mRNA_Ecto-sp8_S_contig9834.31635.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9834.31635.1
Unique NamemRNA_Ecto-sp8_S_contig9834.31635.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Match: D7G1Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Z5_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 1.440e-82
Identity = 133/137 (97.08%), Postives = 134/137 (97.81%), Query Frame = 1 
Query:    1 YISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQQRHGVGLGEAGVSSPVPAGGGDSARHDTFLAMLARYAEVPGSGYKKLERTRS 411
            YISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQ+R GVGLGE GVSSPVPAGGGDSARHDTFLAMLARYAEVPGSGY KLERTRS
Sbjct:  252 YISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQRRDGVGLGEEGVSSPVPAGGGDSARHDTFLAMLARYAEVPGSGYNKLERTRS 388
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BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 5.990e-7
Identity = 44/143 (30.77%), Postives = 66/143 (46.15%), Query Frame = 1 
Query:    1 YISDRKKIPAGPAAMRLVHVDFFSVEG------EVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQQRHGVGLGEAGVSSPVPAGGGDSARHDTFLAMLARYAEVPGSGYKKLERTRS 411
            Y+ DR+KI AGP+   LV  D F V+G       V H+ + GR +DRV+ F       G   PFLFI+NI +PG+   + V+   +    + +  +   +AG  SP  +          FL +  RY  +   G   L   R+
Sbjct: 1632 YLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRVAFF-----QSGPNPPFLFIVNIQMPGDRAHSVVLCWGM----RLKEAMEADKAGRLSPEDS---------NFLRLFTRYISLDLEGGLPLNDIRN 1756
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BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Match: A0A7S2WM21_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WM21_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.610e-6
Identity = 36/92 (39.13%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:    1 YISDRKKIPAGPAAMRLVHVDFFSVE-----GEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQQR 261
            Y+SD+ K+ AG A   LV    +  E       + HVA+KG+CR  V A  +        APFLFILNI VPG+P ++ VM  A+     +R
Sbjct:  143 YMSDKLKVHAGTAVCPLVLYQLYRNEPSRLNDRIDHVAAKGKCRRIVEALREL-----NPAPFLFILNIQVPGHPPMSMVMIFAMPADYDRR 229
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BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Match: A0A7S0RAU5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RAU5_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 2.090e-5
Identity = 27/89 (30.34%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:    1 YISDRKKIPAGPAAMRLVHVDFFSV--EGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQQR 261
            Y++D  K+ A P A  LV VDFF +    + +H+ ++          L   + + E  PF+FI+N+++PG P ++ V+Y A ++ +  R
Sbjct:   21 YMTDNVKVCADPTAFELVGVDFFELPNHSDRYHIGARPES-------LVQVKTEAEEVPFMFIINLIIPGPPHLSMVLYFAPNEASPVR 102
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BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Match: A0A1Z5K383_FISSO (START domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K383_FISSO)

HSP 1 Score: 53.9 bits (128), Expect = 5.050e-5
Identity = 30/86 (34.88%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:    1 YISDRKKIPAGPAAMRLVHVDFFSVEGEVF-----HVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALD 243
