mRNA_Ecto-sp8_S_contig9867.31690.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp8_S_contig9867.31690.1
Unique Name	mRNA_Ecto-sp8_S_contig9867.31690.1
Type	mRNA
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)

Homology

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BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Match: D7FZB0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB0_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 4.370e-70
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 1

Query:    1 RDYTHLGCFMDNQSDRVLGQKLVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFDLEYERHGEAEELCDYKCGGDNNEICGGYFAFDLYEIESLTTM 303
            RDYTHLGCF+DNQSDRVLG KLVDEEVDTEFCYDYCLE+NAPFMATQWGIECWCATE DLEYERHGEAEELCDYKCGGDNNEICGGY+AFDLYEIES TT+
Sbjct:   45 RDYTHLGCFVDNQSDRVLGHKLVDEEVDTEFCYDYCLEKNAPFMATQWGIECWCATEVDLEYERHGEAEELCDYKCGGDNNEICGGYYAFDLYEIESFTTI 145

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BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Match: D8LRJ2_ECTSI (Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ2_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 4.720e-70
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1

Query:    1 RDYTHLGCFMDNQSDRVLGQKLVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFDLEYERHGEAEELCDYKCGGDNNEICGGYFAFDLYEIESLTTM 303
            RDYTHLGCF+DN+SDRVLG KLVDEEVDTE CYDYCLEQNAPFMATQWGIECWCATE DLEYERHGEAEELCDYKCGGDNNEICGGY AFDLYEIES TTM
Sbjct:   75 RDYTHLGCFVDNRSDRVLGYKLVDEEVDTELCYDYCLEQNAPFMATQWGIECWCATEPDLEYERHGEAEELCDYKCGGDNNEICGGYLAFDLYEIESFTTM 175

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BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Match: D8LNN0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN0_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 9.100e-62
Identity = 86/101 (85.15%), Postives = 90/101 (89.11%), Query Frame = 1

Query:    1 RDYTHLGCFMDNQSDRVLGQKLVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFDLEYERHGEAEELCDYKCGGDNNEICGGYFAFDLYEIESLTTM 303
            RDYTHLGCF+D +SDRVLG KL DEEVDTEFCYDYC EQNAP MATQWGIECWCA E DL+YERHGEA ELCDYKCGGDN EICGGY AFDLY IESLTT+
Sbjct:   40 RDYTHLGCFVDKKSDRVLGNKLADEEVDTEFCYDYCEEQNAPLMATQWGIECWCANEVDLDYERHGEAGELCDYKCGGDNKEICGGYNAFDLYVIESLTTI 140

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BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Match: A0A6H5K2N3_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N3_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.260e-60
Identity = 83/101 (82.18%), Postives = 90/101 (89.11%), Query Frame = 1

Query:    1 RDYTHLGCFMDNQSDRVLGQKLVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFDLEYERHGEAEELCDYKCGGDNNEICGGYFAFDLYEIESLTTM 303
            R+YTHLGCF+D +SDRV+G K+ DEEVDTEFCYDYCL +NAP MATQWGIECWCATE DLEYERHGEAEELCDYKCGGD  E CGGY AFDLY IESLTT+
Sbjct:   40 RNYTHLGCFVDKKSDRVMGHKIADEEVDTEFCYDYCLGENAPLMATQWGIECWCATEVDLEYERHGEAEELCDYKCGGDKTENCGGYNAFDLYVIESLTTI 140

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BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Match: A0A6H5KHF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.050e-29
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1

Query:    7 YTHLGCFMDNQSDRVLGQKLVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFDLEYERHGEAEELCDYKCGGDNNEICGGYFAFDLYEI 285
            Y ++GC+ D Q DRVLG KL  + +  +FCY+YC E  A +MATQ+  EC+C+ + DL+YERHG A  +C+  C GD  E CGG  AFDLY+I
Sbjct:   21 YEYVGCYTDRQDDRVLGDKLDSDLMTADFCYEYCSEMGAAYMATQYAFECFCSADEDLDYERHGTA--MCNMGCLGDEGETCGGENAFDLYKI 111

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BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 8.660e-28
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1

Query:    7 YTHLGCFMDNQSDRVLGQK-LVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFDLEYERHGEAEELCDYKCGGDNNEICGGYFAFDLYEI 285
            Y H+GCF D+QSDRVL +  L+  ++  E CY+ C  + A +MATQWG+ECWC+ +  L+Y+RHG+   +CDY C GD +E CGG  +F+LY +
Sbjct: 1145 YEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYMATQWGVECWCSRDGSLDYDRHGDTG-VCDYPCRGDESETCGGVHSFNLYRL 1237

