mRNA_Ecto-sp8_S_contig98693.31696.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98693.31696.1
Unique NamemRNA_Ecto-sp8_S_contig98693.31696.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Match: V9P370_9MAXI (Myosin light chain alkali 2 n=1 Tax=Pseudodiaptomus annandalei TaxID=298510 RepID=V9P370_9MAXI)

HSP 1 Score: 271 bits (692), Expect = 1.490e-91
Identity = 128/148 (86.49%), Postives = 137/148 (92.57%), Query Frame = 1
Query:    1 MVDAEAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLAELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRLTGKA 444
            MVDAEAVKK+CDIYDWDGKGELD+FFLGD+MYALGMNTTKKVCV LGQTDEEG+KFAKFD+IV KV  AK  P+SSG Y DY+ELLKLYDKN+NGTMM+AELENILANLGDEIPKEDVQKL AELCDPEDEDG FPY PFVDRLTGKA
Sbjct:    1 MVDAEAVKKICDIYDWDGKGELDMFFLGDIMYALGMNTTKKVCVKLGQTDEEGRKFAKFDEIVAKVQEAKNTPESSGNYHDYIELLKLYDKNSNGTMMMAELENILANLGDEIPKEDVQKLMAELCDPEDEDGMFPYTPFVDRLTGKA 148          
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Match: UPI000C761DD0 (myosin light chain alkali-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C761DD0)

HSP 1 Score: 268 bits (684), Expect = 2.470e-90
Identity = 125/148 (84.46%), Postives = 135/148 (91.22%), Query Frame = 1
Query:    1 MVDAEAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLAELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRLTGKA 444
            M DA+A+KK+CDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIV KV  A   P+SSG Y D++ELL+LYDKNNNGTMMLAELEN+L+NLGDEIPK+DVQKL AELCDPEDEDG FPY PFVDRL GKA
Sbjct:    1 MADADAIKKICDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVTKVQTAAKTPESSGNYHDFIELLRLYDKNNNGTMMLAELENLLSNLGDEIPKDDVQKLLAELCDPEDEDGMFPYTPFVDRLCGKA 148          
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Match: C1BV71_LEPSM (Myosin light chain alkali n=5 Tax=Caligidae TaxID=72034 RepID=C1BV71_LEPSM)

HSP 1 Score: 229 bits (585), Expect = 3.040e-75
Identity = 103/148 (69.59%), Postives = 124/148 (83.78%), Query Frame = 1
Query:    1 MVDAEAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLAELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRLTGKA 444
            MVD++ V K+CDIYDWDGKGELD+F+LGD+MYALG+N TKK+ VGLG  DE+ KK+ KFD++V+ +N A   PD+ GTY DYVEL KLYDKN NGTMMLAELEN+++NLGDE+PKED   + AELCD EDEDGFFPY PF+DRL GKA
Sbjct:    1 MVDSDEVLKICDIYDWDGKGELDMFYLGDIMYALGLNITKKIMVGLGWQDEKEKKYCKFDEVVKLINEAHKTPDNCGTYHDYVELCKLYDKNENGTMMLAELENVISNLGDEVPKEDTAAVLAELCDAEDEDGFFPYTPFLDRLCGKA 148          
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Match: A0A553NUN5_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NUN5_TIGCA)

HSP 1 Score: 224 bits (572), Expect = 1.950e-69
Identity = 105/144 (72.92%), Postives = 119/144 (82.64%), Query Frame = 1
Query:    1 MVDAEAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLAELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRL 432
            M DAE +KK+CDIYDWDGKGELD+FFLGDV+YALG N TKK+CVGLGQTDE  KKFAKFDD+V+ V  A    ++ G  ADY+EL KLYDKN NGTMMLAELEN+L+NL DE+PKEDV  +  EL DPEDEDGFFPY PFVDRL
Sbjct:  294 MADAEKIKKICDIYDWDGKGELDMFFLGDVIYALGYNITKKICVGLGQTDERDKKFAKFDDVVKLVGEALNTKENQGGPADYMELCKLYDKNENGTMMLAELENLLSNLADEVPKEDVAAILKELADPEDEDGFFPYKPFVDRL 437          
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Match: UPI000C774EC7 (myosin light chain alkali-like isoform X1 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C774EC7)

