mRNA_Ecto-sp8_S_contig9865.31689.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9865.31689.1
Unique NamemRNA_Ecto-sp8_S_contig9865.31689.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9865.31689.1 vs. uniprot
Match: D8LBX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX2_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 2.200e-45
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:    1 MEVAADARAKGNFPKVSPERANVTQKCAQEYLLRVLRTNPNNKQAWEELGQCYLETGSLENSLEAYRRAVALTKGSDEDSA 243
            MEVAADARAKGNFPKVSPERANVT+  AQEYLLRVLRTNPNNKQAWEELGQCYLETGSLENSLEAYRRAVALTKGSDEDSA
Sbjct:    1 MEVAADARAKGNFPKVSPERANVTE--AQEYLLRVLRTNPNNKQAWEELGQCYLETGSLENSLEAYRRAVALTKGSDEDSA 79
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BLAST of mRNA_Ecto-sp8_S_contig9865.31689.1 vs. uniprot
Match: A0A6H5JXC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC1_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.110e-36
Identity = 67/81 (82.72%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:    1 MEVAADARAKGNFPKVSPERANVTQKCAQEYLLRVLRTNPNNKQAWEELGQCYLETGSLENSLEAYRRAVALTKGSDEDSA 243
            MEVAADAR+KGNFPK            AQEYLLRV+RTNPNNKQAWEELGQCYLETGSLENSLEAYRRAVALTKGSDEDSA
Sbjct:    8 MEVAADARSKGNFPK------------AQEYLLRVVRTNPNNKQAWEELGQCYLETGSLENSLEAYRRAVALTKGSDEDSA 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9865.31689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBX2_ECTSI2.200e-4596.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXC1_9PHAE1.110e-3682.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9865contigEcto-sp8_S_contig9865:3..3730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size243
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_003600.1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145354.5387487-CDS-Ecto-sp8_S_contig9865:2..1131681145354.5387487-CDS-Ecto-sp8_S_contig9865:2..113Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9865 3..113 -
1681145354.5499644-CDS-Ecto-sp8_S_contig9865:2730..27811681145354.5499644-CDS-Ecto-sp8_S_contig9865:2730..2781Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9865 2731..2781 -
1681145354.5602987-CDS-Ecto-sp8_S_contig9865:3649..37301681145354.5602987-CDS-Ecto-sp8_S_contig9865:3649..3730Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9865 3650..3730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9865.31689.1prot_Ecto-sp8_S_contig9865.31689.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9865 3..3730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9865.31689.1