            Y  D +KI AGP+  RL+ VD  SV+  ++     H   + +    + A +KS   K +  PF+F++NI++PG P    V Y A+D
Sbjct:  630 YKDDGQKINAGPSIGRLIAVDLVSVDQPLYSGFCVHPRERVQLALAMEAEVKSKGHKSDMPPFVFVVNIVIPGPPYYHGVFYYAID 715
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BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Match: A0A7S0REL4_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0REL4_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 8.660e-5
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:    1 YISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQ 246
            Y+ D+KKIPAG     L  VD   V G V H+   GR       +L S    G   PF  +LN+++PGNP+++ V+  A +Q
Sbjct:  230 YLKDKKKIPAGNTQFVLAAVDMVEVPGPVSHI---GR-------YLPSIRSSG--LPFGVVLNLVIPGNPMLSVVLTFATEQ 299
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BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Match: A0A7S0REA0_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0REA0_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 8.770e-5
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:    1 YISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQ 246
            Y+ D+KKIPAG     L  VD   V G V H+   GR       +L S    G   PF  +LN+++PGNP+++ V+  A +Q
Sbjct:  266 YLKDKKKIPAGNTQFVLAAVDMVEVPGPVSHI---GR-------YLPSIRSSG--LPFGVVLNLVIPGNPMLSVVLTFATEQ 335
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BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Match: A0A445AVS1_ARAHY (START domain-containing protein n=8 Tax=Arachis TaxID=3817 RepID=A0A445AVS1_ARAHY)

HSP 1 Score: 53.1 bits (126), Expect = 9.080e-5
Identity = 27/82 (32.93%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:    1 YISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQ 246
            Y+ D  K+  G   +RL+ VD+F+VE  V  +A   RC  +  A        G+  PF+ ++N+ VP  P  + V+Y A D+
Sbjct:  589 YLKDNSKVVGGDPLLRLIAVDWFTVEQSVDKIALHPRCLVQSEA--------GKKLPFILVINLQVPAKPNYSLVLYFAADR 662
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BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Match: A0A699YP82_HAELA (DUF1336 domain-containing protein n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YP82_HAELA)

HSP 1 Score: 52.4 bits (124), Expect = 9.130e-5
Identity = 31/86 (36.05%), Postives = 41/86 (47.67%), Query Frame = 1 
Query:    1 YISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQQ 258
            Y+ D+KKIPAG        +D   V   V HVA           FL S  D G   PF  I+N+++PGNP++  V   A +Q   Q
Sbjct:   31 YLKDKKKIPAGLTQFVFAAMDLIEVPHVVQHVAR----------FLPSIRDSG--LPFAIIINLIIPGNPLLGVVATFATEQHPNQ 104
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BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Match: A0A7S1ZBZ2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBZ2_TRICV)

HSP 1 Score: 52.8 bits (125), Expect = 9.960e-5
Identity = 30/85 (35.29%), Postives = 41/85 (48.24%), Query Frame = 1 
Query:    1 YISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQ 255
            Y  DRKK  AGP   RL  VD       ++        R+RV   L     +G+  PF+F++NI +PG P    V Y A+D  +Q
Sbjct:  182 YKKDRKKFNAGPPVFRLAAVDIVETPVNIY-TGMAAHPRERVQQSLA----RGDLPPFMFVVNIALPGPPCFHMVYYYAVDDVSQ 261
