mRNA_Ecto-sp8_S_contig98974.31734.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98974.31734.1
Unique NamemRNA_Ecto-sp8_S_contig98974.31734.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Match: D8LML3_ECTSI (Imidazole glycerol phosphate synthase hisHF n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.580e-20
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:   10 KVIVFPGVGSFGSAMETLNEKGFTGPLTEYIKQDRAFFGICLGMQ 144
            +VIVFPGVGSFGSAMETLN+KGFTGPLTEYIKQDRAFFGICLGMQ
Sbjct:   59 QVIVFPGVGSFGSAMETLNDKGFTGPLTEYIKQDRAFFGICLGMQ 103
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BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Match: A0A4D9DC80_9STRA (GATase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC80_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.520e-13
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   10 KVIVFPGVGSFGSAMETLNEKGFTGPLTEYIKQDRAFFGICLGMQ 144
            +VIVFPGVGSFGSAME L  +GFT PL +YI  DR +FGICLGMQ
Sbjct:   67 EVIVFPGVGSFGSAMEVLETRGFTQPLRDYILADRPYFGICLGMQ 111
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BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Match: A0A7S3DLQ0_9STRA (Imidazole glycerol phosphate synthase hisHF n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DLQ0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.150e-12
Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   10 KVIVFPGVGSFGSAMETLNEKGFTGPLTEYIKQ-DRAFFGICLGMQ 144
            KVIVFPGVGSFGSAM  L EKGF GPL EY+    R FFGICLGMQ
Sbjct:   43 KVIVFPGVGSFGSAMRVLKEKGFDGPLREYLTDCKRPFFGICLGMQ 88
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BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Match: A0A5A8EEQ6_CAFRO (Imidazole glycerol phosphate synthase hisHF n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EEQ6_CAFRO)

HSP 1 Score: 69.3 bits (168), Expect = 1.580e-12
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   10 KVIVFPGVGSFGSAMETLNEKGFTGPLTEYIKQDRAFFGICLGMQ 144
            KV+VFPGVG+FGSAMETL  +GF  PL EY+  DR F GIC+GMQ
Sbjct:   52 KVLVFPGVGAFGSAMETLTARGFAEPLKEYLAADRPFLGICIGMQ 96
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BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Match: A0A5A8CIG5_CAFRO (Acetyl-CoA hydrolase n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8CIG5_CAFRO)

HSP 1 Score: 69.3 bits (168), Expect = 1.580e-12
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   10 KVIVFPGVGSFGSAMETLNEKGFTGPLTEYIKQDRAFFGICLGMQ 144
            KV+VFPGVG+FGSAMETL  +GF  PL EY+  DR F GIC+GMQ
Sbjct:   52 KVLVFPGVGAFGSAMETLTARGFAEPLKEYLAADRPFLGICIGMQ 96
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BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Match: A0A7S1XZU5_9STRA (Imidazole glycerol phosphate synthase hisHF n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZU5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.150e-12
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 AWTKVIVFPGVGSFGSAMETLNEKGFTGPLTEYIKQDRAFFGICLGMQ 144
            A  +VIVFPGVG+FGSAME+L+  G+T PL EY++  R +FGICLGMQ
Sbjct:   69 AEARVIVFPGVGAFGSAMESLDSHGYTEPLKEYLRSGRPYFGICLGMQ 116
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BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Match: A0A7C3CKM5_9BACT (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Thermosulfurimonas dismutans TaxID=999894 RepID=A0A7C3CKM5_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 2.940e-12
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   16 IVFPGVGSFGSAMETLNEKGFTGPLTEYIKQDRAFFGICLGMQV 147
            +VFPGVG+FGS M  LNEKGF  PL EY++Q+R F GICLG+QV
Sbjct:   42 LVFPGVGNFGSIMRALNEKGFVEPLREYLRQNRPFLGICLGLQV 85
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BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Match: A0A8J9TNB6_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TNB6_PHATR)

HSP 1 Score: 67.0 bits (162), Expect = 3.030e-12
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 AWTKVIVFPGVGSFGSAMETLNEKGFTGPLTEYIK-QDRAFFGICLGMQ 144
            A  K I+FPGVGSFGSAM  L EKGF GPL  Y+   DR F GICLGMQ
Sbjct:   40 AQAKAIIFPGVGSFGSAMRVLQEKGFDGPLRTYLSAHDRPFLGICLGMQ 88
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BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Match: A7SPR8_NEMVE (Predicted protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7SPR8_NEMVE)