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BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.030e-27
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 1

Query:    7 YTHLGCFMDNQSDRVLGQKLVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFDLEYERHGEAEELCDYKCGGDNNEICGGYFAFDLYEI 285
            Y ++GC+ D Q DR+LG KL  + +  +FCY+YC E  A +MATQ+  EC+C+ + DL+YERHG A  +CD  C GD  E CGG  AFDLY I
Sbjct:  334 YEYVGCYTDRQDDRILGDKLDSDLMTADFCYEYCSEIGAAYMATQYAFECFCSADEDLDYERHGTA--MCDKACRGDEGETCGGENAFDLYRI 424

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BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.670e-27
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 1

Query:    7 YTHLGCFMDNQSDRVLGQKLVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFDLEYERHGEAEELCDYKCGGDNNEICGGYFAFDLYEIESLT 297
            Y+++GCF D++ DRV         + T  C +YCL++ A FMATQ+GIECWC+ + ++EY+RH +   +CD +CGG+  +ICGG+ AFDLY+I   T
Sbjct:   11 YSYVGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSDG--VCDCECGGEATDICGGFDAFDLYKITEPT 105

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BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 5.400e-27
Identity = 46/100 (46.00%), Postives = 69/100 (69.00%), Query Frame = 1

Query:   13 HLGCFMDNQSDRVLGQKLVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFDLEYERH---GEAEELCDYKCGGDNNEICGGYFAFDLYEIESLTTM 303
            ++GCF DN+ DR+LG KL   ++ TE C  +C E  A FMATQ+G ECWC+ +  L+YERH    +A+ +CD  C GD  + CGG+ +FDLY++++ +T+
Sbjct:  398 YVGCFHDNKEDRILGDKLDSVDMTTEVCLAHCTELGAAFMATQFGFECWCSADELLDYERHYQMNDADAVCDMSCRGDKTQPCGGFNSFDLYKLQTTSTV 497

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BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Match: D8LED9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED9_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 6.190e-27
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1

Query:    7 YTHLGCFMDNQSDRVLGQKLVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFDLEYERHGEAEELCDYKCGGDNNEICGGYFAFDLYEI 285
            Y+++GCF DN+ DRV         + T  C +YCLE+ A +MATQ+GIECWC+ + + EY+RH +   +CD+ CGGD  + CGG+ AFDLY+I
Sbjct:  400 YSYVGCFADNKHDRVFEYMRTSFTMTTAVCLEYCLERRATYMATQYGIECWCSVDAETEYDRHSDG--VCDHACGGDEADYCGGFDAFDLYKI 490

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig9867.31690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FZB0_ECTSI	4.370e-70	93.07	WSC domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LRJ2_ECTSI	4.720e-70	93.07	Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI...	[more]
D8LNN0_ECTSI	9.100e-62	85.15	WSC domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5K2N3_9PHAE	1.260e-60	82.18	WSC domain-containing protein n=2 Tax=Ectocarpus s...	[more]
A0A6H5KHF5_9PHAE	1.050e-29	51.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FRE8_ECTSI	8.660e-28	48.94	EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]
D8LMS9_ECTSI	1.030e-27	51.61	EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM...	[more]
A0A6H5JMV6_9PHAE	2.670e-27	46.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FU28_ECTSI	5.400e-27	46.00	EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]
D8LED9_ECTSI	6.190e-27	48.39	EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig9867	contig	Ecto-sp8_S_contig9867:5886..6676 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	195.7
Seed ortholog evalue	9.8e-48
Seed eggNOG ortholog	2880.D7FZB0
Model size	306
Hectar predicted targeting category	other localisation
Exons	3
EggNOG OGs	2EPZM@1,2ST37@2759
Cds size	279
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681145354.587524-UTR-Ecto-sp8_S_contig9867:5885..5912	1681145354.587524-UTR-Ecto-sp8_S_contig9867:5885..5912	Ectocarpus species8 EcLAC_412	UTR	Ecto-sp8_S_contig9867 5886..5912 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681145354.59935-CDS-Ecto-sp8_S_contig9867:5912..5975	1681145354.59935-CDS-Ecto-sp8_S_contig9867:5912..5975	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig9867 5913..5975 +
1681145354.6097305-CDS-Ecto-sp8_S_contig9867:6195..6345	1681145354.6097305-CDS-Ecto-sp8_S_contig9867:6195..6345	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig9867 6196..6345 +
1681145354.6212652-CDS-Ecto-sp8_S_contig9867:6610..6676	1681145354.6212652-CDS-Ecto-sp8_S_contig9867:6610..6676	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig9867 6611..6676 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig9867.31690.1	prot_Ecto-sp8_S_contig9867.31690.1	Ectocarpus species8 EcLAC_412	polypeptide	Ecto-sp8_S_contig9867 5913..6676 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp8_S_contig9867:5886..6676+
coding sequence from alignment at Ecto-sp8_S_contig9867:5886..6676+

