mRNA_Ecto-sp8_S_contig987.31697.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig987.31697.1
Unique NamemRNA_Ecto-sp8_S_contig987.31697.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig987.31697.1 vs. uniprot
Match: A0A6H5K3N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3N5_9PHAE)

HSP 1 Score: 717 bits (1852), Expect = 1.540e-247
Identity = 571/746 (76.54%), Postives = 578/746 (77.48%), Query Frame = 1
Query:  271 MATKCSDESVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQAGANAGHRNKDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTREKAQATELISWLLSSAKADAKATDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSGGGVTTPAAAVATAPAPGGATXXXXXXXXXXXXXETEVKAVVASVPAAAAAXXEAPXXXXXXXXXXXPQEAAGPMRLLPKASAFPTSRPATTVASARAAAKKMTSPTSPRSPAGSPRSVXXXXXXXXXXXXXXXXXXVASRPAEKAAAGASSLSSDAAKPDVAVAAATVAVAGPSSPSPSTERPVVPSLSPTATPSPGAAAVXXXXXXXXXXXXXXXXXXXXXX-----GASKPQSPRAGGVLPRTGGTLPAPAAAPTPAXXXXGSSCSSAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSAATPAASNGNGASTVGAXXXXXXXXXXXXXXXPSRFQRTVPSSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAFENKARGGTTTAAKPTPVAKXXXXXXXXXXXXXXXXXXXXXAPVLTQGGXXXXXXXXQQPQSPKKQTQVRPTSPSKVTPESLLGKGTVMHRKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPS 2493
            MATKCSD+SVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQAGANAGHRNKDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTREKAQATELISWLLSSAKADAKATDLGGRMPGNADLSAEAPSLKPTAQAPAI KSLEDARSGGGVTTPAAA   APAPG   XXXXXXXXXXXXX        ASVP A        XXXXXX     PQE AGPMRLLPK SAFPTSRP TTVASARAAAKKM SPTSPRSPAGSPRSVXXXXXXXXXXXXXXXXXX                           A A  A A PSSPS  TE+PVVPS SP A PSPGAAAVXXXXXXXXXXXXXX             GASKPQSPRAGGVL         P++A        GS+ SSAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSG     XXXXXXXXXXXXXXXXXXXXXXXX GN+AAT AASNGNG ST  A                         +AAA            XXXXXXXXXXXXXXXXXX   ENKARGGTT AAKPTPVAKXXXXXX               APVLTQGGXXXXXXXX QPQSPKKQTQVRPTSPSKVTPESLLGKGTVMHRKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPS
Sbjct:    1 MATKCSDDSVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQAGANAGHRNKDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTREKAQATELISWLLSSAKADAKATDLGGRMPGNADLSAEAPSLKPTAQAPAIAKSLEDARSGGGVTTPAAA---APAPGXXXXXXXXXXXXXXXXXXXXXXXXASVPVA--------XXXXXXDGARAPQEVAGPMRLLPKPSAFPTSRPTTTVASARAAAKKMASPTSPRSPAGSPRSVXXXXXXXXXXXXXXXXXXXXXXX---------------------XAVAEKAAARPSSPSSPTEQPVVPSSSPKAKPSPGAAAVXXXXXXXXXXXXXXGLPRAAAAAAASSGASKPQSPRAGGVLXXXXXXXXXPSSA-------TGSTSSSAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSGSSSGPXXXXXXXXXXXXXXXXXXXXXXXXTGNNAATLAASNGNGVSTAAAVTASPKP------------------AAAAAPTPAANSATAGXXXXXXXXXXXXXXXXXXXXXENKARGGTTAAAKPTPVAKXXXXXXARS------------APVLTQGGXXXXXXXXXQPQSPKKQTQVRPTSPSKVTPESLLGKGTVMHRKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPS 677          
BLAST of mRNA_Ecto-sp8_S_contig987.31697.1 vs. uniprot
Match: D7FHR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHR2_ECTSI)

HSP 1 Score: 538 bits (1385), Expect = 1.060e-178
Identity = 468/667 (70.16%), Postives = 480/667 (71.96%), Query Frame = 1
Query:  496 NKDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTREKAQATELISWLLSSAKADAKATDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSGGGVTTPAAAVATAPAPGGATXXXXXXXXXXXXXETEVKAVVASVPAAAAAXXEAPXXXXXXXXXXXPQEAAGPMRLLPKASAFPTSRPATTVASARAAAKKMTSPTSPRSPAGSPRSVXXXXXXXXXXXXXXXXXXVASRPAEKAAAGASSLSSDAAKPDVAVAAATVAVAGPSSPSPSTERPVVPSLSPTATPSPGAAAVXXXXXXXXXXXXXXXXXXXXXXGASKPQSPRAGGVLPRTGGTLPAPAAAPTPAXXXXGSSCSSAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSAATPAASNGNGASTVGAXXXXXXXXXXXXXXXPSRFQRTVPSSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAFENKARGGTTTAAKPTPVAKXXXXXXXXXXXXXXXXXXXXXAPVLTQGGXXXXXXXXQ-QPQSPKKQTQVRPTSPSKVTPESLLGKGTVMHRKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPS 2493
            +KDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTREKAQATELISWLLSSAKAD KATDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSGGG                                                XX   XXXXXXXXXXX  EAAGPMRLLP+ASAFPTSRP TTVASARAAAKKM SPTSPRSPAGSP                                                 A +VAV             +  ++SP A  +  A++                       GASKPQSPRAGGVLPRTGGTLPAPAA PT  XXXX     +AAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSAATPA SNGNG ST  AXXXXXXXXXX     PSRFQRTVP+    XXXXXXXXXXXXXXXXXXXX          AAFENKARGGTTTAAKPTPVAKXXXXXXXXXXXXXXXXXXXXXAPV+ QGGXXXXXXXX  QPQSPKKQ Q RPTSPSKVTPESLLGKGTVM RKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPS
