mRNA_Ecto-sp8_S_contig9880.31712.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9880.31712.1
Unique NamemRNA_Ecto-sp8_S_contig9880.31712.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.760e-23
Identity = 66/133 (49.62%), Postives = 74/133 (55.64%), Query Frame = -2 
Query:   90 FECDCGSECED---------LFM*SRNIGCTRRRGKCT*LS*E-----KKKESTGDV*GME*PG*DVSCTGAWEGVEKAVSDIDRIYRQRSIFLSHLWRSKKERLAIGDRSCGNNAPSSRGRVVNGLTAKACK 446
            F+CDCG ECED         L+   R +  T   GK      E      ++E T            V+  G    VEKA  DI RI R    FLSHLW+S+KERLAIGDRSCGNNAPSSRGRVVNGLTAK CK
Sbjct:  143 FKCDCGFECEDRVHVVAECPLYKKEREVYVTEL-GKIDGTYREMFEAWNREERT------------VAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCK 262
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BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Match: A0A6H5JJA8_9PHAE (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.790e-23
Identity = 60/117 (51.28%), Postives = 72/117 (61.54%), Query Frame = -2 
Query:   99 FECDCGSECEDLFM*SRNIGCTRRRGKCT*LS*EKKKESTGDV*-GME*PG*DVSCTGAWEGVEKAVSDIDRIYRQRSIFLSHLWRSKKERLAIGDRSCGNNAPSSRGRVVNGLTAK 446
            F+CDCG ECED  +        ++  +       K   + G++       G  V+  G    VEKA SDI RIYR    FLS+LW+S+KERLAIGDRSCGNNAPSSRGRVVNGLTAK
Sbjct:  323 FKCDCGFECEDRVLVVAECPWYKKEREVYVTELGKIDGTYGEMFEAWNREGRTVAVVGHRRWVEKAGSDIVRIYRLGETFLSYLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAK 439
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BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Match: A0A6H5K4W7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W7_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.670e-23
Identity = 70/141 (49.65%), Postives = 79/141 (56.03%), Query Frame = -2 
Query:   72 FECDCGSECED---------LFM*SRNIGCTRRRGKCT*LS*E-----KKKESTGDV*GME*PG*DVSCTGAWEGVEKAVSDIDRIYRQRSIFLSHLWRSKKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKHKS--TPP 446
            F+CDCG ECED         L+   R +  T   GK      E      ++E T            V+  G    VEKA  DI RI R    FLSHLW+S KERLAIGDRSCGNNAPSSRGRVV+GLTAKACK K+  TPP
Sbjct:  845 FKCDCGFECEDRVHVVAECPLYKKEREVYVTEL-GKIDGTYREMFEAWNREERT------------VAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSSKERLAIGDRSCGNNAPSSRGRVVDGLTAKACKRKNIRTPP 972
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BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.520e-23
Identity = 68/139 (48.92%), Postives = 77/139 (55.40%), Query Frame = -2 
Query:   72 FECDCGSECED---------LFM*SRNIGCTRRRGKCT*LS*E-----KKKESTGDV*GME*PG*DVSCTGAWEGVEKAVSDIDRIYRQRSIFLSHLWRSKKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKHKSTPP 446
            F+CDCG ECED         L+   R +  T   GK      E      ++E T            V+  G    VEKA  DI RI R    FLSHLW+S+KERLAIGDRSCGNNAPSSRGRVVNGLTAKACK +   P
Sbjct:  327 FKCDCGFECEDRVHVVAECPLYKKEREVYVTEL-GKIDGTYREMFEAWNREERT------------VAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTQRVRP 452
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BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.580e-23
Identity = 67/133 (50.38%), Postives = 75/133 (56.39%), Query Frame = -2 
Query:   90 FECDCGSECED---------LFM*SRNIGCTRRRGKCT*LS*E-----KKKESTGDV*GME*PG*DVSCTGAWEGVEKAVSDIDRIYRQRSIFLSHLWRSKKERLAIGDRSCGNNAPSSRGRVVNGLTAKACK 446
            F+CDCG ECED         L+   R +  T   GK      E      ++E T            V+  G    VEKA  DI RI R    FLSHLW+S+KERLAIGDRSCGNNAPSSRGRVVNGLTAKACK
Sbjct:  378 FKCDCGFECEDRVHVVAECPLYKKEREVYVTEL-GKIDGTYREMFEAWNREERT------------VAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACK 497
