mRNA_Ecto-sp8_S_contig9894.31728.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9894.31728.1
Unique NamemRNA_Ecto-sp8_S_contig9894.31728.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9894.31728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9894contigEcto-sp8_S_contig9894:3085..3402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size319
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.5112233-CDS-Ecto-sp8_S_contig9894:3084..34021681145357.5112233-CDS-Ecto-sp8_S_contig9894:3084..3402Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9894 3085..3402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9894.31728.1prot_Ecto-sp8_S_contig9894.31728.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9894 3085..3402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9894.31728.1

>prot_Ecto-sp8_S_contig9894.31728.1 ID=prot_Ecto-sp8_S_contig9894.31728.1|Name=mRNA_Ecto-sp8_S_contig9894.31728.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=106bp
PTTSTTGRNNTISTTPPAPTRPGNDLWCPPFTTVRILPFEACVRWIHAAA
GVRKLSPKTLALKQDRKRHCAVYRLTTNNRNLNGNTLAHTRKSMWFHNKK
AVPGME
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mRNA from alignment at Ecto-sp8_S_contig9894:3085..3402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9894.31728.1 ID=mRNA_Ecto-sp8_S_contig9894.31728.1|Name=mRNA_Ecto-sp8_S_contig9894.31728.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=318bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9894:3085..3402+ (Ectocarpus species8 EcLAC_412)
CCCACAACATCGACAACCGGCCGAAACAACACAATATCAACAACTCCCCC
GGCCCCTACAAGACCAGGCAACGATTTGTGGTGCCCACCGTTTACTACGG
TACGGATTCTTCCATTCGAGGCGTGCGTGCGTTGGATCCACGCCGCCGCG
GGCGTTCGGAAACTTTCCCCGAAGACGCTTGCTCTCAAACAAGACAGAAA
GCGACATTGTGCGGTCTACCGACTGACGACAAATAATCGTAACCTCAATG
GCAATACTCTTGCACATACTCGGAAAAGCATGTGGTTTCACAACAAAAAG
GCAGTTCCTGGAATGGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9894:3085..3402+

>mRNA_Ecto-sp8_S_contig9894.31728.1 ID=mRNA_Ecto-sp8_S_contig9894.31728.1|Name=mRNA_Ecto-sp8_S_contig9894.31728.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9894:3085..3402+ (Ectocarpus species8 EcLAC_412)
CCCACAACATCGACAACCGGCCGAAACAACACAATATCAACAACTCCCCC
GGCCCCTACAAGACCAGGCAACGATTTGTGGTGCCCACCGTTTACTACGG
TACGGATTCTTCCATTCGAGGCGTGCGTGCGTTGGATCCACGCCGCCGCG
GGCGTTCGGAAACTTTCCCCGAAGACGCTTGCTCTCAAACAAGACAGAAA
GCGACATTGTGCGGTCTACCGACTGACGACAAATAATCGTAACCTCAATG
GCAATACTCTTGCACATACTCGGAAAAGCATGTGGTTTCACAACAAAAAG
GCAGTTCCTGGAATGGAG
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