Sbjct:   25 HKDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTREKAQATELISWLLSSAKADTKATDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSGGGX---------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAGPMRLLPRASAFPTSRPTTTVASARAAAKKMASPTSPRSPAGSPSG-----------------------------------------------ARSVAV-------------LKSAVSPRAATAASASS-----------------------GASKPQSPRAGGVLPRTGGTLPAPAATPTXXXXXXXXXXXAAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSAATPAVSNGNGVSTA-AXXXXXXXXXXATAAAPSRFQRTVPAXXXXXXXXXXXXXXXXXXXXXXXXSRGPKASALAAAFENKARGGTTTAAKPTPVAKXXXXXXXXXXXXXXXXXXXXXAPVMAQGGXXXXXXXXXXQPQSPKKQAQARPTSPSKVTPESLLGKGTVMQRKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPS 574          
BLAST of mRNA_Ecto-sp8_S_contig987.31697.1 vs. uniprot
Match: D7FHR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHR4_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.750e-39
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1
Query:  271 MATKCSDESVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQAGANAGHRNK 501
            MATKCSDESVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQ GANAGHRNK
Sbjct:    1 MATKCSDESVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQGGANAGHRNK 77          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig987.31697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K3N5_9PHAE1.540e-24776.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHR2_ECTSI1.060e-17870.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHR4_ECTSI1.750e-3998.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig987contigEcto-sp8_S_contig987:905..7905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score63.2
Seed ortholog evalue6.1e-07
Seed eggNOG ortholog65071.PYU1_T008237
Model size2514
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG0509@2759
EC2.3.1.225
Cds size2244
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig987.31697.1prot_Ecto-sp8_S_contig987.31697.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig987 905..7635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145355.067471-CDS-Ecto-sp8_S_contig987:904..9941681145355.067471-CDS-Ecto-sp8_S_contig987:904..994Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig987 905..994 -
1681145355.08021-CDS-Ecto-sp8_S_contig987:1581..16561681145355.08021-CDS-Ecto-sp8_S_contig987:1581..1656Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig987 1582..1656 -
1681145355.0910063-CDS-Ecto-sp8_S_contig987:1881..35701681145355.0910063-CDS-Ecto-sp8_S_contig987:1881..3570Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig987 1882..3570 -
