mRNA_Ecto-sp8_S_contig9882.31713.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9882.31713.1
Unique NamemRNA_Ecto-sp8_S_contig9882.31713.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Match: D7G7P0_ECTSI (Glycine/D-amino acid oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P0_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 1.860e-99
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTSTWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIGARCSRCWRC 438
            SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDK+SLGLVNAYQPSLTSTWMFQKSMSVGVGERV+ANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIGA CSRCWRC
Sbjct:    5 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIGAGCSRCWRC 150          
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Match: A0A6H5L433_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L433_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 5.580e-83
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTSTWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 411
            SGMQSPLSFGGFACLTRH+KRISEALSEALEGDLLDK+SLGLVNAYQPSLTSTWMFQKSMSVGVGERV ANLIVDLLANNF+SMDKLGNPVLKPFLQDVVQFGPLARVL GVTLDAPLSIPPLLLHVGIVPLADWIG
Sbjct:  471 SGMQSPLSFGGFACLTRHMKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVGANLIVDLLANNFRSMDKLGNPVLKPFLQDVVQFGPLARVLVGVTLDAPLSIPPLLLHVGIVPLADWIG 607          
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Match: A0A150GR87_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GR87_GONPE)

HSP 1 Score: 170 bits (431), Expect = 7.960e-48
Identity = 79/137 (57.66%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTSTWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 411
            SG+QSPLSFGGF  LTRH+ R+++AL+EALE D +D+ SLGLV+AY P L+S+WM QK+MSV +G+  +  LI  +LA NFK+M++LG PV+KPFLQDV+QFGP+ + +    L  PLSIP L+ HVG  PL +W+G
Sbjct:  324 SGLQSPLSFGGFGALTRHLARLTDALTEALEADCVDRGSLGLVHAYNPGLSSSWMMQKAMSVRLGDTPSPQLINRMLAGNFKAMERLGEPVMKPFLQDVIQFGPMVQTMGAQMLTDPLSIPGLIAHVGPGPLLEWLG 460          
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Match: A0A8J4AY36_9CHLO (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4AY36_9CHLO)

HSP 1 Score: 170 bits (430), Expect = 5.720e-47
Identity = 80/137 (58.39%), Postives = 107/137 (78.10%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTSTWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 411
            SG+QSPLSFGGF  LTRH+ R++ AL+EA+E D LD+ESL LV+AY P L+S+WM QK+MSV  GE+   +LI  +LA NFK+M++LG+PV+KPFLQDV++FGP+ R +    L  PLSIP L+ HVG +PL +W+G
Sbjct:  440 SGLQSPLSFGGFGALTRHLARLTTALAEAVETDALDRESLALVHAYNPGLSSSWMMQKAMSVRKGEQPPPDLINRMLAGNFKAMERLGDPVMKPFLQDVIKFGPMMRTMTAQMLTDPLSIPGLISHVGPMPLLEWLG 576          
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Match: D8THU2_VOLCA (Uncharacterized protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8THU2_VOLCA)

HSP 1 Score: 165 bits (418), Expect = 3.240e-46
Identity = 79/137 (57.66%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTSTWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 411
            SG+QSPLSFGGF  LTRH+ R++ AL+EA+E D LD+ SL LV +Y P L+S+WM QK+MSV  GE+   +LI  +LA NFK+M++LG+PV+KPFLQDVVQFGP+ R +A   L  P SIP L+ HVG  PL +W+ 
Sbjct:  285 SGLQSPLSFGGFGALTRHLARLTAALTEAVEADALDRGSLSLVQSYNPGLSSSWMMQKAMSVRRGEQPPPDLINRMLAGNFKAMERLGDPVMKPFLQDVVQFGPMMRTMAAQILTDPASIPSLIRHVGPAPLLEWLS 421          
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Match: A0A836C4K2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C4K2_9CHLO)

HSP 1 Score: 165 bits (417), Expect = 5.460e-45
Identity = 80/141 (56.74%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTSTWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIGARCS 423
            SG+QSPLSFGGF  LTRH+ R+++ALSEALE DLLDK SLG V AY P L+S+WM Q++MSV  G+    +LI  +LA NF+SM + G+PV+KPFLQDV+QFGP+   L       P SIP L+ HVG  PL +W+G   S
Sbjct:  468 SGLQSPLSFGGFGALTRHLARLNKALSEALEADLLDKASLGRVAAYNPGLSSSWMMQRAMSVRQGDAPTPDLINRMLAGNFRSMQRFGDPVMKPFLQDVIQFGPMMTTLTAQMFGDPASIPRLISHVGPGPLLEWVGHMAS 608          
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Match: A0A7S4DCS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCS5_HETAK)

