mRNA_Ecto-sp8_S_contig98830.31716.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98830.31716.1
Unique NamemRNA_Ecto-sp8_S_contig98830.31716.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Match: D7FW50_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW50_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 1.750e-90
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
Query:    1 YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNNGPMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ 450
            YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNNGPMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ
Sbjct: 2874 YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNNGPMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ 3023          
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Match: A0A6H5JUN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN5_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 3.730e-89
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 1
Query:    1 YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNNGPMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQV 453
            YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTL E+KENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNNGPMPMS AADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQV
Sbjct: 1587 YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLLEDKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNNGPMPMSVAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQV 1737          
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Match: A0A7S2FVH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FVH1_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.760e-46
Identity = 86/149 (57.72%), Postives = 107/149 (71.81%), Query Frame = 1
Query:   10 AEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVN--NGPMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ 450
            A   KQEA  T  +G+ K+ELA RL ++L  E ERWA  V  LRE+K+ L+GDVL+A AF+SY GPFTKPFR+ L++ ++LP +AK      G  P+S + DPL +L N + IA WNS GLPAD VSSENGAIV + ARWPLIIDPQLQ
Sbjct:   46 ANASKQEALDTVAKGQLKLELANRLTNALAAENERWAENVLVLREKKQLLIGDVLLAVAFISYAGPFTKPFRDSLMEGKFLPFLAKEFAPAEGIKPLSESCDPLHILANASMIAGWNSDGLPADRVSSENGAIVCSTARWPLIIDPQLQ 194          
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Match: A0A7S2BR21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BR21_9STRA)

HSP 1 Score: 162 bits (411), Expect = 9.420e-46
Identity = 82/145 (56.55%), Postives = 108/145 (74.48%), Query Frame = 1
Query:   22 KQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAK--SVNNGPMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ 450
            K+EA  T E+G+TK++LA RL ++L  E +RWA  ++ L++++  L GDVL+ASAF+SYVGPFTKPFR++L+ E + P +    +   G  P+S  +D L +LTN AEIA WNS GLPAD VS+ENGAIV N ARWPLIIDPQLQ
Sbjct:  223 KKEALDTVEKGQTKLDLANRLTTALASENDRWAINIEVLQQDRTLLTGDVLLASAFISYVGPFTKPFRDKLMDEMFTPFLQAEFAAFEGVTPLSETSDCLNILTNGAEIAGWNSDGLPADQVSTENGAIVCNSARWPLIIDPQLQ 367          
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Match: A0A5A8EH26_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EH26_CAFRO)

HSP 1 Score: 167 bits (424), Expect = 2.920e-45
Identity = 84/152 (55.26%), Postives = 111/152 (73.03%), Query Frame = 1
Query:    1 YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNN--GPMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ 450
            ++ A  EK EA+AT ++G+TK++LA RL ++L  E  RWA GV+ L+ E+E L GDVL+A+AF+SY+GPFTK FRE++   + +P M  SV      +PMS  ADPL +LT+EA+IA W S+GLP D VS ENG IV N ARWPL+IDPQLQ
Sbjct: 2904 FDAANAEKAEAEATVQKGQTKLDLANRLTTALATENVRWAEGVEVLKSERELLTGDVLLAAAFISYIGPFTKRFREEIFDRELVPFMRASVEGLEDGIPMSVTADPLHILTDEAQIASWLSEGLPDDSVSKENGCIVTNTARWPLMIDPQLQ 3055          
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Match: D7FRX0_ECTSI (Dynein heavy chain family dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX0_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.640e-43
Identity = 83/152 (54.61%), Postives = 108/152 (71.05%), Query Frame = 1
Query:   10 AEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVN-----NGPMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ 450
            A  +KQEA  +  +G+ K++LA+RL  +L  E +RWA  V  LR + E L GDVL+A+AF+SYVGPFTK FR+QL+ +++LP + K         G +PMSA  DP++ LT +AE+A WNS GLP D VS+ENGAIV N ARWPLIIDPQLQ
Sbjct: 2642 ANKDKQEALESVSKGQRKLDLAQRLTGALSSENDRWAENVIQLRADMELLTGDVLLAAAFISYVGPFTKTFRDQLMGQEFLPFLQKEFQAAVGEEGSLPMSADPDPIKTLTTDAEVAGWNSDGLPNDQVSTENGAIVTNSARWPLIIDPQLQ 2793          
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Match: A0A2D4CBN7_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBN7_PYTIN)

