mRNA_Ecto-sp8_S_contig9846.31661.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9846.31661.1
Unique NamemRNA_Ecto-sp8_S_contig9846.31661.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 1.160e-137
Identity = 198/220 (90.00%), Postives = 208/220 (94.55%), Query Frame = 1 
Query:   55 MVASQMFLGTAATLIASSTAFVAPMAVRSVATTPSSSSLKMSVGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 714
            MVA+Q+FLG+AATLIASSTAFVAPMAVRS A   SSS+LKMS GSDYVATLPGAPF DGKIFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGV+VAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 386 bits (991), Expect = 2.110e-134
Identity = 197/219 (89.95%), Postives = 206/219 (94.06%), Query Frame = 1 
Query:   55 MVASQMFLGTAATLIASSTAFVAPMAVRSVATTPSSSSLKMSVGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 711
            MVASQMFLGTAA LIASSTAFVAP+AVRS A   ++S+LKMS GSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.850e-125
Identity = 184/220 (83.64%), Postives = 198/220 (90.00%), Query Frame = 1 
Query:   55 MVASQMFLGTAATLIASSTAFVAPMAVRSVATTPSSSSLKMSVGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 714
            + +S MFLGTAATLIASSTAFVAPMAVRS A   S+S+LKMS GSDYVATLPGAPF DGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++GVIVAEQYHP FMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:    2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 1.360e-118
Identity = 186/220 (84.55%), Postives = 188/220 (85.45%), Query Frame = 1 
Query:   55 MVASQMFLGTAATLIASSTAFVAPMAVRSVATTPSSSSLKMSVGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 714
            MVASQMF+GTAATLIASSTAFVAPMAVRSV TTPSS  LKMS GSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 1.550e-116
Identity = 215/392 (54.85%), Postives = 218/392 (55.61%), Query Frame = 1 
Query:   55 MVASQMFLGTAATLIASSTAFVAPMAVRSVA-TTPSSSSLKMSVGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 714
            MVASQMF+GTAATLIASSTAFVAP+AVRSVA TTPSSSSL MS GSDYVATLPGAPFSDGK                                                                                                                                                                           IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 1.110e-111
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 1 
Query:  232 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 714
            +IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 1.610e-109
Identity = 164/218 (75.23%), Postives = 187/218 (85.78%), Query Frame = 1 
Query:   61 ASQMFLGTAATLIASSTAFVAPMAVRSVATTPSSSSLKMSVGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 714
            +S MFLGTAATLIASS AFV PMAVRS A   S+S+LKMS G+DY+ATLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++GV+VAEQYHPFFMGPDYIGPAVDHFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDP  +KP D+A L+ M+ KELNNGRLAMIGI GML QELVN  DILG
Sbjct:    4 SSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 6.980e-90
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 1 
Query:  232 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 711
            KIFDPLGL+DGA  GDIK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISA+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVNP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 2.260e-88
Identity = 133/213 (62.44%), Postives = 168/213 (78.87%), Query Frame = 1 
Query:   76 LGTAATLIASSTAFVAPMAVRSVATTPSSSSLKMSVGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 714