1681145355.104282-CDS-Ecto-sp8_S_contig987:3985..41441681145355.104282-CDS-Ecto-sp8_S_contig987:3985..4144Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig987 3986..4144 -
1681145355.1151924-CDS-Ecto-sp8_S_contig987:6769..68681681145355.1151924-CDS-Ecto-sp8_S_contig987:6769..6868Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig987 6770..6868 -
1681145355.1273594-CDS-Ecto-sp8_S_contig987:7503..76351681145355.1273594-CDS-Ecto-sp8_S_contig987:7503..7635Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig987 7504..7635 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145355.1398294-UTR-Ecto-sp8_S_contig987:7635..79051681145355.1398294-UTR-Ecto-sp8_S_contig987:7635..7905Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig987 7636..7905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig987.31697.1

>prot_Ecto-sp8_S_contig987.31697.1 ID=prot_Ecto-sp8_S_contig987.31697.1|Name=mRNA_Ecto-sp8_S_contig987.31697.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=748bp
MATKCSDESVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALL
WASTGGSLEVVEWLVKQAGANAGHRNKDDRTAFFFACEHCHTPVANFLVG
QAGVEVNAKDKPSGHTALHRACIAGQTREKAQATELISWLLSSAKADAKA
TDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSGGGVTTPAAAVA
TAPAPGGATAAETAAAAPATAPETEVKAVVASVPAAAAAAAEAPAAEAPA
DSAPAPQEAAGPMRLLPKASAFPTSRPATTVASARAAAKKMTSPTSPRSP
AGSPRSVAAAASPPAGNAAPASPSGVASRPAEKAAAGASSLSSDAAKPDV
AVAAATVAVAGPSSPSPSTERPVVPSLSPTATPSPGAAAVPAASPSPKSA
GSPRAAAAAASSGASKPQSPRAGGVLPRTGGTLPAPAAAPTPASSAAGSS
CSSAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSGSGSGPSSNASA
AATTIKPGLVKQSSYLLRTGNSAATPAASNGNGASTVGAAAASPKPAATA
AAAAPSRFQRTVPSSAAAAATPAANSATAGSAAAVIGASRGPKASALAAA
FENKARGGTTTAAKPTPVAKPVAKPVAKPVAKPVAKPVATPAPVLTQGGG
AAAAAATQQPQSPKKQTQVRPTSPSKVTPESLLGKGTVMHRKKVYVAAAQ
KSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPSPPRCER*
back to top

mRNA from alignment at Ecto-sp8_S_contig987:905..7905-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig987.31697.1 ID=mRNA_Ecto-sp8_S_contig987.31697.1|Name=mRNA_Ecto-sp8_S_contig987.31697.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=7001bp|location=Sequence derived from alignment at Ecto-sp8_S_contig987:905..7905- (Ectocarpus species8 EcLAC_412)
