mRNA_Ecto-sp8_S_contig98325.31634.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98325.31634.1
Unique NamemRNA_Ecto-sp8_S_contig98325.31634.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98325.31634.1 vs. uniprot
Match: D7FTF5_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTF5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.630e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 MAFRATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIKV 138
            MAFRATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIKV
Sbjct:    1 MAFRATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIKV 46
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BLAST of mRNA_Ecto-sp8_S_contig98325.31634.1 vs. uniprot
Match: A0A7S2WV54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV54_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-8
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 MAFRATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQIL 123
            MA R T+A+R+ V KTSTGLVGL VDVNAR N I++Q Q+L
Sbjct:    6 MALRLTRALRLAVSKTSTGLVGLPVDVNARVNLISMQSQVL 46
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BLAST of mRNA_Ecto-sp8_S_contig98325.31634.1 vs. uniprot
Match: A0A7S2SRG1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRG1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.380e-8
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 MAFRATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQIL 123
            MA R T+A+R+ V KTSTGLVGL VDVNAR N I++Q Q+L
Sbjct:    6 MALRLTRALRLAVSKTSTGLVGLPVDVNARVNLISMQSQVL 46
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BLAST of mRNA_Ecto-sp8_S_contig98325.31634.1 vs. uniprot
Match: A0A7S2BEJ1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BEJ1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.420e-7
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 AFRATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIK 135
            A R T+ V   V KTSTGLVGL VD+N RAN IA+Q+Q+LE +K
Sbjct:    7 ALRLTRPVAQAVHKTSTGLVGLKVDLNGRANLIAMQQQLLEAVK 50
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BLAST of mRNA_Ecto-sp8_S_contig98325.31634.1 vs. uniprot
Match: A0A835Z296_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z296_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 7.410e-6
Identity = 27/43 (62.79%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   10 RATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIKV 138
            RAT   R   KKTSTGLVGL VD NAR N    Q  ILEKIK+
Sbjct:   13 RATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKI 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98325.31634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FTF5_ECTSI2.630e-20100.00NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus... [more]
A0A7S2WV54_9STRA1.670e-865.85Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SRG1_9STRA3.380e-865.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BEJ1_9STRA1.420e-761.36Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835Z296_9STRA7.410e-662.79NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98325contigEcto-sp8_S_contig98325:22..159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-21_001150.1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145350.880464-CDS-Ecto-sp8_S_contig98325:21..1591681145350.880464-CDS-Ecto-sp8_S_contig98325:21..159Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98325 22..159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98325.31634.1prot_Ecto-sp8_S_contig98325.31634.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98325 22..159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98325.31634.1

>prot_Ecto-sp8_S_contig98325.31634.1 ID=prot_Ecto-sp8_S_contig98325.31634.1|Name=mRNA_Ecto-sp8_S_contig98325.31634.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=46bp
MAFRATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIKV
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mRNA from alignment at Ecto-sp8_S_contig98325:22..159+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98325.31634.1 ID=mRNA_Ecto-sp8_S_contig98325.31634.1|Name=mRNA_Ecto-sp8_S_contig98325.31634.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98325:22..159+ (Ectocarpus species8 EcLAC_412)
ATGGCGTTTAGGGCGACGCAAGCGGTGCGAATGGTGGTCAAGAAGACGTC
CACGGGGCTTGTGGGATTAGCTGTGGACGTCAACGCGCGAGCCAACTTCA
TCGCGTTGCAAAAACAGATCCTAGAGAAGATCAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98325:22..159+

>mRNA_Ecto-sp8_S_contig98325.31634.1 ID=mRNA_Ecto-sp8_S_contig98325.31634.1|Name=mRNA_Ecto-sp8_S_contig98325.31634.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98325:22..159+ (Ectocarpus species8 EcLAC_412)
ATGGCGTTTAGGGCGACGCAAGCGGTGCGAATGGTGGTCAAGAAGACGTC
CACGGGGCTTGTGGGATTAGCTGTGGACGTCAACGCGCGAGCCAACTTCA
TCGCGTTGCAAAAACAGATCCTAGAGAAGATCAAGGTG
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