mRNA_Ecto-sp8_S_contig9863.31686.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9863.31686.1
Unique NamemRNA_Ecto-sp8_S_contig9863.31686.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Match: A0A6H5LBI9_9PHAE (PLCXc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBI9_9PHAE)

HSP 1 Score: 583 bits (1504), Expect = 3.020e-205
Identity = 285/290 (98.28%), Postives = 286/290 (98.62%), Query Frame = 1
Query:    1 TEWMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLKAGVRVLDLRCGYVGREAQKNDRVQDGIAVVHDKHRTSLSLRKALECVKGFVQAHPSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQQKGRVGILWNAVEAREPPFWPGVRQAWTGAESVRSLHDLAEAELGDKNGLLWSLPLVLPAGVPRPVPHIPEHLDDWLSAGGVWQDHASIVACDFVEETQLVRNCVGACLMKMARASAEGDAAAHAGGG 870
            TEWMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWA TQNLGVLAQLKAGVRVLDLRCGYVGREAQKNDRVQDGIAVVHDKHRTSLSLRKALECVKGFVQAHPSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQQKGRVGILWNAVEAREP FWPGVRQAWTGAESVRSLHDLAEAEL +KNGLLWSLPLVLPAGVPRPVPHIPEHLDDWLSAGGVWQDHASIV CDFVEETQLVRNCVGACLMKMARASAEGDAAAHAGGG
Sbjct:  236 TEWMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWAKTQNLGVLAQLKAGVRVLDLRCGYVGREAQKNDRVQDGIAVVHDKHRTSLSLRKALECVKGFVQAHPSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQQKGRVGILWNAVEAREPHFWPGVRQAWTGAESVRSLHDLAEAELAEKNGLLWSLPLVLPAGVPRPVPHIPEHLDDWLSAGGVWQDHASIVTCDFVEETQLVRNCVGACLMKMARASAEGDAAAHAGGG 525          
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Match: UPI00106A8DB1 (uncharacterized protein LOC114520878 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A8DB1)

HSP 1 Score: 111 bits (277), Expect = 6.030e-24
Identity = 84/274 (30.66%), Postives = 133/274 (48.54%), Query Frame = 1
Query:    4 EWMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLKAGVRVLDLRCGYVGREAQKNDRVQDGIAVVHDKHRTSLSLRKALECVKGFVQAHPS--ELVLLDFHRFPGLGHGA----PHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQ-----QKGRVGILWNAVEAREPPFWPGVRQAW-TGAESVRSLHDLAEAELGDKNGLLWSLPLVLPAGVPRPVPHIPEHLD----DWLSAGGVWQDHASIVACDFVEE 777
            +WM  Y+  L  L L+EM+LPGTHDSGT    + + + W  TQ+L +  QL+ GVR LDLR G    +    D V     +VHDK RTS +L  AL+ +  F+    +  E+++LDFHRF  LG        ++K  A + S L G    ++  +  H   G+ + +      KGR+ + WN     +   WPGV Q W   A+++  L+   + ++ +    LW+    + +    P        D     W   G  + + A+I++ DFV +
Sbjct:  165 KWMSYYSDVLGKLTLTEMTLPGTHDSGTHDPKSSLGALWIKTQSLSLGQQLQFGVRALDLRIG----QNSPGDYV-----IVHDKWRTSYTLAAALKEITDFIDQDSTNKEIIILDFHRFVKLGRRVRRRYDYDKLKAQIRSCLTG---YLLPVQNGH---GKQLQEIWQTCGKGRLVVAWNTSNP-DSYMWPGVNQRWYANADTLIKLYGAIKTDMLNPPSGLWASCSFMESSAVHPPSRNAIAADPTIKQWYYGGSTFCEKANIISVDFVRK 422          
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Match: UPI000D7982C5 (hypothetical protein n=2 Tax=Pseudomonadaceae TaxID=135621 RepID=UPI000D7982C5)

