mRNA_Ecto-sp8_S_contig98967.31732.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98967.31732.1
Unique NamemRNA_Ecto-sp8_S_contig98967.31732.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Match: D8LFA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA2_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.000e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:   22 KLPESGVTDEEVHAIAALLRGNSTIAELNLRGN 120
            +LPESGVTDEEVHAIAALLRGNSTIAELNLRGN
Sbjct:  719 QLPESGVTDEEVHAIAALLRGNSTIAELNLRGN 751
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BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Match: A0A7S2WAY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAY3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.480e-9
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   22 KLPESGVTDEEVHAIAALLRGNSTIAELNLRGN 120
            +LPESG+TDEEVHA+AALLRGN +IA+LNLR N
Sbjct:  122 QLPESGITDEEVHAVAALLRGNGSIADLNLRSN 154
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BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Match: A0A7S1XN37_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XN37_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.040e-8
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   22 KLPESGVTDEEVHAIAALLRGNSTIAELNLRGNE 123
            +LPESG+ DEEVHAIAALLRGN+TI ELNLRGN+
Sbjct:  694 QLPESGLGDEEVHAIAALLRGNTTIQELNLRGNK 727
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BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Match: A0A1V9ZR60_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZR60_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.620e-6
Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   16 TQKLPESGVTDEEVHAIAALLRGNSTIAELNLRGN 120
            T KLPESGV DEEVHAIAALLR NSTI EL L  N
Sbjct:  676 TLKLPESGVGDEEVHAIAALLRTNSTIQELQLAAN 710
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BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Match: A0A485LEN8_9STRA (Aste57867_19820 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEN8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.620e-6
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   22 KLPESGVTDEEVHAIAALLRGNSTIAELNLRGN 120
            KLPESG+ DEEVHAIAALLR NS+I EL L GN
Sbjct:  692 KLPESGIGDEEVHAIAALLRNNSSIHELQLHGN 724
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BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Match: A0A2D4BCY9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BCY9_PYTIN)

HSP 1 Score: 53.1 bits (126), Expect = 2.220e-6
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   22 KLPESGVTDEEVHAIAALLRGNSTIAELNLRGNE 123
            KLPESGV DEEVHAIAALLR  S + EL LRGN+
Sbjct:  710 KLPESGVGDEEVHAIAALLRNASNVRELQLRGNQ 743
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BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Match: A0A662XEA5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XEA5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.220e-6
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   22 KLPESGVTDEEVHAIAALLRGNSTIAELNLRGN 120
            KLPESGV DEEVHAIAALLR  +T+ EL LRGN
Sbjct:  687 KLPESGVGDEEVHAIAALLRNAATVRELQLRGN 719
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BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Match: A0A397FFH5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FFH5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.130e-6
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   22 KLPESGVTDEEVHAIAALLRGNSTIAELNLRGN 120
            KLPESG+ DEEVHAIAALLR NS+I +L L GN
Sbjct:  640 KLPESGIGDEEVHAIAALLRNNSSIHDLQLHGN 672
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BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Match: A0A067CCX6_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CCX6_SAPPC)

HSP 1 Score: 52.4 bits (124), Expect = 4.140e-6
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   22 KLPESGVTDEEVHAIAALLRGNSTIAELNLRGN 120
            KLPESGV DEEVHAIAALLR NS+I EL L+ N
Sbjct:  569 KLPESGVGDEEVHAIAALLRSNSSIQELQLQSN 601
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BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Match: A0A8K1CIR8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIR8_PYTOL)