AGTAGCGAACCTTTGTTCCCGTGAAGAACGGCCGTCGCTGTCTCCTCTCT GTGCCCTTCTCCGTGCAAGAAGCCACGCTTGGTCAGGAGACCAAGGAGCT CTTCGTTGGGATAAGCTTCTGGGAGAGGGGTGCTTGTTTTCCGCGGCTCG TGTTGGCGTGCTGACTGCAGCAAAGTTTTGTGTGTGTCTCCTGGGAAAAG GGAAAGGCGCGCGGGAAGAGTTGTTGACGAGCAGTCCTCCTCTCTCTTGT GATACTGGGTAGGGAAGAAGATGGCCACGAAGTGCTCCGATGAGTCCGTG TTGGCAGGGCTGTTCCTGGCCGCCTACAGCGGAAACCTGGCGGACGTGAA GTCCACGCTGAAAAATAACGCGCTCTCTGCGGACGTCGCTGACCCAAACA AGGTATGTACGGGATTTGATGATGACGTGCAAACAGCAGCAGCAGATGGG AGGGATCCAACTTTTATTTTCGGCCATGGCACTTGTCTCCTTTTCGAATC TCTCCCCTCCCACACCGCTGCTGTGGCACACCGCCATGCTGTTAACCACG GCAAGAGCAGCAAGTTGGCCTGTTTCCCTAGAGCTCGATAAGGCCTCTAG CTCACGGTCTCTCCTGCGGCGTGGCTTGGTTTTTCGATTTCGAATGATCG CACACTACCTGCTGCTGCTGCTGCTGGTGCGGCAAAAAACAAATGTCTTG ATTTTTGTGAAGTCGTCCTTTCCGCCGGGAACGGTCGGCCATGATCGCTT CTTGCTTGCATGTCTCTCGCCCGATCAGACCGCTTGTTCTTTCTACCCAC CACCATTCCTTCCTCTACAAGGCAGAAGCCATGACTGGGTCGCTGCCTAG GAAAGCTTTCAGCACCCGCCTGTACGGCGTTCTATGCAAATGAACAGCTG CAAATGAAGAACACACACAAAGGCACAGGGGAACAGATAAATTGTAGCGA ACCACCTTTTTTTCGCCGCCCTCCTGTTGACTGTTTGTTGGCGACTGCGT TGGGATGTCGATGCGTCGATGGTTTCCGAGACACCAGGGCTCTACGGCCC TGCTTTGGGCGAGCACCGGCGGAAGTCTGGAAGTGGTGGAATGGCTGGTG AAGCAAGCGGGGGCGAATGCGGGGCATCGAAACAAGGTACGAGGAGATGC GATGGCCGCCGGGAGGGAGCAATTTTGATTTTCAATTTCAAATATCAACG CGGGTGGTGTGCAAAATCAGCTGCTGCTGCTGCTTTCGAAGAATCAATTT TTCGTTCCTGTATCCCCTGACAGTAGGCCAGTTGACAGTTGACGCAATCA AAGAGCGTGCGCCTGGGGCGTGTGTGTATCGGGCAGACGGCTACGTATGC TAAGTAGCTCAGCTTTTCTCTGGTGACATGAACAGATGCGGGGTGGAAAA CGCATGATGTGTGAGCAATCACCACCACCACGCCACGTAAAACAACCGTG CCGCCGCGAACAAAATAAAATATAAGGCGTCTGTCTCCGTTCGTCTTGGC CTTTGTTGGCAGCAAGCGACAGGCGTGGAAATTCTTCTGGTTTTCCCTTC AAGGTTATAATTGTTTGCCACGGGGTCGAATACGAGCACACCACATCATC CGGGGCACCACCCTTGCGCTCTTTTTCGAAAGTGGTTACTGAGCAATTTT TCTTGTAGTCGGGGATCGCACGAACGATGGATGTTTTCTTGTCCATCTGT CGCTGTGTTGTGTGCACTTAAATTGCAAAGTTCCATTTTCCCGGAACGTT TTGAACCGAAACAGACGCGCAACAGCAGTCGTGCGCCCTTCTAGTAGAGA GCACCCTAGAAATTGATGTTCTAAAGGAGACAAACGAAGCGGTTCTCAGT GTAGAAGCGTGCACTCATAAATATGTTGTCGGTGTCGGCTTCCCTCGCAG ACCCACTCAATAAGGAACAGCCCTCGTGAAGAATTGAAGGTTCGTAGTTC GTGTGAAATGTGGTGGTGTTGGTTTTAGGAAGCTTCTCCTTCCTTGATCG CCCTCTCTCGCTCTCTTTTCTTCGCTGACGTTGTTCACAGCAGTTGTATC TATCACTCGTGTTCTGTAACCGTTGATGTACATCAGCCGAGGGGTGAAGT TTCCCGCACCACCACCTCCGAGTCCGACATGCCGGCGGCACTGTATGAGC ACCGACACTTGTCCGAGTAGAAAATGAGTGGGTTCCATTCCCTACAGGTC ACACCGCTGCTGAACGATCTCGCTTCCCCCGATCTATTGCTTGTATAATA GCATCGACTTCTTGGAAGCATACATAAGGTGAGAGAAGGCTCAACACCCT ACTCGATACAGCAGCAGTTACAATATAGGCGGTTTTGTTCTCCCAGTAGA GCAACGTTCGGACCGGTGTCCGCTACTGAACCCTACATCTAGTCGGCGCT GCTGCTGCGGCTTCAAGTTCAAAAAACGAATTTTCACAAGCTTATCCCAC ACGCATGTTTCTTCGAAGTACACACGGTAGATGTGAACATATGAACACAT CCCAACCGTTTAAGTACTGACACGGCAGAGACCAGACCAATGCCTGGGAG GGGTCTCGAAGTTTGGGATGTCGTGGTACATTTTCTACATGGATAGACGA