protein sequence of mRNA_Ecto-sp8_S_contig9867.31690.1

>prot_Ecto-sp8_S_contig9867.31690.1 ID=prot_Ecto-sp8_S_contig9867.31690.1|Name=mRNA_Ecto-sp8_S_contig9867.31690.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=93bp
MDNQSDRVLGQKLVDEEVDTEFCYDYCLEQNAPFMATQWGIECWCATEFD
LEYERHGEAEELCDYKCGGDNNEICGGYFAFDLYEIESLTTM*

mRNA from alignment at Ecto-sp8_S_contig9867:5886..6676+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp8_S_contig9867.31690.1 ID=mRNA_Ecto-sp8_S_contig9867.31690.1|Name=mRNA_Ecto-sp8_S_contig9867.31690.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=791bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9867:5886..6676+ (Ectocarpus species8 EcLAC_412)
AGGGATTACACCCACCTGGGATGCTTCATGGACAACCAGAGCGACCGCGT
GTTGGGGCAAAAGCTTGTCGATGAGGAAGTCGACACCGAGGTAAGACATT
AATCAAGTACCGCTGGTGTGCTCTGTCGCGTTCGCCGTTTCTTTTTTTCC
CTTTCCTCATCGCATCGGCCAGCTATCTGCTTGGCGCCAGTCGGAATGGT
GCACTACTTGTTTCAGCCGAAGGGTTGAACCAATATTGAACAGTACGTAT
GCGTACGTCTGTTAATCCGTGCAACCGTGTTCGTTTTCCCCTCGATTTTT
GTTTCTTCAGTTCTGTTACGACTACTGCTTGGAACAGAACGCGCCCTTTA
TGGCTACCCAGTGGGGGATCGAGTGCTGGTGCGCCACCGAGTTTGACTTG
GAATACGAACGCCACGGAGAGGCCGAAGAGTTGTGCGACTACAAATGCGG
GGGAGACAATGTACGAAGGGCTTTTACTACTCCAGTTTTGTGCTGAACGC
GTGTCGCGCTTGGTTGTCTTCTTGTAGACACACCTAGACTGTTCCCAGCC
GAGGCAACCAATCTGCTGGTACTCACTTGTTTACATACATACTGTTCCTG
TTGGTACCCGACCCCCCAATTGGTACCGATGCGTTTCTTGGAATTTCCCT
GATAATCTAACCCACCTCGATGCCCTCCCCTCGTCTTGATCCCTCTGACT
ATTTTTCTTGCGCTACTGTACGCAGAACGAAATTTGCGGCGGCTACTTCG
CCTTCGACTTGTACGAGATCGAGTCGTTGACCACCATGTGA

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9867:5886..6676+

>mRNA_Ecto-sp8_S_contig9867.31690.1 ID=mRNA_Ecto-sp8_S_contig9867.31690.1|Name=mRNA_Ecto-sp8_S_contig9867.31690.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9867:5886..6676+ (Ectocarpus species8 EcLAC_412)
ATGGACAACCAGAGCGACCGCGTGTTGGGGCAAAAGCTTGTCGATGAGGA
AGTCGACACCGAGTTCTGTTACGACTACTGCTTGGAACAGAACGCGCCCT
TTATGGCTACCCAGTGGGGGATCGAGTGCTGGTGCGCCACCGAGTTTGAC
TTGGAATACGAACGCCACGGAGAGGCCGAAGAGTTGTGCGACTACAAATG
CGGGGGAGACAATAACGAAATTTGCGGCGGCTACTTCGCCTTCGACTTGT
ACGAGATCGAGTCGTTGACCACCATGTGA