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.120e-22
Identity = 67/133 (50.38%), Postives = 75/133 (56.39%), Query Frame = -2 
Query:   90 FECDCGSECED---------LFM*SRNIGCTRRRGKCT*LS*E-----KKKESTGDV*GME*PG*DVSCTGAWEGVEKAVSDIDRIYRQRSIFLSHLWRSKKERLAIGDRSCGNNAPSSRGRVVNGLTAKACK 446
            F+CDCG ECED         L+   R +  T   GK      E      ++E T            V+  G    VEKA  DI RI R    FLSHLW+S+KERLAIGDRSCGNNAPSSRGRVVNGLTAKACK
Sbjct:  400 FKCDCGFECEDRVHVVAECPLYKKEREVYVTEL-GKIDGTYREMFEAWNREERT------------VAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACK 519
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.820e-22
Identity = 59/120 (49.17%), Postives = 69/120 (57.50%), Query Frame = -2 
Query:   90 FECDCGSECEDLFM*SRNIGCTRRRGKCT*LS*EKKKESTGDV*-GME*PG*DVSCTGAWEGVEKAVSDIDRIYRQRSIFLSHLWRSKKERLAIGDRSCGNNAPSSRGRVVNGLTAKACK 446
            F+CDCG ECED           ++  +      EK   +  ++          V+  G    VEKA   I RI R    FLSHLW+S+KERLA GDRSCGNNAPSSRGRVVNGLTAKACK
Sbjct:   50 FKCDCGFECEDRVHVVAERPWYKKEREVYVTELEKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRGIVRIDRLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLTAKACK 169
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Match: A0A6H5KUW5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW5_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.780e-22
Identity = 66/133 (49.62%), Postives = 75/133 (56.39%), Query Frame = -2 
Query:   90 FECDCGSECED---------LFM*SRNIGCTRRRGKCT*LS*E-----KKKESTGDV*GME*PG*DVSCTGAWEGVEKAVSDIDRIYRQRSIFLSHLWRSKKERLAIGDRSCGNNAPSSRGRVVNGLTAKACK 446
            F+CDCG ECED         L+   R +  T   GK      E      ++E T            V+  G    VEKA  DI RI R    FLSHLW+S+KERLAIGDRSCGNNAPSSRGRVVNGL+AKACK
Sbjct:  544 FKCDCGFECEDRVHVVAECPLYKKEREVYVTEL-GKIDGTYREMFEAWNREERT------------VAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLSAKACK 663
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Match: A0A6H5KSI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI5_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.940e-22
Identity = 64/129 (49.61%), Postives = 73/129 (56.59%), Query Frame = -2 
Query:   90 FECDCGSECEDLFM*SRNIGCTRRRGKCT*LS*EKKKEST--GDV*GME*PG*D--------VSCTGAWEGVEKAVSDIDRIYRQRSIFLSHLWRSKKERLAIGDRSCGNNAPSSRGRVVNGLTAKACK 446
            F+CDCG ECED         C R   +C     E++   T  G + G      +        V+  G    VEKA  DI R  R    FLSHLW+ +KERLAIGDRSCGNNAPSSRGRVVNGLTAKACK
Sbjct:  675 FKCDCGFECED---------CVRIVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIGRTDRLGKTFLSHLWQYRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACK 794
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.250e-22
Identity = 66/133 (49.62%), Postives = 74/133 (55.64%), Query Frame = -2 
Query:   90 FECDCGSECED---------LFM*SRNIGCTRRRGKCT*LS*E-----KKKESTGDV*GME*PG*DVSCTGAWEGVEKAVSDIDRIYRQRSIFLSHLWRSKKERLAIGDRSCGNNAPSSRGRVVNGLTAKACK 446
            F+CDCG ECED         L+   R +  T   GK      E      ++E T            V+  G    VEKA  DI RI R    FLSHLW+S+KERLAIGDRSCGNNAPSSRGRVVNGLTAK CK
Sbjct: 1463 FKCDCGFECEDRVHVVAECPLYKKEREVYVTEL-GKIDGTYREMFEAWNREERT------------VAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCK 1582
