mRNA_Ecto-sp8_S_contig98683.31692.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98683.31692.1
Unique NamemRNA_Ecto-sp8_S_contig98683.31692.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98683.31692.1 vs. uniprot
Match: D7G579_ECTSI (Enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G579_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 3.130e-33
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 2 
Query:    2 FARRRLPQVAGGLDALRTGGRLLKDPVPVVLAVCDAAAAKIGPPVRGAEPRWSCVEALRAAAAGD 196
            FARRRLPQVAGGLDALRTGGRLLKDPVPVVLAVCDAAAAKIGPPVRGAEPRWSCVEALRAAAAGD
Sbjct:  189 FARRRLPQVAGGLDALRTGGRLLKDPVPVVLAVCDAAAAKIGPPVRGAEPRWSCVEALRAAAAGD 253
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BLAST of mRNA_Ecto-sp8_S_contig98683.31692.1 vs. uniprot
Match: A0A6H5JH35_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH35_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.450e-32
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 2 
Query:    2 FARRRLPQVAGGLDALRTGGRLLKDPVPVVLAVCDAAAAKIGPPVRGAEPRWSCVEALRAAAAG 193
            FARRRLPQVAGGLDALRTGGRLLKDPVPVVLA+CDAAAAKIGPPVRGAEPRWSCVEALRAAAAG
Sbjct:   91 FARRRLPQVAGGLDALRTGGRLLKDPVPVVLALCDAAAAKIGPPVRGAEPRWSCVEALRAAAAG 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98683.31692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G579_ECTSI3.130e-33100.00Enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme ... [more]
A0A6H5JH35_9PHAE4.450e-3298.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98683contigEcto-sp8_S_contig98683:9..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size201
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145354.748366-CDS-Ecto-sp8_S_contig98683:8..811681145354.748366-CDS-Ecto-sp8_S_contig98683:8..81Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98683 9..81 +
1681145354.7718325-CDS-Ecto-sp8_S_contig98683:396..5211681145354.7718325-CDS-Ecto-sp8_S_contig98683:396..521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98683 397..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98683.31692.1prot_Ecto-sp8_S_contig98683.31692.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98683 9..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98683.31692.1

>prot_Ecto-sp8_S_contig98683.31692.1 ID=prot_Ecto-sp8_S_contig98683.31692.1|Name=mRNA_Ecto-sp8_S_contig98683.31692.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=66bp
VCKEAFASGRRGSRRVAYRRQAAQGPRARSTCGLRRRRREDRSSRTRCRA
QVVMRRGPEGGGRWRR
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mRNA from alignment at Ecto-sp8_S_contig98683:9..523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98683.31692.1 ID=mRNA_Ecto-sp8_S_contig98683.31692.1|Name=mRNA_Ecto-sp8_S_contig98683.31692.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=515bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98683:9..523+ (Ectocarpus species8 EcLAC_412)
GTTTGCAAGGAGGCGTTTGCCTCAGGTCGCAGGGGGTCTCGACGCGTTGC
GTACCGGAGGCAGGCTGCTCAAGGTGCAGTTCCAAGAACAGAAATTTCGT
TGGCCGTGGTTCCTGCTGCAAAGGGACGATGATATCCAAAATAAAACGAG
AAACATTTACCCGTGTGTGCAGGGCTGTCTGTGTGGCTGCGCCACACCAC
TAAGTAGCGACCACACCGAAATTAATTGCCATACAGAATATCGAAGTAGC
GCGTCTCTTTCTCCCTCCCGTTCGCCCTCGAGTGCTTTTGAACACATCCT
TTCCCCAACCTAAAGCTGTGGCTCCTCTTATCCTTAAGCTCTCGTTCCTC
TCCTTGTGGGCTGACTGCCCTATCCTATCCTATGGTAGGACCCCGTGCCC
GTAGTACTTGCGGTCTGCGACGCCGCCGCCGCGAAGATCGGTCCTCCCGT
ACGCGGTGCAGAGCCCAGGTGGTCATGCGTCGAGGCCCTGAGGGCGGCGG
CCGCTGGCGACGGCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98683:9..523+

>mRNA_Ecto-sp8_S_contig98683.31692.1 ID=mRNA_Ecto-sp8_S_contig98683.31692.1|Name=mRNA_Ecto-sp8_S_contig98683.31692.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98683:9..523+ (Ectocarpus species8 EcLAC_412)
GTTTGCAAGGAGGCGTTTGCCTCAGGTCGCAGGGGGTCTCGACGCGTTGC
GTACCGGAGGCAGGCTGCTCAAGGACCCCGTGCCCGTAGTACTTGCGGTC
TGCGACGCCGCCGCCGCGAAGATCGGTCCTCCCGTACGCGGTGCAGAGCC
CAGGTGGTCATGCGTCGAGGCCCTGAGGGCGGCGGCCGCTGGCGACGG
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