HSP 1 Score: 96.7 bits (239), Expect = 1.630e-18
Identity = 66/192 (34.38%), Postives = 98/192 (51.04%), Query Frame = 1
Query:    7 WMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLKAGVRVLDLRCG-YVGREAQKNDRVQDGIAVVHDKHRTSLSLRKALECVKGFVQAHPSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQQKGRVGILWNAVEAREPPFWPGVRQAWTGAE 579
            WM  Y  A A+L++ EM LPGTH+SG+ K  +   + + T Q++   AQL+ G+RVLDLR   Y G  A    R      + H            L+      +A+P E+V+LDFH+F      A H + A V+    G +   +I PK++ L   ++ + QK  V I ++    R+P FWPGV Q W G +
Sbjct:   89 WMGYYPGATASLRIDEMILPGTHNSGSDKQAD-YTNSYDTCQDVSPHAQLQTGIRVLDLRVRFYPGYPAGDWKRFM----IYHSLDSGRTVRGDILQAAMNLYKAYPKEVVILDFHQFSNFTDAA-HRELANVIKQTFGDK---LIEPKWKPLVLRQLWALQKNVV-IAYDD-NRRDPQFWPGVNQRWIGKD 269          
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Match: A0A1I5EX81_9PSED (Uncharacterized protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A1I5EX81_9PSED)

HSP 1 Score: 95.9 bits (237), Expect = 2.990e-18
Identity = 70/196 (35.71%), Postives = 107/196 (54.59%), Query Frame = 1
Query:    7 WMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLKAGVRVLDLRC----GYVGREAQKNDRVQDGIAVVHDKHRTSLSLRKALE--CVKGFVQ---AHPSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQQKGRVGILWNAVEAREPPFWPGVRQAW 567
            WM  Y SA A+L++ EM LPGTH+SG  K   P  + + T Q++   +QL+ G+RVLDLR     GY   +A++         + H     SL+ R+ +E  C++  +    A+ +E+V+LDFH+F      A H + A V+ + LG     +I PK+  L   ++ + QK  V I +N  + R+P FWPGV Q W
Sbjct:   89 WMGYYPSATASLRIDEMILPGTHNSGMDKQA-PYSNSYETCQDVSPHSQLQTGIRVLDLRVEFFFGYPVGDAKR-------FMIYH-----SLNSRRTIEGDCLQAAINLYTAYGNEVVILDFHQFKNFTDTA-HRELATVIKNRLGSR---LIEPKWNVLTLRQLWALQKNVV-IAYNHSQ-RDPLFWPGVNQRW 265          
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Match: G8Q0P0_PSEO1 (Uncharacterized protein n=3 Tax=Pseudomonas ogarae (strain DSM 112162 / CECT 30235 / F113) TaxID=1114970 RepID=G8Q0P0_PSEO1)

HSP 1 Score: 93.6 bits (231), Expect = 1.910e-17
Identity = 62/193 (32.12%), Postives = 95/193 (49.22%), Query Frame = 1
Query:    7 WMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLKAGVRVLDLRC----GYVGREAQKNDRVQDGIAVVHDKHRTSLSLRKALECVKGFVQAHPSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQQKGRVGILWNAVEAREPPFWPGVRQAWTG 573
            WM  Y  A ANL++ E+ LPGTH+SG+ K   P  + + T Q++    QL+ G+R LDLR     GY   + ++         + H            L+       A+P E+++LDFH F      A H + A V+ +  G +   +I PK++ L   ++ + QK  V I ++    R+P FWPGV Q W G
Sbjct:  181 WMGYYNGATANLRVDELVLPGTHNSGSDKQA-PYSNSYDTCQDVSPHTQLQTGIRALDLRVKFYWGYPAGDWRR-------FTIYHSLDSGRNVRGDILQAAMNLYNAYPQEVIILDFHEFRDFTDAA-HRELATVIKTTFGDK---LIEPKWKSLVLRQLWALQKNVV-IAYDD-NRRDPQFWPGVNQRWIG 359          
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Match: A0A4Q4L168_9PSED (Phospholipase n=1 Tax=Pseudomonas koreensis TaxID=198620 RepID=A0A4Q4L168_9PSED)