AATCCCACCACTCGAGAAACCCACCTGTTTCGTGGCCGTCTCACCGCTAA GACTAAGATTTCTACGCATTCCCTTTGGCTGCTGTGGTGTCATCTCGAAT GGTAGTTTCTCTGTGACGATATGATACATTCGGAGAGGCAGGTGGTCTGA AAGGGGCTGTCGAACCCAATGCTCAAATTCGACGATTGAGGAGAAGGAAT GGGTGGCGTTTACACTTGCAACGACCCGCACACAATCATTTGAACTCTTT TCGCCTTATCTTTGATGGAGGAGACTTTGTAGCAAGAACGTCAAGCGCTG TTCTGGACGTTATTTCCGCTCGCCCTACCGTACGACATCAAACTCGTGAA AACTGCGCGCCTCCTGTACCCAAGCCGGTTTTTTTAGATGTTGGCTGCCC CGCATGGGCAGCGTGACAGAAGTTCCGAGCTATGCACGCCTCCTCCGAAA AAGATTGTCAAAAGCATGGCAGTTGCGAGCGCCTCCGCCTCTTTCTCGGC GCAGACACCCTCTTGTGCTGTGGATGGCATCGATGGAGCTTTGGAAATCG ATCCTTAGAAATGCCGGTGTGGGGTCTTGCCTGAAAGTGTCGAGTGTCAG CTCCCATGGTGGTCGTGGCAACAGTGCGGCGTGCAGAACCGGTCTCAACC CGGGGGGCGGGGGGGCTGCAAAGGCTGTGCGTCCAATTCGGCCAAGCTTC GGCGGATTTCCGAGCGGTGTTGCCAGAACCGTACCGCTACTGCTGCCGTG CAGCTTTTACATGCCACCTACAACACCGTTCCCCGGCACGGAGTGTGGCG CTTGTTCTCCATGTGACAGACGGTGCCGGTGCCGAAGATGGCTACTCTCA AGTATTCCGTCGCGTCGGTCGTACTTGTATGTCAGATAGTAGTCTGACAG GAACGATGGTGGGGTGGCAAGCCGGGCACTTACTTGTGGAATGGACCCCG GGACCAATTTCCATGCACGACTGCCACGGCCGACTCATGCCAATCTAGAT GTCGCCGCGTGCCACAAGGCCGCGTGTGTTTTACGACTACCCCCGCAGCA TGTCATCCTCGCACCCATGAAATCTGACTCTTCGCTCGTTTTTCTTCTTT TTCTTTCGCCGCTGCCGCCGAACACCTGTGTGTGGGTGTTTTCTTGTGTT GTGATCGCCAGGATGACCGCACGGCCTTCTTCTTCGCTTGCGAGCACTGC CACACGCCCGTGGCGAACTTTCTGGTTGGGCAGGCCGGCGTGGAGGTCAA CGCTAAGGACAAGCCATCGGGCCACACGGCCCTTCACCGCGCGTGCATCG CCGGCCAGACCAGGGAGAAGGTGTGCTAAGAGAGGCAAAGGTCGAGCGTT ATTTTTTTTGCAAGGACATCGGTTGGCCCCGACATACTACCCGGGTTTCC ATACCGGGAGGACATTTGGGCTTCGTCGCGTTTCGTTGGGCTTTGACGAA GTCTCTTTTGCTGTCGGGGAGTGGCTTGGTTGTTTTTCCTCCTCGTCTTG TGCAGGATCCTGACAGAACTGGACCCCCCCGGATCGCGACCTGTACCAGA ATCTTTTCGATTTTCGCGGCTCCACGACTGACGTCTTTTCATTGGCCAAC GTGGTGGGCGCTACAGTAGCGACAAAGACACCGGACAGAAAAATAGCCGG TGAGTATCTCTTATTTTTGGCGTTCCCCTCCCCCTTCCCCGGCAAACGGA TGCGTATTTTTTGTCGATCCTTATCCCACCCACAGGCGCAGGCGACGGAG CTGATCTCGTGGCTGCTTTCGTCGGCCAAGGCGGACGCCAAGGCCACCGA CCTCGGTGGCCGCATGCCGGGAAACGCCGACCTTTCGGCTGAGGCGCCCA GCCTCAAGCCTACGGCCCAAGCCCCCGCCATCACGAAGTCTCTCGAGGAC GCGAGGTCGGGAGGGGGGGTTACGACGCCCGCCGCCGCCGTTGCCACCGC CCCCGCTCCTGGAGGAGCGACCGCGGCCGAGACGGCCGCTGCGGCTCCCG CGACGGCTCCTGAGACGGAGGTCAAGGCGGTTGTTGCTTCGGTGCCTGCC GCTGCTGCTGCTGCTGCGGAGGCTCCTGCTGCTGAGGCTCCTGCTGATAG TGCCCCCGCCCCCCAGGAGGCCGCGGGCCCGATGCGACTGCTCCCCAAGG CGTCCGCGTTCCCGACCTCTCGCCCGGCCACGACGGTGGCTTCCGCCCGG GCGGCGGCCAAAAAGATGACCTCCCCGACCTCGCCACGCTCGCCTGCAGG TTCCCCTAGGTCTGTGGCGGCTGCCGCCAGTCCCCCGGCGGGGAACGCTG CTCCCGCGTCGCCGTCCGGCGTGGCTTCCCGGCCGGCGGAGAAGGCGGCC