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9880.31712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCQ0_9PHAE1.760e-2349.62Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJA8_9PHAE3.790e-2351.28tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A6H5K4W7_9PHAE4.670e-2349.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LRL5_9PHAE5.520e-2348.92Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KVX2_9PHAE7.580e-2350.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD24_9PHAE1.120e-2250.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJX4_9PHAE1.820e-2249.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUW5_9PHAE3.780e-2249.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSI5_9PHAE3.940e-2249.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5C9_9PHAE4.250e-2249.62Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9880contigEcto-sp8_S_contig9880:5612..6144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size517
Hectar predicted targeting categorychloroplast
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_004400.2
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145356.4259999-CDS-Ecto-sp8_S_contig9880:5611..56531681145356.4259999-CDS-Ecto-sp8_S_contig9880:5611..5653Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9880 5612..5653 -
1681145356.4402652-CDS-Ecto-sp8_S_contig9880:5670..59761681145356.4402652-CDS-Ecto-sp8_S_contig9880:5670..5976Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9880 5671..5976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145356.452856-UTR-Ecto-sp8_S_contig9880:5976..61441681145356.452856-UTR-Ecto-sp8_S_contig9880:5976..6144Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9880 5977..6144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9880.31712.1prot_Ecto-sp8_S_contig9880.31712.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9880 5612..5976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9880.31712.1

>prot_Ecto-sp8_S_contig9880.31712.1 ID=prot_Ecto-sp8_S_contig9880.31712.1|Name=mRNA_Ecto-sp8_S_contig9880.31712.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp
MANRSFLLRQRWLKNILRCLYILSISLTAFSTPSHAPVQLTSYPGYSMPQ
TSPVLSFFFSQLSHVHFPLLLVQPIFRDYMNRSSHSEPQSHSKHGRGGGY
FPPNTLAFNKIKKARK
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mRNA from alignment at Ecto-sp8_S_contig9880:5612..6144-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9880.31712.1 ID=mRNA_Ecto-sp8_S_contig9880.31712.1|Name=mRNA_Ecto-sp8_S_contig9880.31712.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=533bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9880:5612..6144- (Ectocarpus species8 EcLAC_412)
GCTGTTTTGAGGCTGGCGACCCGTGGCTGTTGTGGGGAGCGTCCATTACT
CTAAAACCCCAAATTACGGGAGGGGGGCGTACTCTTATGTTTGCATGCCT
TAGCGGTTAGACCATTGACCACACGTCCTCGAGAGGACGGAGCATTGTTC
CCACAGGACCGATCACCAATGGCCAATCGTTCCTTCTTACTTCGCCAAAG
GTGGCTCAAAAATATACTCCGTTGTCTATATATCCTATCGATATCACTTA
CCGCCTTTTCAACCCCTTCCCATGCCCCAGTACAGCTAACGTCTTATCCT
GGCTATTCCATGCCTCAAACATCCCCTGTACTTTCCTTCTTCTTTTCTCA
GCTCAGTCATGTACATTTCCCTCTCCTTCTTGTACAGCCGATATTCCGCG
ACTACATGAACAGGTCTTCGCACTCGGAGCCACAGTCACACTCAAAACAC
GGGAGGGGGGGGGGGTATTTTCCAGCCCGGTTGTGTGTAAGCCAAATACT
CTCGCATTCAACAAAATAAAGAAAGCACGGAAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9880:5612..6144-

>mRNA_Ecto-sp8_S_contig9880.31712.1 ID=mRNA_Ecto-sp8_S_contig9880.31712.1|Name=mRNA_Ecto-sp8_S_contig9880.31712.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9880:5612..6144- (Ectocarpus species8 EcLAC_412)
ATGGCCAATCGTTCCTTCTTACTTCGCCAAAGGTGGCTCAAAAATATACT
CCGTTGTCTATATATCCTATCGATATCACTTACCGCCTTTTCAACCCCTT
CCCATGCCCCAGTACAGCTAACGTCTTATCCTGGCTATTCCATGCCTCAA
ACATCCCCTGTACTTTCCTTCTTCTTTTCTCAGCTCAGTCATGTACATTT
CCCTCTCCTTCTTGTACAGCCGATATTCCGCGACTACATGAACAGGTCTT
CGCACTCGGAGCCACAGTCACACTCAAAACACGGGAGGGGGGGGGGGTAT
TTTCCACCAAATACTCTCGCATTCAACAAAATAAAGAAAGCACGGAAA
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