HSP 1 Score: 139 bits (349), Expect = 3.530e-39
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    7 DAEAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLAELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRL 432
            D E  K   DIYD++GK  +DLF+LGD +  L +N T K+   LG T ++G+ F K D+     +  K + D+ G+Y D+VE LKLYDK  NGTMML ELE+IL +LG+++ +E+V  L  E CDPED+DGF PY PF+ R+
Sbjct:    9 DIERAKFAFDIYDFEGKSRMDLFYLGDCLRGLNLNPTLKMIDKLGGTKKKGEAFLKLDEFFPIYSEVKKSKDT-GSYEDFVECLKLYDKMENGTMMLGELEHILLSLGEKLEREEVDILVKECCDPEDDDGFIPYEPFLKRV 149          
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Match: C1BVY3_LEPSM (Myosin light chain alkali n=2 Tax=Caligidae TaxID=72034 RepID=C1BVY3_LEPSM)

HSP 1 Score: 135 bits (341), Expect = 5.750e-38
Identity = 65/146 (44.52%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    7 DAEAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLAELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRLTGKA 444
            D E +K   D+YD+ G G++D F++GD++ A  +N T      LG   E+GKK  K DD       AK + D+ G + D+VE+LKLYDKNN+ T++  EL  +L NLG+++ KED + L  ELCDPED++GF P+MPF++R+   A
Sbjct:   17 DVEKIKFAFDVYDFKGDGKVDGFYIGDLLRACNLNPTNHSIDELGGQKEKGKKILKLDDFYPIFKQAKESKDTGGIH-DFVEILKLYDKNNDCTILTNELYRLLTNLGEKLTKEDAKSLMKELCDPEDDEGFTPFMPFLERMCSNA 161          
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Match: D7F1Q1_CRACN (Myosin light chain n=1 Tax=Crangon crangon TaxID=491138 RepID=D7F1Q1_CRACN)

HSP 1 Score: 129 bits (324), Expect = 1.700e-35
Identity = 62/143 (43.36%), Postives = 92/143 (64.34%), Query Frame = 1
Query:    7 DAEAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLAELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRLT 435
            D E VK    IYD++G G++D F++GD + AL +N T  +   LG T++  +K  K DD +      K   D+ G+Y D++E+LKLYDK  NGTMM AELE+IL +LG+ + K +++ +  E C PED++G  P+ PFV +LT
Sbjct:    9 DVERVKFAFSIYDFEGNGQIDAFYIGDCLRALNLNPTLALIAKLGGTEKRKEKMIKLDDFMPLFAQVKKDKDA-GSYEDFIEVLKLYDKAENGTMMYAELEHILLSLGERLDKAELEPILRECCPPEDDEGLIPFEPFVKKLT 150          
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Match: A0A8J5CLS5_CHIOP (Myosin light chain alkali n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J5CLS5_CHIOP)

HSP 1 Score: 125 bits (314), Expect = 5.560e-34
Identity = 61/143 (42.66%), Postives = 91/143 (63.64%), Query Frame = 1
Query:    7 DAEAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLAELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRLT 435
            D E  K    IYD++G G +D F++GD + AL +N T  V   +G  +++ +K  K DD +      K   D+ G+Y D++E+LKLYDK  NGTMM AELE+IL +LG+ + K +++ +  E C+ EDEDGF PY PF+ ++T
Sbjct:    9 DVERAKFAFSIYDFEGNGTMDSFYIGDCLRALNLNPTLAVITKVGGKEKKKEKMIKTDDFLPIFAQVKKDKDA-GSYEDFMEVLKLYDKTENGTMMYAELEHILLSLGERLEKTELEPVLKECCEEEDEDGFIPYEPFLKKMT 150          
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Match: V9P289_9MAXI (Myosin light chain alkali 1 n=1 Tax=Pseudodiaptomus annandalei TaxID=298510 RepID=V9P289_9MAXI)