HSP 1 Score: 164 bits (414), Expect = 6.430e-45
Identity = 77/144 (53.47%), Postives = 101/144 (70.14%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTSTWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIGARCSRCW 432
            SG+QSPLSFGGF CLTRH+ R++ AL++ +  D L +E L LVNAYQP+L+  WMFQK+MSV VG+R    ++V  L NNF +M+  G+PVL+PFLQDVVQF  L + L    +  PL++PPLL HVG+  L DW+G      W
Sbjct:  364 SGIQSPLSFGGFVCLTRHIGRLTGALADCVRLDRLSREDLALVNAYQPNLSGAWMFQKAMSVAVGQRAAPGIVVRTLQNNFGAMNSFGDPVLRPFLQDVVQFDLLLKTLVQAFILDPLAVPPLLFHVGLPALIDWMGHFAQLWW 507          
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Match: A0A7S3PA49_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PA49_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.140e-44
Identity = 75/137 (54.74%), Postives = 100/137 (72.99%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTSTWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 411
            SG+QSPLSFGGF  LTRH++RIS A+ +AL  DLL KE LG +NAY P+L++TWMFQ+SMSV +G+ V++  +  LLA NF+ MD+ G   +KPFLQDVV+F  L   LAG  +  P  +P ++ HVG+  LADW+G
Sbjct:   50 SGIQSPLSFGGFGALTRHLERISGAVHDALADDLLHKEDLGKINAYTPNLSATWMFQRSMSVRMGQSVDSKFVNRLLATNFEQMDQAGLRTIKPFLQDVVRFDGLVSSLAGSFVADPTFMPQIIAHVGVPALADWLG 186          
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Match: A8HX01_CHLRE (Glycine/D-amino acid oxidase-like protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HX01_CHLRE)

HSP 1 Score: 161 bits (407), Expect = 3.210e-44
Identity = 75/137 (54.74%), Postives = 100/137 (72.99%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTSTWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 411
            SG+QSPLSFGGF  LTRH+ R++ AL+EA E D LD+ SLGL++AY P L+S+WM QK+MSV  G++    LI  +LA NF++M+KLG   +KPFLQDV+QF P+   +    L  PLS+P L+ HVG  PLA+W+G
Sbjct:  337 SGLQSPLSFGGFGALTRHLARLTNALTEAAEADALDRNSLGLIHAYNPGLSSSWMMQKAMSVREGDKPPPELINRMLAGNFRAMEKLGEATMKPFLQDVIQFQPMLATMGAQILTDPLSVPSLMAHVGPGPLAEWLG 473          
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Match: A0A8J9RAY4_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RAY4_9CHLO)

HSP 1 Score: 161 bits (408), Expect = 6.830e-44
Identity = 75/136 (55.15%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTSTWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWI 408
            SG+QSPLSFGGF  LTRH+ R+  A++EAL+ + LDK+SL  VNAY P L+  WM Q++MSV  GER + N I  LLA NF +M + G+PVLKPFLQDVVQ+GPL   L    L  PL +P +  HVG++P+ DW+
Sbjct:  430 SGIQSPLSFGGFGALTRHLGRLRSAITEALDAEALDKDSLAQVNAYNPGLSGAWMLQRAMSVRPGERPDPNFINSLLAKNFAAMQRFGDPVLKPFLQDVVQYGPLGLTLVSQMLSDPLFVPAIFRHVGVLPMLDWL 565          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9882.31713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7P0_ECTSI1.860e-9997.95Glycine/D-amino acid oxidase-like protein n=1 Tax=... [more]
A0A6H5L433_9PHAE5.580e-8396.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A150GR87_GONPE7.960e-4857.66Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J4AY36_9CHLO5.720e-4758.39Uncharacterized protein n=3 Tax=Volvox TaxID=3066 ... [more]
D8THU2_VOLCA3.240e-4657.66Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
A0A836C4K2_9CHLO5.460e-4556.74Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S4DCS5_HETAK6.430e-4553.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3PA49_9STRA2.140e-4454.74Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A8HX01_CHLRE3.210e-4454.74Glycine/D-amino acid oxidase-like protein (Fragmen... [more]
A0A8J9RAY4_9CHLO6.830e-4455.15Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9882contigEcto-sp8_S_contig9882:4295..5626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score160.2
Seed ortholog evalue7.2e-37
Seed eggNOG ortholog3067.XP_002946130.1
Model size444
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs28PI8@1,2QW6A@2759,34K15@3041,37M1W@33090
Ec32 ortholog descriptionglycine/D-amino acid oxidase-like protein
Ec32 orthologEc-22_001590.1
Cds size438
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145356.4841027-CDS-Ecto-sp8_S_contig9882:4294..44801681145356.4841027-CDS-Ecto-sp8_S_contig9882:4294..4480Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9882 4295..4480 -
1681145356.5005658-CDS-Ecto-sp8_S_contig9882:4975..51491681145356.5005658-CDS-Ecto-sp8_S_contig9882:4975..5149Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9882 4976..5149 -
1681145356.5118039-CDS-Ecto-sp8_S_contig9882:5542..56201681145356.5118039-CDS-Ecto-sp8_S_contig9882:5542..5620Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9882 5543..5620 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145356.5235162-UTR-Ecto-sp8_S_contig9882:5620..56261681145356.5235162-UTR-Ecto-sp8_S_contig9882:5620..5626Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9882 5621..5626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9882.31713.1prot_Ecto-sp8_S_contig9882.31713.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9882 4295..5620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9882.31713.1