GCCGGGGCTTCGTCTTTGTCATCCGACGCCGCGAAGCCTGACGTGGCCGT CGCGGCCGCCACCGTCGCCGTCGCCGGGCCGTCGTCCCCGTCTCCTTCGA CGGAGCGGCCGGTCGTGCCGTCCTTGTCGCCAACGGCGACACCCTCGCCG GGGGCGGCAGCGGTGCCCGCGGCGTCGCCTTCGCCGAAGAGCGCGGGCTC GCCCCGCGCCGCCGCCGCCGCGGCTTCGTCCGGGGCGTCGAAGCCGCAGT CGCCGCGTGCTGGAGGCGTTCTTCCCCGGACCGGAGGCACGCTGCCGGCG CCTGCGGCGGCGCCGACGCCGGCTAGCTCCGCCGCCGGGTCGTCTTGTTC TTCTGCTGCCAAGATTGTGGCCACGGGGGTGAAGCCGGGGCTGGTGAAAC AGTCCTCGTACCTTCTCAGGAACGCCTCCGCCTCGAGCAGCAGCAACGGC GGGAGGAGCGGGTCGGGCTCCGGGCCCTCGTCCAACGCCAGCGCCGCGGC CACGACGATCAAGCCCGGCCTCGTGAAGCAGTCCTCGTACCTCCTGCGCA CGGGGAACAGCGCCGCAACCCCCGCCGCAAGCAACGGCAACGGCGCGTCC ACCGTCGGCGCCGCCGCCGCTTCTCCAAAGCCAGCCGCCACCGCCGCCGC CGCCGCTCCGTCGCGCTTCCAGCGCACGGTCCCGTCTTCCGCCGCCGCCG CCGCCACCCCGGCGGCGAACTCGGCCACCGCCGGCAGCGCGGCCGCGGTG ATCGGAGCCTCGAGGGGCCCCAAGGCCTCGGCCCTCGCGGCCGCTTTTGA GAACAAGGCCAGGGGAGGAACGACGACAGCGGCGAAGCCGACCCCGGTGG CGAAGCCGGTGGCGAAGCCGGTGGCAAAGCCGGTGGCGAAGCCGGTGGCA AAGCCGGTAGCAACGCCAGCACCGGTGCTCACGCAGGGGGGAGGAGCGGC AGCGGCGGCGGCGACGCAGCAGCCGCAGTCGCCCAAGAAGCAGACGCAGG TACGACCAACGTCTCCTTCCAAGGTTACCCCGGAGAGCCTTCTGGGGAAG GGCACCGTCATGCACCGGAAAAAGGTGTGTGCTTCTCTGCCCTGCTGCGG GGTGGTGGATATGTTGGTTTCGTTGCGGGGAAATATGATTTTGGTGCATG GATTGGTTTTTTTGTTTGTTTACCTCGTCAACCTGATCTCCCTCTCATCA TGTGTCTGGCTAGCTGGCCAATCACACTTGTCCTTTTCTCGAAGCCACGG AAGAAAACTTACTTCTTTTTTTTTGTTGGATCGGTGGACGGGTTGTCAGG TTTACGTGGCGGCGGCCCAAAAGTCAGGAAACGGATCCCCGGCGCCCCTC ATCGGGAAGACCAAGAAGGAAAAGGTGGGAACTGGTTCCTTCCAAGTTAG TCACAACAAAATACAGCATCCCGCAGAGGCTACTACAACACCCTTACGAG ATAGTTTCTCAAAGAGAGGATGTGTTGGGAGTCGTTAGCAATGAGGATTC ACGGACACCTGCTCAATGCTGGTCTTTCTTGTGAGACTGTTTTTCGTGCT CGCCCTGAGAAACCAGTCATGCCATGTAGCTGGAACGAAAAACGCTCCGT TGCGGGGTAGATTGAGAGAGATCAGTCCAAAAGCAATGAACCGGCATTCC GCGGCAACCGCTCGGTGTACAACTAGATCTCTCCGCAAGGAAAGTAGCAA CACAACTGACGTGTGAACGGGTGGATAGAATAAGGCACGGCGTTTGTTTT GTTGTTGTGTGTGCTGTGTAAACTCCGACGACCTACGGCCGTAGTGCGGG TTCCGGTAGAGCCCGTAAACCAACCGACAGCCGCGAGAGAGAAAGTCGTA GTCGTGGTGTGCTCGCTCGCGCCCGGCCCGTTTCACAAAGTCTCGCCGCA TTTTTTGCAATCGCGCCGCGCTGCGCCGTACCGCACCGAACCGCACCGCA CCGCACCGCAGGACGGGAGCTTCATGGACAAGTTCGTGTCGATGTTCACT ATTTCCCCGCAGTCCTCGCCGTCACCATCCCCGCCGAGGTGTGAGCGATG A
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig987:905..7905-

>mRNA_Ecto-sp8_S_contig987.31697.1 ID=mRNA_Ecto-sp8_S_contig987.31697.1|Name=mRNA_Ecto-sp8_S_contig987.31697.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2244bp|location=Sequence derived from alignment at Ecto-sp8_S_contig987:905..7905- (Ectocarpus species8 EcLAC_412)