HSP 1 Score: 125 bits (314), Expect = 5.900e-34
Identity = 59/140 (42.14%), Postives = 92/140 (65.71%), Query Frame = 1
Query:   13 EAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLAELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRL 432
            +A++   D+YD+ G G++D F+ GD++ A  +N T K    +G   ++GKKF    D      AAK + D  G + D+VE+LKLYDKNN+ TM+  EL  +L NLG+++ KE+ + L  ELC+PED++GF P+ PF++R+
Sbjct:   12 DAIEFAFDVYDFKGDGKVDAFYAGDLLRACNLNPTLKTIAEIGGESQKGKKFLSKADCFPLFKAAKDSKDQGGLH-DFVEILKLYDKNNDDTMLGHELFRLLTNLGEKLTKEETKGLMKELCEPEDDEGFMPFKPFLERM 150          
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Match: A0A514C9K9_SCYPA (Myosin light chain n=3 Tax=Portunidae TaxID=6757 RepID=A0A514C9K9_SCYPA)

HSP 1 Score: 124 bits (312), Expect = 1.120e-33
Identity = 61/143 (42.66%), Postives = 91/143 (63.64%), Query Frame = 1
Query:    7 DAEAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTDEEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLAELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRLT 435
            D E  K    IYD++GKG +D F++GD + AL +N T  V   +G   ++ +K  K DD +      K   D+ G++ D++E+LKLYDK  NGTM+ AELE+IL +LG+ + K +++ +  + CD EDEDGF PY PF+ +LT
Sbjct:    9 DVERAKFAFSIYDFEGKGTMDAFYVGDCLRALNLNPTLAVIEKVGGKTKKKEKMLKVDDFLPIFAQVKKDKDA-GSFEDFMEVLKLYDKTENGTMLYAELEHILLSLGERLEKSELEPVLKDCCDEEDEDGFIPYEPFLKKLT 150          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98693.31696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V9P370_9MAXI1.490e-9186.49Myosin light chain alkali 2 n=1 Tax=Pseudodiaptomu... [more]
UPI000C761DD02.470e-9084.46myosin light chain alkali-like n=1 Tax=Eurytemora ... [more]
C1BV71_LEPSM3.040e-7569.59Myosin light chain alkali n=5 Tax=Caligidae TaxID=... [more]
A0A553NUN5_TIGCA1.950e-6972.92Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
UPI000C774EC73.530e-3948.59myosin light chain alkali-like isoform X1 n=1 Tax=... [more]
C1BVY3_LEPSM5.750e-3844.52Myosin light chain alkali n=2 Tax=Caligidae TaxID=... [more]
D7F1Q1_CRACN1.700e-3543.36Myosin light chain n=1 Tax=Crangon crangon TaxID=4... [more]
A0A8J5CLS5_CHIOP5.560e-3442.66Myosin light chain alkali n=1 Tax=Chionoecetes opi... [more]
V9P289_9MAXI5.900e-3442.14Myosin light chain alkali 1 n=1 Tax=Pseudodiaptomu... [more]
A0A514C9K9_SCYPA1.120e-3342.66Myosin light chain n=3 Tax=Portunidae TaxID=6757 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98693contigEcto-sp8_S_contig98693:79..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score127.1
Seed ortholog evalue6.9e-27
Seed eggNOG ortholog61622.XP_010357705.1
Preferred nameMlc1
Model size447
KEGG koko:K12749
KEGG Pathwayko04260,ko04261,ko04371,ko05410,ko05414,map04260,map04261,map04371,map05410,map05414
Hectar predicted targeting categoryother localisation
GOsGO:0000146,GO:0003008,GO:0003012,GO:0003674,GO:0003774,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005859,GO:0006936,GO:0007498,GO:0008150,GO:0009888,GO:0015629,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032501,GO:0032502,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0048856,GO:0099080,GO:0099081,GO:0099512
Exons1
EggNOG free text desc.mesoderm development
EggNOG OGs3A20N@33154,3BQH8@33208,3D79F@33213,COG5126@1,KOG0030@2759
Cds size447
COG Functional cat.Z
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145355.0361648-CDS-Ecto-sp8_S_contig98693:78..5251681145355.0361648-CDS-Ecto-sp8_S_contig98693:78..525Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98693 79..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98693.31696.1prot_Ecto-sp8_S_contig98693.31696.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98693 79..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98693.31696.1