HSP 1 Score: 52.4 bits (124), Expect = 4.160e-6
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   22 KLPESGVTDEEVHAIAALLRGNSTIAELNLRGN 120
            KLPESGV DEEVHAIAALLR  S + EL LRGN
Sbjct:  696 KLPESGVGDEEVHAIAALLRNASNVKELQLRGN 728
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98967.31732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LFA2_ECTSI1.000e-1096.97Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A7S2WAY3_9STRA8.480e-978.79Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1XN37_9STRA2.040e-882.35Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9ZR60_9STRA1.620e-680.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485LEN8_9STRA1.620e-678.79Aste57867_19820 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4BCY9_PYTIN2.220e-676.47Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A662XEA5_9STRA2.220e-678.79Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A397FFH5_9STRA4.130e-675.76Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A067CCX6_SAPPC4.140e-678.79Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A8K1CIR8_PYTOL4.160e-678.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98967contigEcto-sp8_S_contig98967:3..539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score65.5
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D8LFA2
Model size219
KEGG koko:K10352
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28IV4@1,2QR6T@2759
Cds size219
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.7727497-CDS-Ecto-sp8_S_contig98967:2..1251681145357.7727497-CDS-Ecto-sp8_S_contig98967:2..125Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98967 3..125 +
1681145357.7844818-CDS-Ecto-sp8_S_contig98967:443..5391681145357.7844818-CDS-Ecto-sp8_S_contig98967:443..539Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98967 444..539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98967.31732.1prot_Ecto-sp8_S_contig98967.31732.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98967 3..539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98967.31732.1

>prot_Ecto-sp8_S_contig98967.31732.1 ID=prot_Ecto-sp8_S_contig98967.31732.1|Name=mRNA_Ecto-sp8_S_contig98967.31732.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=73bp
MPLLTTQKLPESGVTDEEVHAIAALLRGNSTIAELNLRGNEITDEGASAL
GAVLAGRMGLRSVDLRSNRISKQ
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mRNA from alignment at Ecto-sp8_S_contig98967:3..539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98967.31732.1 ID=mRNA_Ecto-sp8_S_contig98967.31732.1|Name=mRNA_Ecto-sp8_S_contig98967.31732.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=537bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98967:3..539+ (Ectocarpus species8 EcLAC_412)
ATGCCGTTGCTGACAACGCAAAAGTTGCCCGAAAGCGGTGTGACAGATGA
GGAAGTCCATGCCATTGCCGCCTTGCTGAGAGGAAATTCGACTATCGCCG
AGCTGAACCTGAGGGGCAACGAGGTGCAAAACATTGGCACCTTACTTGGT
TGGAGCGTGGTAATAAGTAACGAGGAGGCTGGGGGTGTGGGGTGGGAATT
GTTGGTAGAGATAGTAAGATCATGGAGAAACTATGACTATTGGACCTGAG
ATCGACATCCTGTCGAAGCGAAGGTAGCGATACCCCCCGTTCTCCCCTCA
GTCCGGGCTGTTGTGGGGGTGTGAGGGCCCATGCGTGAAGATGAGTATCC
CCAGCCCCCCTACACTCTTCTAGAGTGATGCCGCGGTGTAGGAGTACTTT
GCAAACTGAATGCTCAATCTTGTCACGTGGTCATATAATAGATTACGGAC
GAGGGCGCTTCCGCTCTGGGAGCAGTGCTGGCGGGAAGGATGGGACTGCG
GTCGGTGGACCTTCGAAGCAACAGAATATCCAAACAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98967:3..539+

>mRNA_Ecto-sp8_S_contig98967.31732.1 ID=mRNA_Ecto-sp8_S_contig98967.31732.1|Name=mRNA_Ecto-sp8_S_contig98967.31732.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98967:3..539+ (Ectocarpus species8 EcLAC_412)
ATGCCGTTGCTGACAACGCAAAAGTTGCCCGAAAGCGGTGTGACAGATGA
GGAAGTCCATGCCATTGCCGCCTTGCTGAGAGGAAATTCGACTATCGCCG
AGCTGAACCTGAGGGGCAACGAGATTACGGACGAGGGCGCTTCCGCTCTG
GGAGCAGTGCTGGCGGGAAGGATGGGACTGCGGTCGGTGGACCTTCGAAG
CAACAGAATATCCAAACAG
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