mRNA_Ecto-sp8_S_contig98480.31664.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98480.31664.1
Unique NamemRNA_Ecto-sp8_S_contig98480.31664.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: UPI000C767CAC (26S proteasome non-ATPase regulatory subunit 10-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C767CAC)

HSP 1 Score: 76.6 bits (187), Expect = 6.350e-14
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   19 TVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTKEAD 195
            ++HELAL+GD ++V++  Q KP  +   D+SGR+PLHWAVSKGH E+  W LD  K+A+
Sbjct:   17 SIHELALEGDFQAVKQKIQLKPELVTKTDESGRIPLHWAVSKGHKEMVGWLLDLNKDAN 75          
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A7R8X2X0_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X2X0_9CRUS)

HSP 1 Score: 62.0 bits (149), Expect = 3.870e-8
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    7 VSKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTKEADTP 201
            +S   +  LA +G I +V+E  ++ P  ++ KD +GRLP+HWA S GHTE+A++ L+     D P
Sbjct:  178 MSDTEIGRLAYEGQIAAVKENIKATPSLVKRKDSAGRLPIHWAASGGHTEIASFLLENGSPVDPP 242          
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A1D2MJG5_ORCCI (26S proteasome non-ATPase regulatory subunit 10 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MJG5_ORCCI)

HSP 1 Score: 60.1 bits (144), Expect = 9.590e-8
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   19 TVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFL 174
            TVH+L L GD+   Q+L Q+    +++KD+SGR+P+HWA S G TEL    L
Sbjct:   20 TVHQLILSGDVVGAQQLLQNNQNLVKSKDESGRIPIHWACSMGFTELTELLL 71          
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A2V1CBP1_9HELO (Ankyrin n=1 Tax=Cadophora sp. DSE1049 TaxID=1485229 RepID=A0A2V1CBP1_9HELO)

HSP 1 Score: 56.6 bits (135), Expect = 2.700e-7
Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = 1
Query:   10 SKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTKEAD 195
            SK  +HE A DG  + V+ L  + P   Q  DD GRLPLHWAVS  H ++A   L  TK+ D
Sbjct:    7 SKFAIHEAARDGRTQVVESLLAANPKLAQRVDDDGRLPLHWAVSYNHLDIAK-LLASTKDFD 67          
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A1E1JVL5_9HELO (Related to 26s proteasome subunit p28 n=5 Tax=Helotiales TaxID=5178 RepID=A0A1E1JVL5_9HELO)

HSP 1 Score: 57.8 bits (138), Expect = 6.240e-7
Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 1
Query:   10 SKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTKEAD 195
            SK  +HE A DG  + V+ L  + P   Q  DD GRLPLHWAVS  H E+A   L  TK+ D
Sbjct:    7 SKFAIHEAARDGRTQIVESLLAANPKLAQRVDDDGRLPLHWAVSYNHLEIAK-LLANTKDFD 67          
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A2J6Q9K8_9HELO (Ankyrin n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6Q9K8_9HELO)

HSP 1 Score: 54.3 bits (129), Expect = 7.230e-6
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1
Query:   10 SKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELA 162
            SK  +HE A DG    V+ L  + P   + KDD  RLP+HWAVS GH ++A
Sbjct:    5 SKFAIHEAARDGRTAVVESLLNANPKLAEKKDDDERLPIHWAVSYGHLDIA 55          
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A2J6SXZ4_9HELO (Ankyrin n=2 Tax=Hyaloscypha hepaticicola/Rhizoscyphus ericae species complex TaxID=186449 RepID=A0A2J6SXZ4_9HELO)

HSP 1 Score: 53.9 bits (128), Expect = 1.460e-5
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1
Query:   10 SKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELA 162
            SK  +HE A DG    V+ L  + P   + KDD  RLP+HWAVS GH ++A
Sbjct:    5 SKFAIHEAARDGRTAVVESLLAANPKLAEKKDDDERLPIHWAVSYGHLDIA 55          
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A1L7X7X7_9HELO (Related to 26s proteasome subunit p28 n=1 Tax=Phialocephala subalpina TaxID=576137 RepID=A0A1L7X7X7_9HELO)

HSP 1 Score: 53.9 bits (128), Expect = 1.610e-5
Identity = 27/62 (43.55%), Postives = 35/62 (56.45%), Query Frame = 1
Query:   10 SKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTKEAD 195
            SK  +HE A DG    V+ L  + P   + +DD  RLP+HWAVS GH ++A   L  TK  D
Sbjct:    7 SKFAIHEAARDGRTSVVESLLAANPKLAERRDDDERLPIHWAVSYGHLDIAI-LLANTKNFD 67          
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A183IB60_9BILA (ANK_REP_REGION domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IB60_9BILA)

HSP 1 Score: 53.5 bits (127), Expect = 2.070e-5
Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query:    7 VSKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLDQTK 186
            +S   +  LA +G  + V+EL +        KD+SGR+PLHWA S GH+E+  +  D +K
Sbjct:   10 MSNSEICSLAYEGKGKEVKELIKKDSSLASAKDESGRIPLHWACSAGHSEIVQFLFDYSK 69          
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Match: A0A6P7S740_OCTVU (26S proteasome non-ATPase regulatory subunit 10 n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7S740_OCTVU)