>prot_Ecto-sp8_S_contig9865.31689.1 ID=prot_Ecto-sp8_S_contig9865.31689.1|Name=mRNA_Ecto-sp8_S_contig9865.31689.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=81bp
MEVAADARAKGNFPKVSPERANVTQKCAQEYLLRVLRTNPNNKQAWEELG
QCYLETGSLENSLEAYRRAVALTKGSDEDSA
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mRNA from alignment at Ecto-sp8_S_contig9865:3..3730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9865.31689.1 ID=mRNA_Ecto-sp8_S_contig9865.31689.1|Name=mRNA_Ecto-sp8_S_contig9865.31689.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3728bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9865:3..3730- (Ectocarpus species8 EcLAC_412)
ATGGAGGTGGCCGCAGACGCTCGGGCAAAAGGGAACTTCCCCAAGGTCAG
TCCTGAGAGAGCGAACGTCACACAGAAGTGCGTGCGCGGTAGGCGGCGGC
GGCCGCGGCCGCGGCGTGTAATTTTTTCAGCAAAGCAGCACCGAAAGTGC
GCCGTCGCGAGGGCGAGTGGCTGTCAACGCGCCTCGAGATCTCGATGGCC
CGTACCATTCTTGCTCTCCGCATCGTGTCGAGCAGTAGGCCGTGCTGCGT
GGTTCTCTGAAGCCACGTCTTGCCGCCATCTTCTCGGTACAACTCAGCGG
GATGTGTGTCGGCCGTTTATTTTCTGCTGGCTGACAAAAGTAGCAGCCAG
GCAACAGCAGGTAGAAAAAAGTAGAACAGGATCCAGCGGAGCATTTTCAT
CCTTGTACCGTAGTGCGGCGAGACATGGGGTGGTGCTGGGTGCTGGTCCC
ACGTTCGCGTTTTCGTCTGTAGCGTCTGACGTTGGGATATATGCGACGCT
GATCCAGCGAGCCCATGGTGGAACTGCGCTGGCGATCCACAGCCTAAAAA
GCTGGCTCTTTCCGTCTTCCATCGATGATTTTTTTTCAGCAGCTAGCTGG
AGTTTTTGGCGGCGTGGTCGGGCCTTTGCCCCCATCCGCCCGATGATCTC
TACGACAATGTTTTACTTGTCCTCTTCGTCACGCTCCCCCTTGCCTTCCT
CTCTACCTACGGGCTCGTTCCTTGCACTACAACGCTTTCTCTGTCCCTGT
CGGCGGCGGCTGCTGTTGCTGCTGCTGCTGCTGCCCAACCCTCTCCCCAC
ATTTCATCCCGTTCCTCGGCCCTCCTATTTTTTTTGGTCACTGCGTCTCT
CCGGGGTCCGAATGTCCTGCTGTGTCGTCGTTGCGTGTGTCGCGGTTGAC
CTCGACGCCTGCCTGCCTGCCCTACCCACGTCGTTGCTCTGCACGACAGG
CGCAGGAATATCTGCTACGAGTTCTCAGGACTAACCCCAACAACAAGCAG
GTAAGGTTCCCCGACGGACAACTGGTAAAGTTGAACGATATGCATATGAG
ATTCAATGCGACTTGTATACTTTTGCCGCATTCCAACACATCTGAACCCT
GACCTGCGGCCATCCAGCCGCCGATGGTATGCATACAAATACAGGAAGTT
TGCAATTGGAAAATTTTTGATGTCTCCGTTTTTTTTGTTGCCGTCTCCCT
GCTGTGTGATACTTGTTGGGGAAAAAAGGGCTCCCTGCCTTGCATATCGC
TTCAGTCATTTCGTGCGATCATAGATCAAAGAAGCACCATTGCTTCTCCT
CCTCGCACCATTTTTTCTCTCGCTGCCAAGAACCTTTTTTTCAGTATTAT
TAATTGTTAGTCGCATCTTGTTGGGACGAAGGTTGAACATTAACATTCCT
TTGACATAGAAGGAAGTGTTTTTAATAGTGTTGAACCGCAAAGAACGATC
GCGCGATTCTGGTTGGAGGGCGCATGCCGAGCACCAGCCACTCCTCTCTC
ATACGAAGAACTTCATTTTTACGCATCCTTCGGGTGTGGCACGATTACCA
TATCGACGGGAGACAGACGTAGATAGACAACGTGTTGTCCTCGTTATTTA
CCCTCCAATTCTCGAGGGCGCGTCCCGTAGCTTGCCCGAGCACCGATGTA
TATCGTTGGACAAGCTTTTATGAGAGGGGATGCACAACCATTGGATGCGT
TCTGCGTTTTCTTCGCCCCATTTGTTTTTTCGTGCGAGTTTTGGTCGTAC
AGCAGCAGTAGTAAGTTCAACGGCAGTATCGAAGTGCCATTGAACTACTT