HSP 1 Score: 86.7 bits (213), Expect = 6.270e-16
Identity = 81/289 (28.03%), Postives = 136/289 (47.06%), Query Frame = 1
Query:    4 EWMKTYASALANLKLSEMSLPGTHDSGTA-KMHNPVVSP---WATTQNLGVLAQLKAGVRVLDLRCGYVGREAQKNDRVQDGIA---VVHDKHRTSLSLRKALECVKGFVQAHPSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRH-LPFGRI--MSQQKGRVGILWNAVEAREPPFWPGVRQAWTGAESVRSLHDLAE-----AELGDKNGLLWSLPLVLPAGVPRPVPHIPEHLDDWLSAG-GVWQDHASIVACDFVEETQLVRNCVGACLMKM 822
            EWM T   +L +L L +M+LPGTH++G+  +   P++ P   W   Q+     QL  G R LD+R  Y        ++  +G+A   + H+ HR S +L   +  V  F++ HP E ++LDFH   G      +     +++  LG    + I P+  H LP  ++  +S ++  V    +  +  E  F   +   WTG ES+ +  +L +      +    +   WSL     + +  PV  I + L+DW   G   W    +I+  DF+EE+++V  C  A L K+
Sbjct:    9 EWM-TATPSLDSLTLLQMALPGTHNAGSDWQASYPLLGPPRHWLACQHNTFFHQLHHGARALDIRLDY--------EQSAEGLAKFRLHHNGHRNSRTLGHLVTDVNDFLEKHPDEFIVLDFHALDGENFDFAYFNQ--MIIHFLG----MRIIPRSNHYLPIEQLKQISPRQCIVVAAQSHRDLNESVFIGKIDHEWTG-ESITNAQELHQFITQLLKKPSSSWEFWSLSATSYSALGGPV-DIHDQLNDWFDPGKSNWAQLCNIINVDFIEESRIVDFCRTANLNKV 280          
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Match: A0A7X1YB11_9PSED (Uncharacterized protein n=2 Tax=Pseudomonas helleri TaxID=1608996 RepID=A0A7X1YB11_9PSED)

HSP 1 Score: 84.3 bits (207), Expect = 4.940e-15
Identity = 81/281 (28.83%), Postives = 127/281 (45.20%), Query Frame = 1
Query:    7 WMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLKAGVRVLDLRCGYVGREAQ-KNDRVQDGIAVVHDKHRTSLSLRKALECVKGFVQAH------PSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQQKGRVGILWNAVEAREPPFWPGVRQAWTGAESVRSLHDL--------AEAELGDKNGLLWSLPLVLPAGVPRPVPHIPEHLDDWLSAGGV--WQDHASIVACDFVEETQLVRNC 798
            WM T    L +L +S++ LPG+HDSG+ K    +  P   TQ++    QL  G+R LDLR  +  + A  + +R Q         HRTS S R     + G +  +        E+V+LDFH F      A H +  A+++  L  +   +I   F +L  G I SQ  GR  ++      R   FW GV   W+G +++ S H+L        A+ +  D+   +     VLP  VP       + +D W  +     +  +  I+  D+   +QLV+NC
Sbjct:    7 WM-TQTPELQSLLISQLILPGSHDSGSDKEAPNLQLPQEITQDVSPKKQLLHGIRALDLRVAFYSKYAPGQPERFQLF-------HRTS-SGRNVANDILGMLLDYFEDPRAQQEIVVLDFHEFRDFNPQA-HAELKALIIDTLQSK---IIPYHFNNLKVGEIWSQHPGRNVVVAYNTSPRHALFWYGVNHHWSG-KNLLSTHELKIFMDSRIAKYKSNDELDSIQCAKYVLPFFVPD---DFSDTIDSWFLSENEHSYIQNFFIINTDWTTRSQLVKNC 270          
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Match: UPI001B31FF45 (hypothetical protein n=1 Tax=Pseudomonas sp. P42 TaxID=1080160 RepID=UPI001B31FF45)

HSP 1 Score: 84.0 bits (206), Expect = 5.850e-15
Identity = 77/282 (27.30%), Postives = 125/282 (44.33%), Query Frame = 1