>prot_Ecto-sp8_S_contig98693.31696.1 ID=prot_Ecto-sp8_S_contig98693.31696.1|Name=mRNA_Ecto-sp8_S_contig98693.31696.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=149bp
MVDAEAVKKVCDIYDWDGKGELDLFFLGDVMYALGMNTTKKVCVGLGQTD
EEGKKFAKFDDIVEKVNAAKVAPDSSGTYADYVELLKLYDKNNNGTMMLA
ELENILANLGDEIPKEDVQKLFAELCDPEDEDGFFPYMPFVDRLTGKA*
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mRNA from alignment at Ecto-sp8_S_contig98693:79..525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98693.31696.1 ID=mRNA_Ecto-sp8_S_contig98693.31696.1|Name=mRNA_Ecto-sp8_S_contig98693.31696.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=447bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98693:79..525- (Ectocarpus species8 EcLAC_412)
ATGGTCGACGCTGAGGCAGTTAAAAAGGTCTGTGACATCTACGATTGGGA TGGCAAGGGTGAACTCGATCTGTTCTTCCTTGGAGATGTCATGTATGCTC TTGGCATGAACACCACCAAGAAGGTCTGTGTGGGTCTTGGCCAGACTGAT GAGGAGGGCAAGAAGTTCGCCAAGTTTGATGACATTGTTGAGAAGGTCAA TGCCGCTAAGGTTGCCCCTGACAGCTCAGGAACCTATGCCGACTATGTTG AGCTCCTTAAGCTTTACGACAAAAACAACAACGGAACCATGATGCTTGCT GAGCTTGAAAACATCCTTGCCAATCTTGGAGATGAAATCCCCAAGGAAGA TGTCCAGAAACTGTTTGCTGAGCTCTGTGATCCTGAGGATGAGGATGGAT TCTTCCCATACATGCCATTTGTCGACAGACTGACCGGCAAGGCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98693:79..525-

>mRNA_Ecto-sp8_S_contig98693.31696.1 ID=mRNA_Ecto-sp8_S_contig98693.31696.1|Name=mRNA_Ecto-sp8_S_contig98693.31696.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98693:79..525- (Ectocarpus species8 EcLAC_412)
ATGGTCGACGCTGAGGCAGTTAAAAAGGTCTGTGACATCTACGATTGGGA
TGGCAAGGGTGAACTCGATCTGTTCTTCCTTGGAGATGTCATGTATGCTC
TTGGCATGAACACCACCAAGAAGGTCTGTGTGGGTCTTGGCCAGACTGAT
GAGGAGGGCAAGAAGTTCGCCAAGTTTGATGACATTGTTGAGAAGGTCAA
TGCCGCTAAGGTTGCCCCTGACAGCTCAGGAACCTATGCCGACTATGTTG
AGCTCCTTAAGCTTTACGACAAAAACAACAACGGAACCATGATGCTTGCT
GAGCTTGAAAACATCCTTGCCAATCTTGGAGATGAAATCCCCAAGGAAGA
TGTCCAGAAACTGTTTGCTGAGCTCTGTGATCCTGAGGATGAGGATGGAT
TCTTCCCATACATGCCATTTGTCGACAGACTGACCGGCAAGGCCTAA
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