mRNA_Ecto-sp8_S_contig98437.31654.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98437.31654.1
Unique NamemRNA_Ecto-sp8_S_contig98437.31654.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Match: A0A6H5L5Y9_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5Y9_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 9.630e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAEL 258
            LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAEL
Sbjct:  115 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAEL 200
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BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Match: A0A6J3S657_TURTR (cyclin-dependent kinase 2 isoform X3 n=7 Tax=Boreoeutheria TaxID=1437010 RepID=A0A6J3S657_TURTR)

HSP 1 Score: 142 bits (357), Expect = 9.250e-41
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAELRC 264
            LL  + FCHS+R+LHRDLKPQN+LI+AEG +KLADFGLAR F V  R YTHEVVTLWYR PEILLG  YY T+ DIWS+GCI AE++C
Sbjct:  111 LLQGLAFCHSHRVLHRDLKPQNLLINAEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMKC 198
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BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Match: A0A7K7LGS5_9AVES (CDK2 kinase (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7K7LGS5_9AVES)

HSP 1 Score: 138 bits (347), Expect = 1.370e-40
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAELRCG 267
            LL  + FCH++R+LHRDLKPQN+LI+A+G +KLADFGLAR F V  R YTHEVVTLWYRPPEILLG  YY T+ DIWS+GCI AE+  G
Sbjct:   10 LLQGLAFCHAHRVLHRDLKPQNLLINADGAIKLADFGLARAFGVPLRTYTHEVVTLWYRPPEILLGCKYYSTAVDIWSLGCIFAEMVRG 98
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BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Match: A0A7K7DQL7_PHEME (CDK2 kinase (Fragment) n=1 Tax=Pheucticus melanocephalus TaxID=371919 RepID=A0A7K7DQL7_PHEME)

HSP 1 Score: 137 bits (345), Expect = 2.380e-40
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAEL 258
            LL  + FCH++R+LHRDLKPQN+LI+AEG++KLADFGLAR F V  R YTHEVVTLWYR PEILLG  YY T+ DIWS+GCI AE+
Sbjct:    7 LLQGLAFCHAHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEM 92
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BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Match: UPI000C6DBC40 (cyclin-dependent kinase 2-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DBC40)

HSP 1 Score: 142 bits (357), Expect = 4.230e-40
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAELRCGQAAGP 282
            LL  + +CHS+R+LHRDLKPQN+LID EGN+KLADFGLAR F V  R YTHEVVTLWYR PEILLG+ +Y TS D+WS+GCI AE+   +A  P
Sbjct:   76 LLQGIAYCHSHRVLHRDLKPQNLLIDIEGNIKLADFGLARAFGVPLRSYTHEVVTLWYRAPEILLGTKFYSTSVDVWSIGCIFAEMLTRRALFP 169
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BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Match: A0A2T3ALZ4_9PEZI (Kinase-like domain-containing protein n=4 Tax=Diaporthales TaxID=5114 RepID=A0A2T3ALZ4_9PEZI)

HSP 1 Score: 142 bits (359), Expect = 8.500e-40
Identity = 67/94 (71.28%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    1 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAELRCGQAAGP 282
            L H VRFCHS+R+LHRDLKPQN+LID EGNLKLADFGLAR F V  R YTHEVVTLWYR PEILLG   Y T  D+WSVGCI AE+   +A  P
Sbjct:  132 LCHGVRFCHSHRVLHRDLKPQNLLIDKEGNLKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGGRQYSTGVDMWSVGCIFAEMCTRKALFP 225
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BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Match: A0A0K8VMC2_BACLA (Cell division control protein 2 cognate n=15 Tax=Tephritidae TaxID=7211 RepID=A0A0K8VMC2_BACLA)

HSP 1 Score: 142 bits (357), Expect = 1.170e-39
Identity = 63/86 (73.26%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAEL 258
            LL A+ FCH+NRILHRDLKPQN+L+D EGN+KLADFGLAR F +  R YTHEVVTLWYR PEILLG+ YY T  DIWS+GCI AE+
Sbjct:  113 LLDAICFCHTNRILHRDLKPQNLLVDTEGNIKLADFGLARAFNMPMRAYTHEVVTLWYRAPEILLGTKYYATGMDIWSLGCIFAEM 198
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BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Match: A0A6P4Y4F1_BRABE (cyclin-dependent kinase 2-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Y4F1_BRABE)

HSP 1 Score: 141 bits (356), Expect = 1.530e-39
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAELRCGQAAGP 282
            +L  + +CHS+R+LHRDLKPQN+LIDAEGN+KLADFGLAR F V  R YTHEVVTLWYR PEILLGS +Y T  D+WS+GCI AE+   +A  P
Sbjct:  111 ILKGIAYCHSHRVLHRDLKPQNLLIDAEGNIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSKFYSTPVDVWSIGCIFAEMITRRALFP 204
[Close]
BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Match: UPI0009A424CC (cyclin-dependent kinase 2-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A424CC)

HSP 1 Score: 137 bits (345), Expect = 1.800e-39
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAEL 258
            LL  + FCHS+R+LHRDLKPQN+LI+AEG +KLADFGLAR F V  R YTHEVVTLWYR PEILLG  YY T+ DIWS+GCI AE+
Sbjct:   68 LLQGLAFCHSHRVLHRDLKPQNLLINAEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEM 153
[Close]
BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Match: T1J0E3_STRMM (Protein kinase domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J0E3_STRMM)