Query:    7 WMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLKAGVRVLDLRCGYVGREAQKNDRVQDGIAVVHDKHRTSLSLRKALECVKGFVQAHPSELVLLDFHRFPGLGHG-APHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQQKGRVGILW---NAVEAREPPF-WPGVRQAWTGAESVRSLHDLAEAELGDKN----GLLWSLPLVLPA--GVPRPVPHIPEHLDDWLSAGGVWQDHASIVACDFVEETQLVRNCVGACLMK 819
            WM    S++ N KL ++SLPG H++G  +  +   + + T Q      QL  G+RVLD+R  Y    +  + R        HD  ++  SL   +  V  F+QA+PSE+V+LD H      +   P ++    ++   G     +I     ++    I +    R GI+    N +    P   WP +   W G   V +    +  E   +N    G LWS+     +  GV      I   L+ W S G  WQ  ++I+  DF  ++++VRNC+ + L K
Sbjct:   19 WMGDLRSSIGNKKLWQLSLPGAHNAGMDRKAS-YSNSYITCQGESFRYQLDNGIRVLDIRLKYFAGHSGTSLR----FVHTHDL-QSGRSLWDTMHEVYWFLQANPSEIVILDIHDLMTWNNSPVPFQELHDYLVGDFGW---ALIPRVAVNMTMNEIKANYP-RGGIILAAPNGLSRLNPTLIWPQINHRWAGGGLVSTSRLYSHIESVMRNPPAAGALWSMSATCYSIWGVQN----IKSELNGWYSIGSEWQRKSNIINVDFFNDSEIVRNCIESNLRK 286          
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Match: A0A5B0FCM1_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas sp. ANT_J12 TaxID=2597351 RepID=A0A5B0FCM1_9PSED)

HSP 1 Score: 82.8 bits (203), Expect = 1.510e-14
Identity = 78/286 (27.27%), Postives = 128/286 (44.76%), Query Frame = 1
Query:    7 WMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLKAGVRVLDLRCGYVGREAQKNDRVQDGIAVVHDKHR-TSLSLRKALECVKGFVQAHPSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQQKGRVGILWNAVEAREPPFWPGVRQAWTGAESVRS---LHDLAEAELGDKNGL-LWSLPLVLPAGVPRPVPHIPEHLDDWLSA--GGVWQDHASIVACDFVEETQLVRNCVGACLMKMARASAEG 843
            WM      L  L++ E+ LPGTHDSG  K  + +  P   TQ++    Q+KAG RVLDLR  ++  +A  ND  +  +   HD +R  S  +   L        +   EL++L+FH+F      A H++   ++   +G     +I P +R+     I  +  G+  ++        P +W GV+Q W G   V +      + E  L  K    L S+      G+  P     + +D+W  +     +     I+  D+   +++V+NCV A      RASA+G
Sbjct:   11 WMDN-TPGLYKLRIDELILPGTHDSGADKKASILNYPQEITQDVPASEQIKAGFRVLDLRVRFLPGKAA-NDPKRFQLYHWHDLNRFISTDILDMLNDFYDDSSSRAKELIILNFHQFDNFTDAA-HDELHLLINEKIGKR---LIPPSYRYSTIADIWKKIPGQTVVISYNKYTSYPDYWDGVQQQWMGENYVSTDKLKKFMDEVSLEPKRAYGLRSIQCAKYTGLFVP-DDFSDKIDEWFHSKDSNSYIQRFHIINTDWSTRSRIVQNCVHA---NQYRASAKG 286          
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Match: I4NAW1_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas sp. M47T1 TaxID=1179778 RepID=I4NAW1_9PSED)

HSP 1 Score: 82.0 bits (201), Expect = 6.400e-14
Identity = 80/280 (28.57%), Postives = 128/280 (45.71%), Query Frame = 1
Query:    4 EWMKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLKAGVRVLDLR----CGYVGREAQKNDRVQDGIA--VVHDKHRTSLSLRKALECVKGFVQAHPSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRHLPFGRIMSQQKGRVGILWNAVEAREPPFWPGVRQAWTGAESV--RSLHDLAEAELGDKNGL-----LWSLPLVLPAGVPRPVPHIPEHLDDWLSAG-GVWQDHASIVACDFVEETQLVRNCV 801
