mRNA_Ecto-sp8_S_contig9838.31642.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9838.31642.1
Unique NamemRNA_Ecto-sp8_S_contig9838.31642.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9838.31642.1 vs. uniprot
Match: A0A6H5KZ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ94_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.600e-7
Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = -1 
Query:  406 QRRAQDSGDLLKGSGHGSGKKRLARV*ARRSSVRLQPQREHKIAEV 543
            +RRAQDSG  LKGSG  SGKKR ARV ARRS V LQPQ E KIAEV
Sbjct:   46 ERRAQDSGARLKGSGRRSGKKRPARVKARRSLVLLQPQLEQKIAEV 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9838.31642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZ94_9PHAE5.600e-776.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9838contigEcto-sp8_S_contig9838:3247..3798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size553
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145351.3375204-CDS-Ecto-sp8_S_contig9838:3246..36871681145351.3375204-CDS-Ecto-sp8_S_contig9838:3246..3687Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9838 3247..3687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145351.3482268-UTR-Ecto-sp8_S_contig9838:3687..37981681145351.3482268-UTR-Ecto-sp8_S_contig9838:3687..3798Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9838 3688..3798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9838.31642.1prot_Ecto-sp8_S_contig9838.31642.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9838 3247..3687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9838.31642.1

>prot_Ecto-sp8_S_contig9838.31642.1 ID=prot_Ecto-sp8_S_contig9838.31642.1|Name=mRNA_Ecto-sp8_S_contig9838.31642.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=147bp
PLSAGLEEPRTHRPQNDHPFVGVHRGSQPSHPPTCDMQHTVSLLPNAPLE
GTHDARSGGDPTAFLAPACLRGQLPLSLASVTIGIFSWSLPILNSPPRAN
SRGSARRFMTLSLGDLTFLAGPCLLPRQRLLLLVVHLCNFVLPLRL*
back to top

mRNA from alignment at Ecto-sp8_S_contig9838:3247..3798+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9838.31642.1 ID=mRNA_Ecto-sp8_S_contig9838.31642.1|Name=mRNA_Ecto-sp8_S_contig9838.31642.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=552bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9838:3247..3798+ (Ectocarpus species8 EcLAC_412)
CCCCTCTCCGCTGGCCTTGAGGAACCCCGTACTCATCGCCCGCAAAACGA
TCATCCATTTGTCGGTGTCCATCGAGGTAGCCAGCCCTCTCATCCGCCGA
CATGTGACATGCAGCACACAGTTTCTCTCCTGCCAAATGCTCCCCTCGAG
GGCACACATGATGCCAGGAGTGGTGGTGACCCAACCGCGTTCCTGGCGCC
CGCATGCCTTCGCGGGCAGCTTCCTCTCTCCCTTGCTTCGGTTACTATCG
GCATCTTCTCGTGGTCTCTTCCAATCTTGAACTCGCCGCCGAGAGCGAAC
TCCCGGGGAAGTGCTCGCCGTTTTATGACGCTCAGTCTCGGCGATCTCAC
GTTCCTTGCGGGCCCGTGCTTGCTCCCTCGCCAGCGACTGCTGCTCCTCG
TAGTCCACCTCTGCAATTTTGTGCTCCCGCTGCGGTTGTAGTCTTACTGA
AGAACGTCTGGCCTAAACCCTCGCCAGGCGCTTCTTCCCTGATCCGTGCC
CCGAACCTTTCAACAGGTCGCCTGAATCTTGCGCCCGGCGCTGCGATCTA
CT
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9838:3247..3798+

>mRNA_Ecto-sp8_S_contig9838.31642.1 ID=mRNA_Ecto-sp8_S_contig9838.31642.1|Name=mRNA_Ecto-sp8_S_contig9838.31642.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9838:3247..3798+ (Ectocarpus species8 EcLAC_412)
CCCCTCTCCGCTGGCCTTGAGGAACCCCGTACTCATCGCCCGCAAAACGA
TCATCCATTTGTCGGTGTCCATCGAGGTAGCCAGCCCTCTCATCCGCCGA
CATGTGACATGCAGCACACAGTTTCTCTCCTGCCAAATGCTCCCCTCGAG
GGCACACATGATGCCAGGAGTGGTGGTGACCCAACCGCGTTCCTGGCGCC
CGCATGCCTTCGCGGGCAGCTTCCTCTCTCCCTTGCTTCGGTTACTATCG
GCATCTTCTCGTGGTCTCTTCCAATCTTGAACTCGCCGCCGAGAGCGAAC
TCCCGGGGAAGTGCTCGCCGTTTTATGACGCTCAGTCTCGGCGATCTCAC
GTTCCTTGCGGGCCCGTGCTTGCTCCCTCGCCAGCGACTGCTGCTCCTCG
TAGTCCACCTCTGCAATTTTGTGCTCCCGCTGCGGTTGTAG
back to top