            +G A+   AS  AF+ P    +++  P+S++ +MS GSDYV+TLPGAPF+DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE +HP F+GPDYIGPA+ HF+EI+A+FP+FWA +LL +A++EY  I   F     VTGEGG++ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGI GM+ QELV P  I G
Sbjct:   60 VGMASWCFASCEAFIVPTPT-TLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 3.180e-86
Identity = 150/220 (68.18%), Postives = 154/220 (70.00%), Query Frame = 1 
Query:   55 MVASQMFLGTAATLIASSTAFVAPMAVRSVATTPSSSSLKMSVGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 714
            MVASQMF+GTAATLIASSTAFV PMA+RSVA+TPSSS  KMS GSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE                                                              EDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE--------------------------------------------------------------EDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9846.31661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI1.160e-13790.00Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI2.110e-13489.95Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI1.850e-12583.64Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE1.360e-11884.55LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5JWB4_9PHAE1.550e-11654.85LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7S5_ECTSI1.110e-11198.76Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI1.610e-10975.23Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI6.980e-9081.25Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI2.260e-8862.44Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JYI8_9PHAE3.180e-8668.18LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9846contigEcto-sp8_S_contig9846:3144..5111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score429.1
Seed ortholog evalue1.4e-117
Seed eggNOG ortholog2880.D7G7S2
Model size719
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
Cds size717
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145352.3882792-CDS-Ecto-sp8_S_contig9846:3143..34191681145352.3882792-CDS-Ecto-sp8_S_contig9846:3143..3419Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9846 3144..3419 -
1681145352.4037933-CDS-Ecto-sp8_S_contig9846:3994..40781681145352.4037933-CDS-Ecto-sp8_S_contig9846:3994..4078Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9846 3995..4078 -
1681145352.418981-CDS-Ecto-sp8_S_contig9846:4274..43971681145352.418981-CDS-Ecto-sp8_S_contig9846:4274..4397Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9846 4275..4397 -
1681145352.432478-CDS-Ecto-sp8_S_contig9846:4877..51111681145352.432478-CDS-Ecto-sp8_S_contig9846:4877..5111Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9846 4878..5111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9846.31661.1prot_Ecto-sp8_S_contig9846.31661.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9846 3144..5111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9846.31661.1

>prot_Ecto-sp8_S_contig9846.31661.1 ID=prot_Ecto-sp8_S_contig9846.31661.1|Name=mRNA_Ecto-sp8_S_contig9846.31661.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=239bp
SSQLPTPHLQHKLHIPSKMVASQMFLGTAATLIASSTAFVAPMAVRSVAT
TPSSSSLKMSVGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREA
EIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWA
FSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDD
EAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG*