ATGGCCACGAAGTGCTCCGATGAGTCCGTGTTGGCAGGGCTGTTCCTGGC
CGCCTACAGCGGAAACCTGGCGGACGTGAAGTCCACGCTGAAAAATAACG
CGCTCTCTGCGGACGTCGCTGACCCAAACAAGGGCTCTACGGCCCTGCTT
TGGGCGAGCACCGGCGGAAGTCTGGAAGTGGTGGAATGGCTGGTGAAGCA
AGCGGGGGCGAATGCGGGGCATCGAAACAAGGATGACCGCACGGCCTTCT
TCTTCGCTTGCGAGCACTGCCACACGCCCGTGGCGAACTTTCTGGTTGGG
CAGGCCGGCGTGGAGGTCAACGCTAAGGACAAGCCATCGGGCCACACGGC
CCTTCACCGCGCGTGCATCGCCGGCCAGACCAGGGAGAAGGCGCAGGCGA
CGGAGCTGATCTCGTGGCTGCTTTCGTCGGCCAAGGCGGACGCCAAGGCC
ACCGACCTCGGTGGCCGCATGCCGGGAAACGCCGACCTTTCGGCTGAGGC
GCCCAGCCTCAAGCCTACGGCCCAAGCCCCCGCCATCACGAAGTCTCTCG
AGGACGCGAGGTCGGGAGGGGGGGTTACGACGCCCGCCGCCGCCGTTGCC
ACCGCCCCCGCTCCTGGAGGAGCGACCGCGGCCGAGACGGCCGCTGCGGC
TCCCGCGACGGCTCCTGAGACGGAGGTCAAGGCGGTTGTTGCTTCGGTGC
CTGCCGCTGCTGCTGCTGCTGCGGAGGCTCCTGCTGCTGAGGCTCCTGCT
GATAGTGCCCCCGCCCCCCAGGAGGCCGCGGGCCCGATGCGACTGCTCCC
CAAGGCGTCCGCGTTCCCGACCTCTCGCCCGGCCACGACGGTGGCTTCCG
CCCGGGCGGCGGCCAAAAAGATGACCTCCCCGACCTCGCCACGCTCGCCT
GCAGGTTCCCCTAGGTCTGTGGCGGCTGCCGCCAGTCCCCCGGCGGGGAA
CGCTGCTCCCGCGTCGCCGTCCGGCGTGGCTTCCCGGCCGGCGGAGAAGG
CGGCCGCCGGGGCTTCGTCTTTGTCATCCGACGCCGCGAAGCCTGACGTG
GCCGTCGCGGCCGCCACCGTCGCCGTCGCCGGGCCGTCGTCCCCGTCTCC
TTCGACGGAGCGGCCGGTCGTGCCGTCCTTGTCGCCAACGGCGACACCCT
CGCCGGGGGCGGCAGCGGTGCCCGCGGCGTCGCCTTCGCCGAAGAGCGCG
GGCTCGCCCCGCGCCGCCGCCGCCGCGGCTTCGTCCGGGGCGTCGAAGCC
GCAGTCGCCGCGTGCTGGAGGCGTTCTTCCCCGGACCGGAGGCACGCTGC
CGGCGCCTGCGGCGGCGCCGACGCCGGCTAGCTCCGCCGCCGGGTCGTCT
TGTTCTTCTGCTGCCAAGATTGTGGCCACGGGGGTGAAGCCGGGGCTGGT
GAAACAGTCCTCGTACCTTCTCAGGAACGCCTCCGCCTCGAGCAGCAGCA
ACGGCGGGAGGAGCGGGTCGGGCTCCGGGCCCTCGTCCAACGCCAGCGCC
GCGGCCACGACGATCAAGCCCGGCCTCGTGAAGCAGTCCTCGTACCTCCT
GCGCACGGGGAACAGCGCCGCAACCCCCGCCGCAAGCAACGGCAACGGCG
CGTCCACCGTCGGCGCCGCCGCCGCTTCTCCAAAGCCAGCCGCCACCGCC
GCCGCCGCCGCTCCGTCGCGCTTCCAGCGCACGGTCCCGTCTTCCGCCGC
CGCCGCCGCCACCCCGGCGGCGAACTCGGCCACCGCCGGCAGCGCGGCCG
CGGTGATCGGAGCCTCGAGGGGCCCCAAGGCCTCGGCCCTCGCGGCCGCT
TTTGAGAACAAGGCCAGGGGAGGAACGACGACAGCGGCGAAGCCGACCCC
GGTGGCGAAGCCGGTGGCGAAGCCGGTGGCAAAGCCGGTGGCGAAGCCGG
TGGCAAAGCCGGTAGCAACGCCAGCACCGGTGCTCACGCAGGGGGGAGGA
GCGGCAGCGGCGGCGGCGACGCAGCAGCCGCAGTCGCCCAAGAAGCAGAC
GCAGGTACGACCAACGTCTCCTTCCAAGGTTACCCCGGAGAGCCTTCTGG
GGAAGGGCACCGTCATGCACCGGAAAAAGGTTTACGTGGCGGCGGCCCAA
AAGTCAGGAAACGGATCCCCGGCGCCCCTCATCGGGAAGACCAAGAAGGA
AAAGGACGGGAGCTTCATGGACAAGTTCGTGTCGATGTTCACTATTTCCC
CGCAGTCCTCGCCGTCACCATCCCCGCCGAGGTGTGAGCGATGA
back to top