mRNA_Ecto-sp8_S_contig98773.31706.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98773.31706.1
Unique NamemRNA_Ecto-sp8_S_contig98773.31706.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98773.31706.1 vs. uniprot
Match: D8LCV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV5_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.630e-47
Identity = 94/116 (81.03%), Postives = 95/116 (81.90%), Query Frame = -2 
Query:    2 QCGVGQESIKRTARGEGAAGXXXXXXXXETDDVGGHENDIQMSVRPHVESQECKTETSSRHSSRDNSNSSSGRSPPEQRRGDVDGNKRGTGSGGVDPGASRGWAGTVLHERQPWTA 349
            QCG GQESI+RTAR E    XXX     ETDDVGGHENDIQMSVRPHVESQECKTETSSRHSSRDN       SPPEQRRGDVDGNKRGTGSGGVDPGA R WAGTV HERQPWTA
Sbjct:  522 QCGGGQESIERTAREEXXXXXXXREGRRETDDVGGHENDIQMSVRPHVESQECKTETSSRHSSRDNXXXXXXXSPPEQRRGDVDGNKRGTGSGGVDPGAPRAWAGTVFHERQPWTA 637
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BLAST of mRNA_Ecto-sp8_S_contig98773.31706.1 vs. uniprot
Match: A0A6H5KPW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPW3_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.680e-40
Identity = 86/119 (72.27%), Postives = 88/119 (73.95%), Query Frame = -2 
Query:    2 QCGVGQESIKRTARGEGAAGXXXXXXXXETDDVGGHENDIQMSVRPHVESQECKTETSSRHSSRDNSNSS---SGRSPPEQRRGDVDGNKRGTGSGGVDPGASRGWAGTVLHERQPWTA 349
            QCGV QESI RTARG+GAAG        ETD VGG+EN IQMSVRPH ESQECKTETSSRH            SG  PPEQRRGDVDGNK GTGS GVD GASRGW GTVLHERQPWTA
Sbjct:  787 QCGVVQESIDRTARGKGAAGGVGREGRRETDGVGGNENAIQMSVRPHAESQECKTETSSRHXXXXXXXXXXXXSGSRPPEQRRGDVDGNKHGTGSDGVDSGASRGWVGTVLHERQPWTA 905
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98773.31706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCV5_ECTSI2.630e-4781.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPW3_9PHAE1.680e-4072.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98773contigEcto-sp8_S_contig98773:4..353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size352
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145355.8139753-CDS-Ecto-sp8_S_contig98773:3..3271681145355.8139753-CDS-Ecto-sp8_S_contig98773:3..327Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98773 4..327 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145355.826904-UTR-Ecto-sp8_S_contig98773:327..3531681145355.826904-UTR-Ecto-sp8_S_contig98773:327..353Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig98773 328..353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98773.31706.1prot_Ecto-sp8_S_contig98773.31706.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98773 4..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98773.31706.1

>prot_Ecto-sp8_S_contig98773.31706.1 ID=prot_Ecto-sp8_S_contig98773.31706.1|Name=mRNA_Ecto-sp8_S_contig98773.31706.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=108bp
SPSTAAARGAPCPPTPSTRRGRRRRCRFRACCRRRRHVVAQVGCGRCCCC
CCRGCCGGCWFPFYILVIRHEAGQTSGCRFHGPRRRRSLFSSHGPRHLPP
LPLSLSS*
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mRNA from alignment at Ecto-sp8_S_contig98773:4..353+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98773.31706.1 ID=mRNA_Ecto-sp8_S_contig98773.31706.1|Name=mRNA_Ecto-sp8_S_contig98773.31706.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=350bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98773:4..353+ (Ectocarpus species8 EcLAC_412)
TCGCCGTCCACGGCTGCCGCTCGTGGAGCACCGTGCCCGCCCACCCCCTC
GACGCGCCGGGGTCGACGCCGCCGCTGCCGGTTCCGCGCTTGTTGCCGTC
GACGTCGCCACGTCGTTGCTCAGGTGGGCTGCGGCCGCTGCTGCTGTTGC
TGTTGTCGCGGCTGCTGTGGCGGCTGCTGGTTTCCGTTTTACATTCTTGT
GATTCGACATGAGGCCGGACAGACATCTGGATGTCGTTTTCATGGCCCCC
GACGTCGTCGGTCTCTCTTCTCCTCTCACGGCCCCCGCCACCTGCCGCCC
CTTCCCCTCTCGCTGTCCTCTTAATCGATTCCTGACCAACACCGCACTGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98773:4..353+

>mRNA_Ecto-sp8_S_contig98773.31706.1 ID=mRNA_Ecto-sp8_S_contig98773.31706.1|Name=mRNA_Ecto-sp8_S_contig98773.31706.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98773:4..353+ (Ectocarpus species8 EcLAC_412)
TCGCCGTCCACGGCTGCCGCTCGTGGAGCACCGTGCCCGCCCACCCCCTC
GACGCGCCGGGGTCGACGCCGCCGCTGCCGGTTCCGCGCTTGTTGCCGTC
GACGTCGCCACGTCGTTGCTCAGGTGGGCTGCGGCCGCTGCTGCTGTTGC
TGTTGTCGCGGCTGCTGTGGCGGCTGCTGGTTTCCGTTTTACATTCTTGT
GATTCGACATGAGGCCGGACAGACATCTGGATGTCGTTTTCATGGCCCCC
GACGTCGTCGGTCTCTCTTCTCCTCTCACGGCCCCCGCCACCTGCCGCCC
CTTCCCCTCTCGCTGTCCTCTTAA
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