HSP 1 Score: 162 bits (410), Expect = 2.190e-43
Identity = 76/159 (47.80%), Postives = 115/159 (72.33%), Query Frame = 1
Query:    1 YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNNG---------PMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ 450
            +E+   + Q+A A  E+G+ +I+LA RL ++LG E+ RWA+ ++ L+   E L+GDVL+A++F+SY+G FTKP+R+ L+ EQW+P + K+VN G          +PMS   +PL++L  ++EIA+WN++GLP+D VS ENGAIV N  RWPL++DPQLQ
Sbjct:  699 FEQTNRDVQDAIAAVEKGRLRIQLATRLTAALGSESARWASDLEVLKGSAEMLIGDVLIAASFVSYIGGFTKPYRDLLISEQWIPFLRKAVNRGGSGKNAKRESLPMSEVCNPLQILATDSEIAEWNTRGLPSDRVSIENGAIVRNSTRWPLLVDPQLQ 857          
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Match: A0A2D4C8N8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8N8_PYTIN)

HSP 1 Score: 162 bits (410), Expect = 2.220e-43
Identity = 76/159 (47.80%), Postives = 115/159 (72.33%), Query Frame = 1
Query:    1 YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNNG---------PMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ 450
            +E+   + Q+A A  E+G+ +I+LA RL ++LG E+ RWA+ ++ L+   E L+GDVL+A++F+SY+G FTKP+R+ L+ EQW+P + K+VN G          +PMS   +PL++L  ++EIA+WN++GLP+D VS ENGAIV N  RWPL++DPQLQ
Sbjct: 2184 FEQTNRDVQDAIAAVEKGRLRIQLATRLTAALGSESARWASDLEVLKGSAEMLIGDVLIAASFVSYIGGFTKPYRDLLISEQWIPFLRKAVNRGGSGKNAKREALPMSEVCNPLQILATDSEIAEWNTRGLPSDRVSIENGAIVRNSTRWPLLVDPQLQ 2342          
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Match: A0A836CGE4_9STRA (Dynein heavy chain family dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE4_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.230e-43
Identity = 85/160 (53.12%), Postives = 115/160 (71.88%), Query Frame = 1
Query:    1 YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKS------VNNGPM----PMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ 450
            ++ A  EKQ A  +  +G+ K++LA+RL S+L  E +RWA  V+ LR + E L GDVL+AS+F+SYVGPFTKPFRE+L++ ++LP + K       V  G      PMSA  +P+R+LT +AE+A WN+QGLPAD +S+ENG+IV N ARWPLIIDPQLQ
Sbjct: 2722 FDAANAEKQAALDSVAKGQIKLDLAQRLTSALASENDRWAVNVQQLRADMELLTGDVLLASSFISYVGPFTKPFREKLMEGEFLPFLRKEFAAVGLVAGGEAGAGAPMSAHPEPIRILTTDAEVAGWNTQGLPADHMSTENGSIVCNSARWPLIIDPQLQ 2881          
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Match: A0A7S2QV08_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QV08_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.990e-43
Identity = 77/139 (55.40%), Postives = 102/139 (73.38%), Query Frame = 1
Query:   34 QATYERGKTKIELARRLVSSLGGETERWATGVKTLREEKENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNNGPMPMSAAADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ 450
            Q T  +GK K+ELA+RL ++LG E  RW  G+  L ++K+ +VGD L+A+AF+SYVGPFTK FR  L++E WLP +  +    P+ MS   +PL  LT EA+IA WN++GLP+DPVSSENG IV N +RWPL+IDPQLQ
Sbjct:  837 QETSSKGKMKLELAQRLTNALGSEGARWNLGIDDLEKKKDLVVGDSLLAAAFISYVGPFTKNFRTMLMQEHWLPFLKTAAKGQPIAMSEDCNPLNTLTTEAQIAGWNTEGLPSDPVSSENGTIVCNSSRWPLLIDPQLQ 975          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98830.31716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW50_ECTSI1.750e-90100.00Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JUN5_9PHAE3.730e-8998.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FVH1_9STRA2.760e-4657.72Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2BR21_9STRA9.420e-4656.55Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A5A8EH26_CAFRO2.920e-4555.26Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
D7FRX0_ECTSI1.640e-4354.61Dynein heavy chain family dynein heavy chain n=1 T... [more]
A0A2D4CBN7_PYTIN2.190e-4347.80Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A2D4C8N8_PYTIN2.220e-4347.80Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A836CGE4_9STRA2.230e-4353.13Dynein heavy chain family dynein heavy chain n=1 T... [more]
A0A7S2QV08_9STRA2.990e-4355.40Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98830contigEcto-sp8_S_contig98830:20..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score298.5
Seed ortholog evalue1.7e-78
Seed eggNOG ortholog2880.D7FW50
Preferred nameODA-DHCA
Model size453
KEGG koko:K10408,ko:K10706,ko:K20285
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
Exons1
EggNOG free text desc.Galactose oxidase, central domain
EggNOG OGsCOG5245@1,KOG1230@1,KOG1230@2759,KOG3595@2759
Cds size453
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145356.7410302-CDS-Ecto-sp8_S_contig98830:19..4721681145356.7410302-CDS-Ecto-sp8_S_contig98830:19..472Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98830 20..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98830.31716.1prot_Ecto-sp8_S_contig98830.31716.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98830 20..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98830.31716.1