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9834.31635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G1Z5_ECTSI1.440e-8297.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LI57_ECTSI5.990e-730.77CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2WM21_9STRA3.610e-639.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0RAU5_9CHLO2.090e-530.34Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A1Z5K383_FISSO5.050e-534.88START domain-containing protein n=1 Tax=Fistulifer... [more]
A0A7S0REL4_9CHLO8.660e-537.80Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7S0REA0_9CHLO8.770e-537.80Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A445AVS1_ARAHY9.080e-532.93START domain-containing protein n=8 Tax=Arachis Ta... [more]
A0A699YP82_HAELA9.130e-536.05DUF1336 domain-containing protein n=2 Tax=Haematoc... [more]
A0A7S1ZBZ2_TRICV9.960e-535.29Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9834contigEcto-sp8_S_contig9834:463..2768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score266.9
Seed ortholog evalue7.5e-69
Seed eggNOG ortholog2880.D7G1Z5
Model size602
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28KK0@1,2QT1F@2759
Cds size600
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145350.9145246-CDS-Ecto-sp8_S_contig9834:462..7031681145350.9145246-CDS-Ecto-sp8_S_contig9834:462..703Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9834 463..703 -
1681145350.9296186-CDS-Ecto-sp8_S_contig9834:1198..14471681145350.9296186-CDS-Ecto-sp8_S_contig9834:1198..1447Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9834 1199..1447 -
1681145350.9400885-CDS-Ecto-sp8_S_contig9834:1787..18761681145350.9400885-CDS-Ecto-sp8_S_contig9834:1787..1876Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9834 1788..1876 -
1681145350.9507117-CDS-Ecto-sp8_S_contig9834:2747..27681681145350.9507117-CDS-Ecto-sp8_S_contig9834:2747..2768Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9834 2748..2768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9834.31635.1prot_Ecto-sp8_S_contig9834.31635.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9834 463..2768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9834.31635.1

>prot_Ecto-sp8_S_contig9834.31635.1 ID=prot_Ecto-sp8_S_contig9834.31635.1|Name=mRNA_Ecto-sp8_S_contig9834.31635.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=200bp
YISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYE
DKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQQRHGVGLGEAGVSSP
VPAGGGDSARHDTFLAMLARYAEVPGSGYKKLERTRSFSSPSPPPCISIS
SSSSSPLAPTAASTSVSSSSSASPPPLSSCAPPPTPSPHPREEERQPRQE
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mRNA from alignment at Ecto-sp8_S_contig9834:463..2768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9834.31635.1 ID=mRNA_Ecto-sp8_S_contig9834.31635.1|Name=mRNA_Ecto-sp8_S_contig9834.31635.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2306bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9834:463..2768- (Ectocarpus species8 EcLAC_412)
TACATCTCGGATAGGAAAAAGGTAAGAGTTATCTGTACATGCGGTGGTGT
GTCTGTCTACCAGGTATGTACCTGGTACACAGTTTTGGTGTAATTCGAGA
TACGCGCTGCTGCTCGTCCTCTTGTGTGGATCCAGTGTTGTACGTAGTAC