GTCCCAAAGCGGAGCCTTCGGCTCCTCGGTACCCAGGTATCTATGCATAC
CGAAGTGCATTTTTGCGTTTGAACCCGCTACACAAAGGTCCGCGCGAAAG
CAAGAGCTTCCAAGGGCTATTTTATTAGAGACTTCCAAGCAGGTTCATCC
GCACCACACTGCCCTCCTGCCCTCGAGCGGTTTCTGGGTTAGATGCTGAT
GTGTATCCCGCGGGCCTGTAGCAGCAAAGGTAGGGAGCCAACGGCGTTCC
TTTTGTGGAGGCTGCCTGCATCCCAGGCGTTAATTTCACACACAAAGTTG
ACACCTTCCCGCACTGCTGGCACTATTACCACTCCTTCTCTAGGCTCCTG
CCTGCCGCTGCTGGTGCCGCAATGTTGTCGAGGAACTAACCGCTCGGAGA
GCGAGAGAAATTCATGAAAACATTTGAAAATCTGCACTTTGGGGGTAGTT
TTGTCCTTGCGATGGAGGAGCGTCTCGGAACGCCCGTCAGAGTACATGTG
CAGCAGACGCAAACACGCATCACAGGCCTTCTTCAGAAATATATGCATTC
ATTCAACCAGACTTGGTTCGAGATAACACCTACAGCAGTCCAATCGAAGC
CTTGTTCAATTCCATGGATAAATCCGTCAATGCTGCAGCTCGTACTGTGA
TTGCTGCTTTCATATATCACGGGTCAGACGTGTACTGGCAGGGGAAACCG
GAACCTGTCTTCAGACTACGACCATGATACGTGACACAACTTAGCACTGC
ACAGAATGCTACATGCCCAGCGAGCAGCAGAATCAGCAGCAGTCGCGGAA
AAAAAAGTTATAAATTGCATGCATATTTGCCTGGAAAGCATGCCTCAACG
ACCACACGATCCTACCCTCGTGCTTGAAATCTGTCCGAAAGTGCGCTTAA
GGGCCCCCAGAACAGCAAGTTCGATGTTGACTAATTTTGAAAACATAAAC
AAGAGCACCAGAAACTGTACAACAGACACACAAGACCAGTCGGGAGGCAT
CGCAAAAAACAGAAATCGTTGAATCCCGCACAGGGCGACAGTGCAATAGA
GGCTGCTAAAAACATACATTTCACGCGTCTACCTCCGCACGCCCCCTTTG
AAATCAAGATAAAAATTCGCCCCCATTCTAATTTCAAGTCAAAAGAGCCA
AAACGGCAGGCGTTCAAATAAGGTCTGTGTTGACAGTACCTGGTAATTAG
TACTGGTATCAGTAGAGGACACCATGAAGAGGCTTCGTGCGTGCTGGCAC
GTTCAGGTTTGCCACTGGAGCTGAAATATCGAAGGTTGCAGCAGTCCTGA
AAACAGTCCGAAATCTGCGCCGGAACCAAGCGGCATCCAACATTTGGCAC
AGCCGTGCTCACCGCCACGGAGCCCAATCTCCTGAACTGTGCGTTTACAG
CAGTAGCTCATACCACGAGCTACTGCGGACAACCCTCCGTTGAATTGCAG
TATGAGAAAAAGAGCCAGCGTCAAAACCCCTGTTCTGGGGGCCCTTAAAA
CGTTCTCAATAGTTTGCATACGCTTTTTCGGTAATTTATTTTCGTCCCCC
GCGTATAAAGCTGCTTTTGTGCAAATCCCTGACTCTAAATTCGTGTTGTT
CCGTTTGGTTCTCCGAAACGCCATCCCTTTTCTACAGCGCGTTTTTTTTT
TGGGAGCCTGGCGCACCTTCATACAAGATTTTATTTTGCCTCCCGAGGGC
AGCGCGGGCAAGAATCGCACGTTGCATCTTCTTGTTGTCTATACCCTGAG
CAACGCTTTTCTGTCGCTGGCGAGAACTAAAACCCATCGTTTTTGCGACG
ATGCCTGCCCCTCGTAGGCGTGGGAAGAGCTTGGCCAGTGCTACCTCGAG
ACGGGGAGCCTGGAGAACTCGCTGGAGGCCTACCGACGAGCGGTAGCACT
CACCAAAGGCAGCGATGAAGACAGCGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9865:3..3730-

>mRNA_Ecto-sp8_S_contig9865.31689.1 ID=mRNA_Ecto-sp8_S_contig9865.31689.1|Name=mRNA_Ecto-sp8_S_contig9865.31689.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9865:3..3730- (Ectocarpus species8 EcLAC_412)
ATGGAGGTGGCCGCAGACGCTCGGGCAAAAGGGAACTTCCCCAAGGTCAG
TCCTGAGAGAGCGAACGTCACACAGAAGTGCGCGCAGGAATATCTGCTAC
GAGTTCTCAGGACTAACCCCAACAACAAGCAGGCGTGGGAAGAGCTTGGC
CAGTGCTACCTCGAGACGGGGAGCCTGGAGAACTCGCTGGAGGCCTACCG
ACGAGCGGTAGCACTCACCAAAGGCAGCGATGAAGACAGCGCC
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