>prot_Ecto-sp8_S_contig9882.31713.1 ID=prot_Ecto-sp8_S_contig9882.31713.1|Name=mRNA_Ecto-sp8_S_contig9882.31713.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=146bp
MQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKESLGLVNAYQPSLTS
TWMFQKSMSVGVGERVNANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQF
GPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIGARCSRCWRCA*
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mRNA from alignment at Ecto-sp8_S_contig9882:4295..5626-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9882.31713.1 ID=mRNA_Ecto-sp8_S_contig9882.31713.1|Name=mRNA_Ecto-sp8_S_contig9882.31713.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1332bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9882:4295..5626- (Ectocarpus species8 EcLAC_412)
AGTGGCATGCAGAGCCCTCTCTCTTTCGGGGGCTTCGCTTGCCTCACAAG GCATGTGAAGCGAATTTCGGAGGCCCTGTCCGAGGTGAGCCTGCATCGTT TGTTGGCTCGCTGTACGGATTTTCGTTTGTTTTTTTTCGTTTCAGTTCTT TTATTTTCTTCTTTTCTGTGCGTTCGCTCTACCTTGCTTTGCTCTGCCGT ACTTTTGACGTTCCTTGCTTTGCTGTGCTCAGTTGGTCTTGACCTTGCCT GGGATTTGTTTCGATATTGCTGTGCCCGAACTTTCTGTTTTTCTTCGTCG TTCTCTCTATTGTAATCAATCCTCTCTACAATAGTTCGCTGCCCTCTGTG CCGGTTCATTGTTCGTGTGCTCGGCGGTTTACTAGCCAAGCACGACTACG GCCTCGTAAACCACGAACTCCACCATGTGACCACGCTGGCCAACGTCGAC CACAAGTGTCCCCCTTTCCCCTGTCAGGCGCTAGAGGGAGACCTACTGGA CAAGGAGTCGCTCGGCCTGGTGAACGCCTACCAGCCCTCGCTGACCTCGA CGTGGATGTTCCAGAAGTCGATGAGCGTCGGGGTCGGAGAGAGGGTGAAC GCCAACCTCATCGTGGACCTCCTCGCGAACAACTTCAAGTCCATGGACAA GGTGAGGTTTGCTTCGTGTTGTGTGGTACTGCTCCACGCTGCACCGCCTC ACAGGCCTTTGGGGGAGATGTCGAACAAGGTGCCATGTAGACACGGCATC CTTCACGTGTGGTGGTGGCGGTGGCGGGCATTTCGGAACAATTCAAGGGG TCTGCAGACGAGATTTGGCGAGTTTGCTCGGCACTGGTAGGTACACTCCT GTACGTATGTGTCACAAGGAATATGTTGCCGTGTTTGTTTGAGAAAATTG TATTTGGGCGACATTGACGCCATTCCCGCTTGTCGTGCTCTCGGATGTGC TGCTCCTTTGGTGGATACGGTTGATGTGCAATGTTCTTTTCCCACCAAAG TCGCGGTGAAGGAGGATCATGAGCACCCCAATCGCTTTTCCCTTCGATTG AGAGCCGCTCCCGCAGCGCATGAGATGACGCGTCGCGCCATCCACCGACA TACCTCCGCCGCACCCTCTCCCGCCGTCGTTCTGTGAACAATATAGCTGG GAAACCCGGTGCTGAAGCCCTTCTTGCAAGACGTGGTGCAGTTCGGACCT CTGGCGAGAGTGCTGGCCGGCGTTACCCTGGACGCCCCGTTGTCGATCCC GCCGCTGCTCCTGCACGTCGGGATCGTTCCCCTCGCGGACTGGATAGGTG CGCGGTGTAGTAGGTGCTGGCGCTGCGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9882:4295..5626-

>mRNA_Ecto-sp8_S_contig9882.31713.1 ID=mRNA_Ecto-sp8_S_contig9882.31713.1|Name=mRNA_Ecto-sp8_S_contig9882.31713.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9882:4295..5626- (Ectocarpus species8 EcLAC_412)
ATGCAGAGCCCTCTCTCTTTCGGGGGCTTCGCTTGCCTCACAAGGCATGT
GAAGCGAATTTCGGAGGCCCTGTCCGAGGCGCTAGAGGGAGACCTACTGG
ACAAGGAGTCGCTCGGCCTGGTGAACGCCTACCAGCCCTCGCTGACCTCG
ACGTGGATGTTCCAGAAGTCGATGAGCGTCGGGGTCGGAGAGAGGGTGAA
CGCCAACCTCATCGTGGACCTCCTCGCGAACAACTTCAAGTCCATGGACA
AGCTGGGAAACCCGGTGCTGAAGCCCTTCTTGCAAGACGTGGTGCAGTTC
GGACCTCTGGCGAGAGTGCTGGCCGGCGTTACCCTGGACGCCCCGTTGTC
GATCCCGCCGCTGCTCCTGCACGTCGGGATCGTTCCCCTCGCGGACTGGA
TAGGTGCGCGGTGTAGTAGGTGCTGGCGCTGCGCGTAG
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