ATGCAGCTTCCAGGCGAGCCAGAACTTCATTTGTTTCGGGTCTAACTTCT
TGATGTTGGCACTACTGCTGCATAAATAGCGCGATATATACGTGCACTGC
TGGGACGGTACTGCTCGGGTATGCAAGGAAAGACGGCTACAGCAAGCGAC
ACTGACGTCGATACACATGCCGCTACAAGCACTTACAAAACTCGTCTCAG
CTCCATGGGATGGGTTAACCTCTGGTGCATGATGACGGAAACCCATGCTG
GCATGTTCCGTAAAGTTGGTCCAGCAGTCCCATTTGACTGCGGGCTTGCG
GCAGTGCTGTTGTATCGGGGGCGAGCAGCTCGCAAGGTGCAAAAATTGCC
GAAATCATGCAATCCGTTTCGATTCGTCAGGACCTCAGTGGCGCGTAAGA
TTGTGGTTGCTAAATAGCTATCACGACCCCCAGCTCAAAAACGAGCCGCA
CTCCGACGGACTTCGGCCATTGATGGAACAAGCCCATGCGCCCTCTTGGC
CCGTATTCATGTGTAGCGGTCCCGTAGCTCATTTTGCTTTGTTGTGCCCG
CATCGGCCTAAATTTTCGAACCCACCACTCGGCAGTACGTACACGATCGC
ACCTACGAATCTCATTGCGCATGTTTTGCCATACTTTGGGCGGTGGGCTC
GTTGGGCCACAACTAATAACGGGCTGCTTCCGACAGGAGGCTTTCTTTTT
TTGATCGAGCTTCCATCGTTTTTGTGATCGGCATCGGCGCAGATTCCTGC
AGGTCCTGCGGCAATGCGTCTGGTTCACGTAGACTTCTTCTCGGTGGAGG
GGGAAGTGTTCCACGTGGCTTCGAAGGGCAGGTGATGTTTTCTGCTGACA
ACTTTTTTGGGGGTTGATCTCCCTCGCTTGCGACCGTGTGAACCGTGTAG
ATAGTCAGATGCAGGCGCTGGATATCTCTAGCGCTATGATCTGGTATTAG
TGCGTACAAGTACAGCACTGCTGGGAACAAATAAGGTTCTAGCCGATGCC
AAAAAGGCTGGTTGTGAGGAGTACGCACTGGCGGGAACCAATACGGTTCC
AGCCCCTTCCCTCCCGCGTGTTCATTTTACGTCCGTGTTGCGCCAAACTT
TCGCGAACAGTTATGTATGCACCTTGCTCCTCCTGGTGACACTGCTGCCA
CGTATCTCTGGAAAACTGCAGGTGCCGAGATCGCGTGTCTGCATTCCTGA
AGAGCTACGAGGACAAGGGCGAGGCCGCCCCGTTCCTCTTCATCCTCAAC
ATCCTGGTGCCCGGCAATCCCGTCGTGGCCACCGTAATGTACTTGGCCCT
GGATCAGACTACTCAGCAGAGGCACGGGGTTGGTCTCGGCGAGGCGGGGG
TTTCTTCCCCCGTACCCGCGGGCGGCGGCGATAGCGCTCGCCACGACACG
TTTCTTGCAATGCTTGCGAGGTACAGGCTCGGCGTGTGACGGCTCTTTGT
TTGGTGAATGAAGTTGGTGACGTTTGGGGCGGGTGGTGTTGTCGTGGAGA
GCGAGGGAGAGAGGCGTGTGATGTGTGCAGCGTGGCACATGGCCATGTAG
AACTTGGGGGGGGGGCGGATAATCCTGGCTTTTATTTTTGCGCAGGAGGG
GATGTTCGGGGTTTGCTTGGCTTGGGCGGGGCAAGGCGAGAACGAGGCGC
AGGCCGAACCCGATCACTTGCCCCCCCCCCCCCCCCCCCGTCCGCGCGCC
CGCGGCCCTTGTGCGTCGCCTCCTGCGCCCTTGTTTTTTGGTGCCAGTGA
CCGGTNNNNNNNNNNGGGGTCGGTGGGGGTTTGGTTGGGCTGGGGGGGGG
GAGGGGAAACCGGGGCGCAGCCTGGCCCCGGTTCATTCGCCCCCCCCCCC
CCCATGTGTGCCTCGTTCACGTGGCCTTGTGCTGCTGCTGCTGCTGCTGT
TGTTGCTGTCACCAGGTACGCTGAGGTGCCCGGGTCGGGCTACAAGAAGC
TCGAACGCACCCGTTCTTTTTCCTCCCCTTCTCCCCCTCCTTGTATTTCT
ATTTCCTCCTCCTCTTCCTCGCCCCTTGCTCCGACCGCGGCGAGCACCAG
CGTTTCCTCCTCCTCTTCTGCCTCCCCGCCCCCGTTGTCCTCCTGCGCAC
CCCCACCAACCCCGTCGCCTCACCCACGAGAAGAAGAGCGACAGCCGCGG
CAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9834:463..2768-

>mRNA_Ecto-sp8_S_contig9834.31635.1 ID=mRNA_Ecto-sp8_S_contig9834.31635.1|Name=mRNA_Ecto-sp8_S_contig9834.31635.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9834:463..2768- (Ectocarpus species8 EcLAC_412)
TACATCTCGGATAGGAAAAAGATTCCTGCAGGTCCTGCGGCAATGCGTCT
GGTTCACGTAGACTTCTTCTCGGTGGAGGGGGAAGTGTTCCACGTGGCTT
CGAAGGGCAGGTGCCGAGATCGCGTGTCTGCATTCCTGAAGAGCTACGAG
GACAAGGGCGAGGCCGCCCCGTTCCTCTTCATCCTCAACATCCTGGTGCC
CGGCAATCCCGTCGTGGCCACCGTAATGTACTTGGCCCTGGATCAGACTA
CTCAGCAGAGGCACGGGGTTGGTCTCGGCGAGGCGGGGGTTTCTTCCCCC
GTACCCGCGGGCGGCGGCGATAGCGCTCGCCACGACACGTTTCTTGCAAT
GCTTGCGAGGTACGCTGAGGTGCCCGGGTCGGGCTACAAGAAGCTCGAAC
GCACCCGTTCTTTTTCCTCCCCTTCTCCCCCTCCTTGTATTTCTATTTCC
TCCTCCTCTTCCTCGCCCCTTGCTCCGACCGCGGCGAGCACCAGCGTTTC
CTCCTCCTCTTCTGCCTCCCCGCCCCCGTTGTCCTCCTGCGCACCCCCAC
CAACCCCGTCGCCTCACCCACGAGAAGAAGAGCGACAGCCGCGGCAGGAG
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