HSP 1 Score: 53.1 bits (126), Expect = 2.500e-5
Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   28 ELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGHTELAAWFLD 177
            +  ++G+   ++++ +   G +   D+SGRLPLHWAVS+GH+E+A + LD
Sbjct:    8 DYVMNGNFTELKKILEENKGLLLKVDESGRLPLHWAVSQGHSEIADYLLD 57          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98480.31664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
UPI000C767CAC6.350e-1452.5426S proteasome non-ATPase regulatory subunit 10-li... [more]
A0A7R8X2X0_9CRUS3.870e-840.00Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A1D2MJG5_ORCCI9.590e-848.0826S proteasome non-ATPase regulatory subunit 10 n=... [more]
A0A2V1CBP1_9HELO2.700e-746.77Ankyrin n=1 Tax=Cadophora sp. DSE1049 TaxID=148522... [more]
A0A1E1JVL5_9HELO6.240e-748.39Related to 26s proteasome subunit p28 n=5 Tax=Helo... [more]
A0A2J6Q9K8_9HELO7.230e-647.06Ankyrin n=1 Tax=Hyaloscypha hepaticicola TaxID=208... [more]
A0A2J6SXZ4_9HELO1.460e-547.06Ankyrin n=2 Tax=Hyaloscypha hepaticicola/Rhizoscyp... [more]
A0A1L7X7X7_9HELO1.610e-543.55Related to 26s proteasome subunit p28 n=1 Tax=Phia... [more]
A0A183IB60_9BILA2.070e-538.33ANK_REP_REGION domain-containing protein n=1 Tax=S... [more]
A0A6P7S740_OCTVU2.500e-540.0026S proteasome non-ATPase regulatory subunit 10 n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98480contigEcto-sp8_S_contig98480:44..562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size519
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145352.6054807-CDS-Ecto-sp8_S_contig98480:43..5621681145352.6054807-CDS-Ecto-sp8_S_contig98480:43..562Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98480 44..562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98480.31664.1prot_Ecto-sp8_S_contig98480.31664.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98480 44..562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98480.31664.1

>prot_Ecto-sp8_S_contig98480.31664.1 ID=prot_Ecto-sp8_S_contig98480.31664.1|Name=mRNA_Ecto-sp8_S_contig98480.31664.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=173bp
MLVSKRTVHELALDGDIRSVQELAQSKPGCIQTKDDSGRLPLHWAVSKGH
TELAAWFLDQTKEADTPDESGWTPLIIAASAGHSDLLKLLLDNGAEVNRT
TDQGRTALLYAASKGRTELVAELINKGADVNKSDQLGATPLHRASGPGHA
DVVRVLLAADNTIVDCQDRYGNT
back to top

mRNA from alignment at Ecto-sp8_S_contig98480:44..562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98480.31664.1 ID=mRNA_Ecto-sp8_S_contig98480.31664.1|Name=mRNA_Ecto-sp8_S_contig98480.31664.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98480:44..562+ (Ectocarpus species8 EcLAC_412)
ATGCTTGTAAGCAAGAGAACTGTGCACGAGCTTGCTCTTGATGGAGATAT CAGATCAGTTCAGGAGCTGGCCCAGTCCAAGCCTGGCTGCATTCAGACCA AAGACGACAGTGGAAGACTTCCTCTACACTGGGCCGTGTCTAAAGGCCAC ACAGAGCTGGCTGCCTGGTTCCTTGACCAGACCAAGGAAGCTGACACTCC CGACGAGTCAGGCTGGACCCCTCTAATCATAGCAGCTTCTGCTGGCCACA GTGACCTGTTAAAGCTGTTGCTGGACAATGGCGCCGAGGTGAACAGAACC ACAGACCAGGGCAGGACAGCCCTGCTGTACGCTGCCAGCAAGGGGAGGAC GGAGTTGGTGGCTGAGCTCATCAACAAGGGGGCTGATGTCAATAAGTCAG ACCAGTTAGGGGCTACACCTCTTCATAGAGCTTCTGGACCTGGGCATGCT GACGTGGTGAGGGTTCTCTTGGCCGCTGACAACACCATCGTGGACTGCCA GGACAGGTACGGGAACACA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98480:44..562+

>mRNA_Ecto-sp8_S_contig98480.31664.1 ID=mRNA_Ecto-sp8_S_contig98480.31664.1|Name=mRNA_Ecto-sp8_S_contig98480.31664.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98480:44..562+ (Ectocarpus species8 EcLAC_412)
ATGCTTGTAAGCAAGAGAACTGTGCACGAGCTTGCTCTTGATGGAGATAT
CAGATCAGTTCAGGAGCTGGCCCAGTCCAAGCCTGGCTGCATTCAGACCA
AAGACGACAGTGGAAGACTTCCTCTACACTGGGCCGTGTCTAAAGGCCAC
ACAGAGCTGGCTGCCTGGTTCCTTGACCAGACCAAGGAAGCTGACACTCC
CGACGAGTCAGGCTGGACCCCTCTAATCATAGCAGCTTCTGCTGGCCACA
GTGACCTGTTAAAGCTGTTGCTGGACAATGGCGCCGAGGTGAACAGAACC
ACAGACCAGGGCAGGACAGCCCTGCTGTACGCTGCCAGCAAGGGGAGGAC
GGAGTTGGTGGCTGAGCTCATCAACAAGGGGGCTGATGTCAATAAGTCAG
ACCAGTTAGGGGCTACACCTCTTCATAGAGCTTCTGGACCTGGGCATGCT
GACGTGGTGAGGGTTCTCTTGGCCGCTGACAACACCATCGTGGACTGCCA
GGACAGGTACGGGAACACA
back to top