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mRNA from alignment at Ecto-sp8_S_contig9846:3144..5111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9846.31661.1 ID=mRNA_Ecto-sp8_S_contig9846.31661.1|Name=mRNA_Ecto-sp8_S_contig9846.31661.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1968bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9846:3144..5111- (Ectocarpus species8 EcLAC_412)
TCATCCCAACTTCCAACACCCCATCTCCAACACAAACTCCACATACCAAG
CAAGATGGTCGCCTCCCAGATGTTCCTCGGCACTGCCGCCACCCTCATCG
CCTCCTCGACTGCCTTCGTGGCACCGATGGCTGTGCGATCTGTTGCCACC
ACTCCTTCGTCCTCTAGCCTCAAGATGAGTGTCGGATCGGACTACGTCGC
CACCCTGCCCGGAGCTCCCTTCTCTGACGGAAAGGTGAGCGCACACCCGC
GGTGGAGTGCTACGTACAACCATGTAGACTACGTTGTACAGCAGTACCCT
CAGGACGCTATCTCTTGTATCCGTGGTTCGAAGGATCGCTCGATCTGTTG
TAAGAACACACCAGTATTTCGTGGACGTGCACGTACCAAATGAACATGCA
GTGGTATGATCTACATCAATGACATCGACAAAGAAGGCGCGTATCACGTC
AAGGATGTTGTCGTGTGTCGTCTGTACAGCAGTAGTCATGTGGAACCACA
CCTGGGCGTACACACACTCATTAGTTGCCATTCCCCCATCCAAGGTATCA
CACTACACAAGGTATATCATCTCCACATAAACGGAGAGACTGAATCGACA
GATCAATCGTTCGCGGTGCTATTTCTCTGCGTCTGTGAGGTTCTACCCTG
ACTGCCTTGGCTCAACCGTTGCGGTCTTTGATCACCACTGCTGCCCAACG
CTCTCGTGCCTCAGATCTTCGACCCCCTGGGCCTATCCGACGGCGCTGCC
CCCGGCGACATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGGCGTGT
GGCCATGCTTGCGTCTCTTGGTGTCATCGTCGCAGAGGTGAGGCAAAGCA
TACATGATGGCACACGATGAATACATGCCTTCGGAAAGGGTGACGTGTTG
TTGTAATGTTTTCCAAGGATACAACAAACACTGTTGTAGACAGAGACAGC
TTAGTTTTGGGCGTTGCTCATGTTTTTCGTCCCGCCGCATCCCGTTGTGC
TCGCTCTCGTCCTGTTGCCGTTGCCCACTCCAGCAATACCACCCGTTCTT
CATGGGACCCGACTACATTGGCCCCGCTGTGGACCACTTCCAGGAGATCA
GCGCGCAATTCCCTGAGGTGAGAAATGGATGTTCGGGAAAACACATGTTG
CTTTAGACTACATGACGTGTGAGGCAATCGAAAAGTTTGATAAATGCGTA
TCAAGTGGTGTTATTTCTGCGACTCGGGTTAAACACGCAATTCACTTGTA
CACCAACCATTGCTGGAGAAGGTATACACACGGAGTATGTGATTCCAGCA
ACGAATTTCCTTCCCTCCCCTTCCAACACCGAAAACGAGTCGTACATTTC
GGAGCGGCATGACCTCACCAGAGCAAGACACCATCTGCACACTTTGAAAT
AAGATTTATGGAGTTGTTCCTAGTGATGTGGTGCCCCCGTGCTGGTATCA
GTTGGTTGACCAGTCAGATGTAGGTTGCGCTAAGGCTTTCGCAGGTTGTC
CGACTCATCAAGTGCCCTTCTTGCGCATTACCTACTCGAGTGTTGTTTCT
CGTGACACGACGTGGATGCTGTACTGTCAACGATGCCACCCTTCCCTCGA
CACCATGTGGTCGACGAGTGCTGTTTGTTCACACACACGAATTCCCTCTC
TGTGTCTCTCTGCCCGTCATTCCCGTGTCTCCCAAACCTCAGTTCTGGGC
GTTCTCCCTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACCG
CCTTCGACACCCCCAGCGCTGTCACCGGCGAGGGCGGCCTGAAGGAGGAC
TACATCCCGGGAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGACGA
CGAGGCGGCTCTGGACGTGATGAAGACCAAGGAGCTGAACAACGGTCGTT
TGGCCATGATCGGTATCGCCGGCATGTTGGCGCAGGAGCTGGTCAACCCG
GCCGACATCCTCGGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9846:3144..5111-

>mRNA_Ecto-sp8_S_contig9846.31661.1 ID=mRNA_Ecto-sp8_S_contig9846.31661.1|Name=mRNA_Ecto-sp8_S_contig9846.31661.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9846:3144..5111- (Ectocarpus species8 EcLAC_412)
TCATCCCAACTTCCAACACCCCATCTCCAACACAAACTCCACATACCAAG
CAAGATGGTCGCCTCCCAGATGTTCCTCGGCACTGCCGCCACCCTCATCG
CCTCCTCGACTGCCTTCGTGGCACCGATGGCTGTGCGATCTGTTGCCACC
ACTCCTTCGTCCTCTAGCCTCAAGATGAGTGTCGGATCGGACTACGTCGC
CACCCTGCCCGGAGCTCCCTTCTCTGACGGAAAGATCTTCGACCCCCTGG
GCCTATCCGACGGCGCTGCCCCCGGCGACATCAAGAAGTGGCGCGAGGCC
GAGATCAAGCACGGGCGTGTGGCCATGCTTGCGTCTCTTGGTGTCATCGT
CGCAGAGCAATACCACCCGTTCTTCATGGGACCCGACTACATTGGCCCCG
CTGTGGACCACTTCCAGGAGATCAGCGCGCAATTCCCTGAGTTCTGGGCG
TTCTCCCTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACCGC
CTTCGACACCCCCAGCGCTGTCACCGGCGAGGGCGGCCTGAAGGAGGACT
ACATCCCGGGAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGACGAC
GAGGCGGCTCTGGACGTGATGAAGACCAAGGAGCTGAACAACGGTCGTTT
GGCCATGATCGGTATCGCCGGCATGTTGGCGCAGGAGCTGGTCAACCCGG
CCGACATCCTCGGCTAA
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