            +WM  Y   + +L++ +  LPGTH+S + K      S   T Q++  L QL+AG+RVLDLR     GY   + ++      G +   V D     L+  ++     GF  +   E+V+LDFH F G    A H + A ++   +G E   ++ P    +  G+I S+      I +N+ E R+  FW GV Q W G+ +    +L D   A   +K G      + +    LP  VP       + L  W ++G G    +  I+  D+    +LV NC+
Sbjct:   89 DWMNRY-DGVRSLRIQDCILPGTHNSASDKEAKRAPSN-ETCQDVSPLKQLRAGIRVLDLRVQFYAGYPANDPRRFSIFHQGNSGRTVRDDILGGLAHFRS---TPGFNTSR--EMVILDFHEFKGFNKAA-HLELAKLIKGSVGVER--LVTPSMATMTIGQIWSKGPANTVIAYNSGE-RDSSFWSGVNQRWIGSNTPTDNALRDFIAAVGREKKGATELKAVQAAKYALPGFVPNDKS---DKLMTWFASGEGKPILNHYIINTDWSLRQRLVDNCI 354          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9863.31686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBI9_9PHAE3.020e-20598.28PLCXc domain-containing protein n=2 Tax=Ectocarpus... [more]
UPI00106A8DB16.030e-2430.66uncharacterized protein LOC114520878 n=1 Tax=Dendr... [more]
UPI000D7982C51.630e-1834.38hypothetical protein n=2 Tax=Pseudomonadaceae TaxI... [more]
A0A1I5EX81_9PSED2.990e-1835.71Uncharacterized protein n=2 Tax=Pseudomonas TaxID=... [more]
G8Q0P0_PSEO11.910e-1732.12Uncharacterized protein n=3 Tax=Pseudomonas ogarae... [more]
A0A4Q4L168_9PSED6.270e-1628.03Phospholipase n=1 Tax=Pseudomonas koreensis TaxID=... [more]
A0A7X1YB11_9PSED4.940e-1528.83Uncharacterized protein n=2 Tax=Pseudomonas heller... [more]
UPI001B31FF455.850e-1527.30hypothetical protein n=1 Tax=Pseudomonas sp. P42 T... [more]
A0A5B0FCM1_9PSED1.510e-1427.27Uncharacterized protein n=1 Tax=Pseudomonas sp. AN... [more]
I4NAW1_9PSED6.400e-1428.57Uncharacterized protein n=1 Tax=Pseudomonas sp. M4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9863contigEcto-sp8_S_contig9863:2428..7073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score584.7
Seed ortholog evalue2.4e-164
Seed eggNOG ortholog2880.D8LR29
Model size958
KEGG rclassRC00017,RC00425
KEGG koko:K01771,ko:K06038
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons8
EggNOG free text desc.phosphoric diester hydrolase activity
EggNOG OGsKOG4306@1,KOG4306@2759
EC4.6.1.13,4.6.1.14
Cds size897
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9863.31686.1prot_Ecto-sp8_S_contig9863.31686.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9863 2480..7064 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145354.3065257-UTR-Ecto-sp8_S_contig9863:2427..24791681145354.3065257-UTR-Ecto-sp8_S_contig9863:2427..2479Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9863 2428..2479 -
1681145354.43337-UTR-Ecto-sp8_S_contig9863:7064..70731681145354.43337-UTR-Ecto-sp8_S_contig9863:7064..7073Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9863 7065..7073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145354.3241124-CDS-Ecto-sp8_S_contig9863:2479..24961681145354.3241124-CDS-Ecto-sp8_S_contig9863:2479..2496Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9863 2480..2496 -
