mRNA_Ecto-sp8_S_contig9883.31714.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9883.31714.1
Unique NamemRNA_Ecto-sp8_S_contig9883.31714.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9883.31714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9883contigEcto-sp8_S_contig9883:1002..1510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size509
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145356.5745375-UTR-Ecto-sp8_S_contig9883:1001..11801681145356.5745375-UTR-Ecto-sp8_S_contig9883:1001..1180Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9883 1002..1180 +
1681145356.6002185-UTR-Ecto-sp8_S_contig9883:1486..15101681145356.6002185-UTR-Ecto-sp8_S_contig9883:1486..1510Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9883 1487..1510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145356.5885794-CDS-Ecto-sp8_S_contig9883:1180..14861681145356.5885794-CDS-Ecto-sp8_S_contig9883:1180..1486Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9883 1181..1486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9883.31714.1prot_Ecto-sp8_S_contig9883.31714.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9883 1181..1486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9883.31714.1

>prot_Ecto-sp8_S_contig9883.31714.1 ID=prot_Ecto-sp8_S_contig9883.31714.1|Name=mRNA_Ecto-sp8_S_contig9883.31714.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=102bp
MPSLKANKKVAGGDRRPHHDKARSGASYDTSCSITTVRRRYVRMQPVFQC
FLTLLVLEAFLGTIWGHFWDTALKFLFSRTKVNLGSAVCNVRENPWSIML
G*
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mRNA from alignment at Ecto-sp8_S_contig9883:1002..1510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9883.31714.1 ID=mRNA_Ecto-sp8_S_contig9883.31714.1|Name=mRNA_Ecto-sp8_S_contig9883.31714.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=509bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9883:1002..1510+ (Ectocarpus species8 EcLAC_412)
GTTTCAAGAAAATCAATCAGAACGCTCGCACACACAGACGTGATTGGACT
AATGTACAAAACGGTGGCAGGAACAACTTTGTCGACCTTTTCACAACCAC
AACAGGCGAAGATGAAAACTAAAACCTATCAACAACAACCGCTGCCCGAA
TATGGTTGCGAGAACTTTGTACTACATACATGCCCTCCCTCAAAGCCAAC
AAAAAAGTCGCTGGTGGAGACCGTCGTCCCCACCACGACAAAGCGCGGAG
TGGCGCCAGCTACGACACGAGCTGCTCCATAACAACGGTTCGTCGCCGGT
ATGTTCGCATGCAACCCGTGTTTCAATGCTTCTTAACCCTCCTAGTACTG
GAAGCCTTTTTGGGGACGATTTGGGGACACTTTTGGGACACAGCACTCAA
ATTCCTATTTTCCCGCACTAAAGTCAACCTAGGCTCCGCTGTATGCAACG
TACGTGAGAACCCTTGGTCTATCATGCTTGGCTGAGGTAGTACGCTGTGT
GATATGCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9883:1002..1510+

>mRNA_Ecto-sp8_S_contig9883.31714.1 ID=mRNA_Ecto-sp8_S_contig9883.31714.1|Name=mRNA_Ecto-sp8_S_contig9883.31714.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9883:1002..1510+ (Ectocarpus species8 EcLAC_412)
ATGCCCTCCCTCAAAGCCAACAAAAAAGTCGCTGGTGGAGACCGTCGTCC
CCACCACGACAAAGCGCGGAGTGGCGCCAGCTACGACACGAGCTGCTCCA
TAACAACGGTTCGTCGCCGGTATGTTCGCATGCAACCCGTGTTTCAATGC
TTCTTAACCCTCCTAGTACTGGAAGCCTTTTTGGGGACGATTTGGGGACA
CTTTTGGGACACAGCACTCAAATTCCTATTTTCCCGCACTAAAGTCAACC
TAGGCTCCGCTGTATGCAACGTACGTGAGAACCCTTGGTCTATCATGCTT
GGCTGA
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