>prot_Ecto-sp8_S_contig98830.31716.1 ID=prot_Ecto-sp8_S_contig98830.31716.1|Name=mRNA_Ecto-sp8_S_contig98830.31716.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=151bp
YERAEGEKQEAQATYERGKTKIELARRLVSSLGGETERWATGVKTLREEK
ENLVGDVLVASAFLSYVGPFTKPFREQLVKEQWLPVMAKSVNNGPMPMSA
AADPLRVLTNEAEIAKWNSQGLPADPVSSENGAIVDNCARWPLIIDPQLQ
V
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mRNA from alignment at Ecto-sp8_S_contig98830:20..472-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98830.31716.1 ID=mRNA_Ecto-sp8_S_contig98830.31716.1|Name=mRNA_Ecto-sp8_S_contig98830.31716.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98830:20..472- (Ectocarpus species8 EcLAC_412)
TATGAGAGGGCAGAGGGCGAAAAGCAAGAGGCGCAAGCCACGTATGAGCG GGGAAAGACCAAGATAGAGCTGGCGAGGCGCCTCGTGTCGAGCCTGGGAG GAGAGACGGAGCGCTGGGCAACAGGAGTGAAAACGTTGAGGGAGGAGAAG GAAAATCTTGTCGGTGATGTTCTTGTCGCAAGCGCATTCCTCAGCTATGT CGGTCCCTTCACCAAGCCTTTCCGGGAGCAGTTGGTGAAAGAGCAGTGGC TCCCGGTCATGGCAAAATCCGTAAACAACGGTCCCATGCCCATGAGCGCT GCAGCTGACCCACTACGTGTTTTGACGAACGAAGCCGAGATCGCCAAGTG GAACTCCCAAGGACTACCCGCTGATCCTGTGTCGTCAGAAAATGGAGCAA TCGTGGACAACTGTGCGCGTTGGCCTCTCATAATTGATCCACAGCTTCAG GTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98830:20..472-

>mRNA_Ecto-sp8_S_contig98830.31716.1 ID=mRNA_Ecto-sp8_S_contig98830.31716.1|Name=mRNA_Ecto-sp8_S_contig98830.31716.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98830:20..472- (Ectocarpus species8 EcLAC_412)
TATGAGAGGGCAGAGGGCGAAAAGCAAGAGGCGCAAGCCACGTATGAGCG
GGGAAAGACCAAGATAGAGCTGGCGAGGCGCCTCGTGTCGAGCCTGGGAG
GAGAGACGGAGCGCTGGGCAACAGGAGTGAAAACGTTGAGGGAGGAGAAG
GAAAATCTTGTCGGTGATGTTCTTGTCGCAAGCGCATTCCTCAGCTATGT
CGGTCCCTTCACCAAGCCTTTCCGGGAGCAGTTGGTGAAAGAGCAGTGGC
TCCCGGTCATGGCAAAATCCGTAAACAACGGTCCCATGCCCATGAGCGCT
GCAGCTGACCCACTACGTGTTTTGACGAACGAAGCCGAGATCGCCAAGTG
GAACTCCCAAGGACTACCCGCTGATCCTGTGTCGTCAGAAAATGGAGCAA
TCGTGGACAACTGTGCGCGTTGGCCTCTCATAATTGATCCACAGCTTCAG
GTA
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