1681145354.3437529-CDS-Ecto-sp8_S_contig9863:2755..29001681145354.3437529-CDS-Ecto-sp8_S_contig9863:2755..2900Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9863 2756..2900 -
1681145354.3556983-CDS-Ecto-sp8_S_contig9863:3646..37091681145354.3556983-CDS-Ecto-sp8_S_contig9863:3646..3709Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9863 3647..3709 -
1681145354.3672285-CDS-Ecto-sp8_S_contig9863:4018..41741681145354.3672285-CDS-Ecto-sp8_S_contig9863:4018..4174Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9863 4019..4174 -
1681145354.3790946-CDS-Ecto-sp8_S_contig9863:4872..50071681145354.3790946-CDS-Ecto-sp8_S_contig9863:4872..5007Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9863 4873..5007 -
1681145354.3916857-CDS-Ecto-sp8_S_contig9863:5288..53521681145354.3916857-CDS-Ecto-sp8_S_contig9863:5288..5352Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9863 5289..5352 -
1681145354.4054892-CDS-Ecto-sp8_S_contig9863:6143..63731681145354.4054892-CDS-Ecto-sp8_S_contig9863:6143..6373Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9863 6144..6373 -
1681145354.419783-CDS-Ecto-sp8_S_contig9863:6977..70641681145354.419783-CDS-Ecto-sp8_S_contig9863:6977..7064Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9863 6978..7064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9863.31686.1

>prot_Ecto-sp8_S_contig9863.31686.1 ID=prot_Ecto-sp8_S_contig9863.31686.1|Name=mRNA_Ecto-sp8_S_contig9863.31686.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=299bp
MKTYASALANLKLSEMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLK
AGVRVLDLRCGYVGREAQKNDRVQDGIAVVHDKHRTSLSLRKALECVKGF
VQAHPSELVLLDFHRFPGLGHGAPHEKAAAVVLSVLGGEEPVMIHPKFRH
LPFGRIMSQQKGRVGILWNAVEAREPPFWPGVRQAWTGAESVRSLHDLAE
AELGDKNGLLWSLPLVLPAGVPRPVPHIPEHLDDWLSAGGVWQDHASIVA
CDFVEETQLVRNCVGACLMKMARASAEGDAAAHAGGGKHGGGGDNGCV*
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mRNA from alignment at Ecto-sp8_S_contig9863:2428..7073-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9863.31686.1 ID=mRNA_Ecto-sp8_S_contig9863.31686.1|Name=mRNA_Ecto-sp8_S_contig9863.31686.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4646bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9863:2428..7073- (Ectocarpus species8 EcLAC_412)
ACGGAGTGGATGAAGACCTACGCCTCCGCTCTGGCTAACCTGAAGCTTTC GGAGATGAGCCTTCCGGGGACGCACGACTCCGGAACGGCTAAGATGGTGA GAGAAGATGGGGAGGTTCTGGTCGTCGTCGAGGTTTTTTTCCGAGAATGT TGTGATGGGTTGGTTTCGTCGTCGTTGTTGTCTTCGTCGTCTCGTTGCTG GTTGGTGTTGTTGGTGTTGAACGACGATGGCCATCGAAAGGCCTCCTGCG CACTCGCCGTGCTTTATGCACCAACAAGCGAGATCGCCGCGAGTACCCGT CACCTCGCCAACAACCACTTTCGAAGATGACCAACTTAACAGAATTAAGT TCACTGGATGACGCTACACCATGCGTGGTAAAGTTAGGAACCACCGCCGG CTAAGCACCCCGCCTGCAATCAATACCTGCTTCCCCGCCTCTTTTCCCCC GGCCGCCTCCGTCCTCCGCTGCTACTTTCTCTCGGTCTTGTCTTGTGTCC GATGGCCTACGTGTTTTCATTTTTGCAATAAAGCATGATATCCTGCAATA