACCCGCGCGAGG
AAGAACACGTACAGGTGGCACGGCAAGAAGAACTTGATTCTGACCCTCCG
ACAGCTGCAGAGGACGGCCACCCATGTGTTCCCCGAAGAAGTGACCAAGA
ACGGCATGACCGAGTGCCTCAAGCAGGCCAAGCTCATTGGCAACGCGGTT
GGTTCTCTCGGAGGTCCCAGGGCTGACGGAACAAAGGTAAAATAG
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