HSP 1 Score: 141 bits (355), Expect = 2.020e-39
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:    1 LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYTHEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAELRCGQAAGP 282
            LL  + +CHS+R+LHRDLKPQN+LID EGN+KLADFGLAR F V  R YTHEVVTLWYR PEILLGS +Y T  D+WS+GCI AE+   +A  P
Sbjct:  111 LLQGIAYCHSHRVLHRDLKPQNLLIDVEGNIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRFYNTPVDVWSIGCIFAEMLTRRALFP 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98437.31654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5Y9_9PHAE9.630e-55100.00Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6J3S657_TURTR9.250e-4171.59cyclin-dependent kinase 2 isoform X3 n=7 Tax=Boreo... [more]
A0A7K7LGS5_9AVES1.370e-4069.66CDK2 kinase (Fragment) n=4 Tax=Neognathae TaxID=88... [more]
A0A7K7DQL7_PHEME2.380e-4070.93CDK2 kinase (Fragment) n=1 Tax=Pheucticus melanoce... [more]
UPI000C6DBC404.230e-4067.02cyclin-dependent kinase 2-like n=1 Tax=Centruroide... [more]
A0A2T3ALZ4_9PEZI8.500e-4071.28Kinase-like domain-containing protein n=4 Tax=Diap... [more]
A0A0K8VMC2_BACLA1.170e-3973.26Cell division control protein 2 cognate n=15 Tax=T... [more]
A0A6P4Y4F1_BRABE1.530e-3967.02cyclin-dependent kinase 2-like n=4 Tax=Branchiosto... [more]
UPI0009A424CC1.800e-3972.09cyclin-dependent kinase 2-like n=1 Tax=Rhincodon t... [more]
T1J0E3_STRMM2.020e-3967.02Protein kinase domain-containing protein n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98437contigEcto-sp8_S_contig98437:1..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score177.9
Seed ortholog evalue2.1e-42
Seed eggNOG ortholog2880.D8LE13
Model size282
KEGG koko:K00870,ko:K02206
KEGG Pathwayko04068,ko04110,ko04114,ko04115,ko04151,ko04218,ko04914,ko04934,ko05161,ko05162,ko05165,ko05168,ko05169,ko05200,ko05203,ko05215,ko05222,ko05226,map04068,map04110,map04114,map04115,map04151,map04218,map04914,map04934,map05161,map05162,map05165,map05168,map05169,map05200,map05203,map05215,map05222,map05226
KEGG ModuleM00692,M00693
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG0594@1,KOG0594@2759
EC2.7.1.37,2.7.11.22
Cds size282
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145352.0442646-CDS-Ecto-sp8_S_contig98437:0..1201681145352.0442646-CDS-Ecto-sp8_S_contig98437:0..120Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98437 1..120 +
1681145352.0593462-CDS-Ecto-sp8_S_contig98437:297..4591681145352.0593462-CDS-Ecto-sp8_S_contig98437:297..459Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98437 298..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98437.31654.1prot_Ecto-sp8_S_contig98437.31654.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98437 1..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98437.31654.1

>prot_Ecto-sp8_S_contig98437.31654.1 ID=prot_Ecto-sp8_S_contig98437.31654.1|Name=mRNA_Ecto-sp8_S_contig98437.31654.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=94bp
LLHAVRFCHSNRILHRDLKPQNILIDAEGNLKLADFGLARVFTVSTRKYT
HEVVTLWYRPPEILLGSDYYGTSADIWSVGCILAELRCGQAAGP
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mRNA from alignment at Ecto-sp8_S_contig98437:1..459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98437.31654.1 ID=mRNA_Ecto-sp8_S_contig98437.31654.1|Name=mRNA_Ecto-sp8_S_contig98437.31654.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98437:1..459+ (Ectocarpus species8 EcLAC_412)
CTGCTACACGCCGTGAGGTTTTGCCACAGCAACCGCATCCTCCACAGGGA
CCTGAAGCCGCAGAACATCCTCATTGACGCGGAGGGCAACCTCAAGCTGG
CGGACTTCGGCTTAGCGCGGGTGAGAGCGGAGAGGCTCTCTTCTCTTCTC
TTCTCTTCTCTTCTCTCTAGTAGCGAGCCGCTGCTGCTGGCGTCTCCTGG
GCTTGCTTGTGACGGCGCCGTCTCGTCTCGCCTGTGGTCTCTCACGACCC
CCCGCTGTTGCTCCACACCCTCCCCCAAAACGCTCCCCCGTGTTCAGGTG
TTCACCGTCTCCACCCGGAAGTACACCCACGAGGTGGTGACGCTCTGGTA
CCGGCCTCCGGAAATCCTTCTGGGCTCCGACTACTACGGCACCTCCGCGG
ACATCTGGTCCGTGGGTTGCATCCTCGCAGAACTCAGGTGTGGACAAGCG
GCTGGGCCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98437:1..459+

>mRNA_Ecto-sp8_S_contig98437.31654.1 ID=mRNA_Ecto-sp8_S_contig98437.31654.1|Name=mRNA_Ecto-sp8_S_contig98437.31654.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98437:1..459+ (Ectocarpus species8 EcLAC_412)
CTGCTACACGCCGTGAGGTTTTGCCACAGCAACCGCATCCTCCACAGGGA
CCTGAAGCCGCAGAACATCCTCATTGACGCGGAGGGCAACCTCAAGCTGG
CGGACTTCGGCTTAGCGCGGGTGTTCACCGTCTCCACCCGGAAGTACACC
CACGAGGTGGTGACGCTCTGGTACCGGCCTCCGGAAATCCTTCTGGGCTC
CGACTACTACGGCACCTCCGCGGACATCTGGTCCGTGGGTTGCATCCTCG
CAGAACTCAGGTGTGGACAAGCGGCTGGGCCG
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