ATCTAATGCTGACACATCCTGCTTGTGTTCGATGGTCTACGCGTTGTTTC GTTTTATAACCCAACGCACCTACTAAGCATGCTGCTTGTGTCCCATGGCC TCCCTTCCTTGCTCCAAAAACACATATCCTGCACAACAACGCATGTGCAG CACAACCCGGTCGTGAGTCCCTGGGCCACGACCCAAAACCTCGGCGTTCT GGCCCAGCTCAAGGCCGGCGTCCGCGTCCTCGACCTCCGGTGCGGCTACG TGGGCCGAGAAGCCCAGAAGAACGACAGGGTGCAGGACGGCATCGCCGTG GTGCACGACAAGCACAGGACCTCTCTGAGCCTCCGGAAGGCGCTCGAGTG CGTCAAGGGCTTCGTCCAGGCGCACCCCAGGTAAGGTAACTTGCTTGTTC TTGAACGCGTGTTGTAGCTGATGTAAAAGGTATGACACACGGTGGTATTT TCAGGGATCGGAGCTTGCCTCGGTGTGAAGAGAGCGATGTCTTTTTTTGT TTCGTGTCTTTTGAAAAATTTCGACTCGTCCGTGTCCTCCGTGTGTATGT TTGTGTGCCGTGTTTGTCGAATCTGTGTTGTAGCTGTTTTCGTTCTGCAT TCTTGGTTTTGTGGTTTACCCCTGTTGCGTCCCTCCCGAAAACTTCGTTC AAGCAGCGCTTCTTCGGGCCTGTTTGGGTTTTCTGGTAGCTTCATGCAGA TCGCGGTCGCACCCAATGCCGCTTTGGGCATATGAATAGTAGGGATCACG CCGGGGGGGGGGGGAGAGAACGGGCCCACGCGCAAAGCAATATTGTACCA CGTTCTCGGTTCAGCACTTGTGTGCTGAGATGGGAAGTGCGCGACCTGTG CACCTGCTGCTGCGTATGCGTTCTTGCGCAATGCGCAAACGTTGTTGGGA CAAATAAAAAGTAGTAATCTGCAGCACTAACACCAATTGCCAATGTGGTG TCGGTCGGAGCCCTCCCGCCACACAGAATCCATGACTTCATGCTTCAAGT CATGCAGGCCTACCAGCTTTCGCTGCTGGCATAGCTGCTGTACGTTACAT TTTGGTGCTTCCGCTACTGTACGCAATTTCACTTTTTTTTTCACGAATGT GCCGCTGCTGGTGTTCTGCCCTTCGTCCGTCCGTCCATCCGCTCGTGCAT GTATGCCCGCCGGGGCAACAGTGAACTCGTTCTCCTGGACTTTCATCGTT TCCCGGGCCTAGGGCACGGCGCCCCGCACGAGAAGGTGCGATCAGGAAGG AGGCCGAAGGTGTTGCCGGGTACCACCAGCACCGCGGACAGACAGGCTGC GCCGTTTCGGAATACAACACACCAACAGCAGTAGCGGCTTTTCTACGTCC GCCGTTTCTAACACCCAAGAAAAAGAAGAAGAAGAAGAAGGAGCAGGATT ATACACAGCACTGCCTGCCTGTCTGTGGGCACCAACACGTCTGCTTATTC TTATCGCACACTTTTCTTTTTTTTCGAATGTCGCTTTTGGTGTGTGTTTT TTTGGCTCTGGCACAGGCGGCCGCGGTAGTGCTGAGCGTCCTCGGCGGGG AAGAGCCGGTGATGATCCACCCCAAGTTCCGCCACTTGCCCTTCGGGCGG ATCATGAGCCAGCAGAAGGGGAGGGTTGGCATCTTGTGGAACGCCGTTGA GGTGAGTGTGTGACACCGGTAACAATACCCCCCCCGAGACCCTGCCGCCG AGACGACGCCGCAGTAGCACTAGAAACGGGGTGAGCACTGAGAGGCCCTA ACCAGTCAAAACCCGCGTACTTTGGTTTTTTTCATTGCCACGGGGGCAGA AAGAACAGGATCGAAGATGGAAAAGAAAAGGCATGTATGATTGTGTCGGC CGAACTCGTGGATCTTCATCGCTGTTGTGTTTCGTTCCAAAGGGTTCAAT GTCTGTCGTGCTGCGCCGGCGTTGGGTGCAAGACAGAACACACGGCATGT ATGCTCGCTCTTGAGGACCTTGTTTTTTCCGCCAAAGAATACTCCGTCCC GGACATTACAGCCGTTTGTGTCTTTCGTGACCTAACTCACGATGCGAAGA CGCGTACAACTAGCAACAAGAGGCGTGAAGGCAAAAAGCCACCACCCTAC AAGGATTGGCATCATGGAAACCCGCCTCCATCCCGCCCTGTTGGTAGTCG CCGTCATTGTCATCGCAACCGCAGCCGCCACTACAAAAAACATGAGTCTA TGGAAGGAACATCTGCTGTTTTTTTTTTTTTTTCACCCTCTTCCGTTCCA AACGGCACGCACGGCTGTATGTATCGACCAATACGCCCTTCCCGCCAAAA CCGCCGACCGTGTGGCTGCCCGACGCGTCGTGTGCGTATGGAACAACAGG CGAGGGAGCCGCCCTTCTGGCCGGGCGTGAGGCAGGCCTGGACCGGGGCG GAGAGCGTTCGGTCCCTCCACGACTTGGCGGAGGCTGAGCTCGGCGACAA GAACGGGCTGCTTTGGTCGCTGCCGCTGGTCCTGCCGGCGGGGGTGCCCC GGCCGGTGCGTCCTTCTTTTTTTTTTCTGAGGCGGTGTTTGTCGTGGTAG GGGTTCTCACGGAAGTTGTGAGATGTTTGTTGCAGGAGTTCCTCGCTACT GTATTGAGCTGCTTGGTGTTGTTGTTGTTGTTGTTGTCTTGCGCGACATT CTATCCGAGCATGTTGTTTCCTCTTTCGCTTCGCTGTTGTGGTTTTCGAA