HSP 1 Score: 68.2 bits (165), Expect = 4.020e-12
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   16 IVFPGVGSFGSAMETLNEKGFTGPLTEYIKQDRAFFGICLGMQV 147
            ++ PGVG+FGSAM+ L +KGF  PL EYIKQDR F GICLGMQ+
Sbjct:   30 LILPGVGAFGSAMKRLQDKGFVEPLQEYIKQDRPFIGICLGMQM 73
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BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Match: A0A7S2RIR9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RIR9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.020e-12
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   13 VIVFPGVGSFGSAMETLNEKGFTGPLTEYIKQDRAFFGICLGMQ 144
            V+VFPGVGSFG AM  L  +GF  PL EYIK D+ FFGICLGMQ
Sbjct:   45 VLVFPGVGSFGDAMRKLKSEGFVEPLKEYIKSDKRFFGICLGMQ 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98974.31734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LML3_ECTSI1.580e-2095.56Imidazole glycerol phosphate synthase hisHF n=2 Ta... [more]
A0A4D9DC80_9STRA4.520e-1373.33GATase domain-containing protein n=1 Tax=Nannochlo... [more]
A0A7S3DLQ0_9STRA1.150e-1276.09Imidazole glycerol phosphate synthase hisHF n=1 Ta... [more]
A0A5A8EEQ6_CAFRO1.580e-1268.89Imidazole glycerol phosphate synthase hisHF n=2 Ta... [more]
A0A5A8CIG5_CAFRO1.580e-1268.89Acetyl-CoA hydrolase n=4 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S1XZU5_9STRA2.150e-1264.58Imidazole glycerol phosphate synthase hisHF n=2 Ta... [more]
A0A7C3CKM5_9BACT2.940e-1268.18Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A8J9TNB6_PHATR3.030e-1267.35Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A7SPR8_NEMVE4.020e-1268.18Predicted protein n=3 Tax=Nematostella vectensis T... [more]
A0A7S2RIR9_9STRA4.020e-1270.45Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98974contigEcto-sp8_S_contig98974:353..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score92.8
Seed ortholog evalue4.7e-17
Seed eggNOG ortholog2880.D8LML3
Preferred nameHIS7
Model size147
KEGG rclassRC00010,RC00074,RC01190,RC01943
KEGG koko:K01493,ko:K01663
KEGG ReactionR01663,R04558
KEGG Pathwayko00240,ko00340,ko01100,ko01110,ko01230,map00240,map00340,map01100,map01110,map01230
KEGG ModuleM00026,M00429
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000105,GO:0000107,GO:0003674,GO:0003824,GO:0004359,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0016810,GO:0016811,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons1
EggNOG free text desc.imidazoleglycerol-phosphate synthase activity
EggNOG OGsCOG0107@1,KOG0623@2759
EC3.5.4.12
Cds size147
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.8604136-CDS-Ecto-sp8_S_contig98974:352..4991681145357.8604136-CDS-Ecto-sp8_S_contig98974:352..499Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98974 353..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98974.31734.1prot_Ecto-sp8_S_contig98974.31734.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98974 353..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98974.31734.1

>prot_Ecto-sp8_S_contig98974.31734.1 ID=prot_Ecto-sp8_S_contig98974.31734.1|Name=mRNA_Ecto-sp8_S_contig98974.31734.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=49bp
AWTKVIVFPGVGSFGSAMETLNEKGFTGPLTEYIKQDRAFFGICLGMQV
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mRNA from alignment at Ecto-sp8_S_contig98974:353..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98974.31734.1 ID=mRNA_Ecto-sp8_S_contig98974.31734.1|Name=mRNA_Ecto-sp8_S_contig98974.31734.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98974:353..499+ (Ectocarpus species8 EcLAC_412)
GCTTGGACGAAGGTGATCGTGTTCCCCGGTGTGGGATCGTTCGGCAGCGC
GATGGAGACCCTCAACGAAAAGGGCTTCACGGGGCCCCTGACGGAGTACA
TCAAGCAGGACCGCGCTTTCTTCGGCATCTGCCTGGGCATGCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98974:353..499+

>mRNA_Ecto-sp8_S_contig98974.31734.1 ID=mRNA_Ecto-sp8_S_contig98974.31734.1|Name=mRNA_Ecto-sp8_S_contig98974.31734.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98974:353..499+ (Ectocarpus species8 EcLAC_412)
GCTTGGACGAAGGTGATCGTGTTCCCCGGTGTGGGATCGTTCGGCAGCGC
GATGGAGACCCTCAACGAAAAGGGCTTCACGGGGCCCCTGACGGAGTACA
TCAAGCAGGACCGCGCTTTCTTCGGCATCTGCCTGGGCATGCAGGTG
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