CTCATCCCACGCCGCCGTTTCGCAAGAAGCGCGAGCACATGCCTAAGATC CCCCCGACATGCACAATATCTCACGCTGTCCCCCTTCGGCCACCCCTGCC TGCTTTCGAAATAGGTGCCCCACATCCCAGAACACTTGGACGACTGGCTT TCTGCTGGCGGGGTGTGGCAAGACCACGTGAGTGCCTCTGTACGTGTCTC ATGCCATGAACGAGGGCGCTAGACCGACTAAATACAAGTATTGGTTGGCA TGCTGAAGACAACGAAGAAGTGGTGTGAGACGTTTCGCCGTTTTGGAGAG ATGGACGATTCGAGGTGTATGTCTCGTTTGTCGCGCTCTGGCCGTTTGAA GTGCATCTGTATCAACGGCGACGGTGGTGGTGGTGGTGGTGGTAGTGTAC CTGGTGTTGGGAGCAGGTACGAGGCTTTCTCTGCGCCTGCGTTTGTTGTG GAATGGTGCTGACCGCGGTGCTCTTTACGCCGCCGGCGATTCAGTGCAGG CTATGGTGTGCTGGACTTTTAATGGTGTGGGTTGTGGTCGGTGGGTGGCG GCTCAGCAAGCCTCCCTAAGGGCAAGCCCTTCAATTCCCTGATCTAGACT CTCGTTGATGTGCATGTTGTATGCGATGCATCACGCCAGGTCGTGCCCTG ATGTTTTTCTTCTGGACCCCCAATATACCACCAAGACTCCCTGGCAAGGA GGGAAAAAACGCCACAACGTCGTCGAGTTGTACATGATATAGCGTGCACC CGTACTCCCCTCGGTACTGCGGTTTCACGGGACCCCGCCTGTGTCCCTCG TAGCCAGCTCGCCCGGCGCACACCATGACGCAGCGGCGGTCGACTTGTTC GCCAAGCTGATCTCTGTCCCTCCCGCCTGAAATCGTTTCTTTCTTTTTTT TCCCCTTGTTTCTTGGGCGTCAGGCGAGCATCGTTGCGTGCGACTTCGTC GAGGAAACGCAGCTCGTTCGCAACTGCGTGGGCGCATGTCTCATGAAGAT GGCCAGGGCTAGTGCTGAAGGCGACGCGGCCGCCCACGCCGGGGGCGGCA AGCATGGCGGCGGCGGCGGTAAGCATGGCGGCGGGAAGCATGGTGGCGGC GGCGGTGGCGGTAAGCATGGCGGCGGTGGCGGTAAGCATGGCGGCGGCGG TGGCGGCAAGCACGGCGGCGGCAAACAAGGCGGGGGCGGGGGCGGGGGCG GTGGCGGCGGCGGTGGCGGTGGCGGTGGCGGCGGCGGTGGCGGTCACAAG AAGCAAGGTGGCGGCGGCAAGAAGTGAAGTGCCGCCGCATAACGCAACCC CCGAGATACGGTGGTTGTCGTTCCAAGACAACGGCTGCGTGTGAAAATAC GACCCCCGCAAGACGTGATGCATGCCGCACGCATCCGGCTGCCATC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9863:2428..7073-

>mRNA_Ecto-sp8_S_contig9863.31686.1 ID=mRNA_Ecto-sp8_S_contig9863.31686.1|Name=mRNA_Ecto-sp8_S_contig9863.31686.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=897bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9863:2428..7073- (Ectocarpus species8 EcLAC_412)
ATGAAGACCTACGCCTCCGCTCTGGCTAACCTGAAGCTTTCGGAGATGAG
CCTTCCGGGGACGCACGACTCCGGAACGGCTAAGATGCACAACCCGGTCG
TGAGTCCCTGGGCCACGACCCAAAACCTCGGCGTTCTGGCCCAGCTCAAG
GCCGGCGTCCGCGTCCTCGACCTCCGGTGCGGCTACGTGGGCCGAGAAGC
CCAGAAGAACGACAGGGTGCAGGACGGCATCGCCGTGGTGCACGACAAGC
ACAGGACCTCTCTGAGCCTCCGGAAGGCGCTCGAGTGCGTCAAGGGCTTC
GTCCAGGCGCACCCCAGTGAACTCGTTCTCCTGGACTTTCATCGTTTCCC
GGGCCTAGGGCACGGCGCCCCGCACGAGAAGGCGGCCGCGGTAGTGCTGA
GCGTCCTCGGCGGGGAAGAGCCGGTGATGATCCACCCCAAGTTCCGCCAC
TTGCCCTTCGGGCGGATCATGAGCCAGCAGAAGGGGAGGGTTGGCATCTT
GTGGAACGCCGTTGAGGCGAGGGAGCCGCCCTTCTGGCCGGGCGTGAGGC
AGGCCTGGACCGGGGCGGAGAGCGTTCGGTCCCTCCACGACTTGGCGGAG
GCTGAGCTCGGCGACAAGAACGGGCTGCTTTGGTCGCTGCCGCTGGTCCT
GCCGGCGGGGGTGCCCCGGCCGGTGCCCCACATCCCAGAACACTTGGACG
ACTGGCTTTCTGCTGGCGGGGTGTGGCAAGACCACGCGAGCATCGTTGCG
TGCGACTTCGTCGAGGAAACGCAGCTCGTTCGCAACTGCGTGGGCGCATG
TCTCATGAAGATGGCCAGGGCTAGTGCTGAAGGCGACGCGGCCGCCCACG
CCGGGGGCGGCAAGCATGGCGGCGGCGGCGACAACGGCTGCGTGTGA
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