mRNA_Ecto-sp8_S_contig9832.31633.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9832.31633.1
Unique NamemRNA_Ecto-sp8_S_contig9832.31633.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9832.31633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9832contigEcto-sp8_S_contig9832:5398..5976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size579
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145350.764033-UTR-Ecto-sp8_S_contig9832:5397..54461681145350.764033-UTR-Ecto-sp8_S_contig9832:5397..5446Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9832 5398..5446 +
1681145350.7882974-UTR-Ecto-sp8_S_contig9832:5767..59761681145350.7882974-UTR-Ecto-sp8_S_contig9832:5767..5976Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9832 5768..5976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145350.7758613-CDS-Ecto-sp8_S_contig9832:5446..57671681145350.7758613-CDS-Ecto-sp8_S_contig9832:5446..5767Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9832 5447..5767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9832.31633.1prot_Ecto-sp8_S_contig9832.31633.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9832 5447..5767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9832.31633.1

>prot_Ecto-sp8_S_contig9832.31633.1 ID=prot_Ecto-sp8_S_contig9832.31633.1|Name=mRNA_Ecto-sp8_S_contig9832.31633.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=107bp
MYFEAKPVRGDGGGLEARRRRLSFLSNPICGASSAVPLLILQSECSLRAV
KTGCWECSLRGLGKERRRKRVVPCPSRIPCFRRMIDSAVAGPPFVRRALG
VLAVQK*
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mRNA from alignment at Ecto-sp8_S_contig9832:5398..5976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9832.31633.1 ID=mRNA_Ecto-sp8_S_contig9832.31633.1|Name=mRNA_Ecto-sp8_S_contig9832.31633.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=579bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9832:5398..5976+ (Ectocarpus species8 EcLAC_412)
GGCAAGGACTCACCACGTTACTGATGATTGTTTTGTCTAGAGACGTGGTA
TGTACTTCGAGGCGAAACCTGTGCGGGGGGACGGCGGGGGACTGGAGGCG
AGGCGAAGACGCCTTTCGTTTTTAAGTAATCCAATCTGCGGGGCCTCCTC
TGCTGTACCTCTTCTGATACTACAGTCGGAGTGCTCTTTGAGGGCGGTTA
AGACAGGATGTTGGGAGTGCTCTCTCCGGGGGTTGGGCAAGGAGCGAAGG
CGAAAGAGGGTGGTCCCGTGTCCGTCCCGGATTCCGTGTTTCCGTAGAAT
GATTGATAGTGCTGTGGCTGGCCCCCCTTTTGTTCGAAGGGCCTTGGGGG
TGCTGGCCGTACAAAAGTAGCATCTGTTCCCTACTCTTCTCTGTCTCGGT
AGTGAATGATTGTTCTGTCGTCTGTCTGTCTGGCCCAGTAGTGAAAGACC
TCTCTTGGGTAGGGGCCGTATGATCATCAGCGCAAGCGGTTTTCTATTTG
GAAGAGTCATTTGAAATATTTACCTATCATCATGGGGGTGCAGTAGCCGG
CCAAAAGAGGGCACACGTGTTGAATGGAT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9832:5398..5976+

>mRNA_Ecto-sp8_S_contig9832.31633.1 ID=mRNA_Ecto-sp8_S_contig9832.31633.1|Name=mRNA_Ecto-sp8_S_contig9832.31633.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9832:5398..5976+ (Ectocarpus species8 EcLAC_412)
ATGTACTTCGAGGCGAAACCTGTGCGGGGGGACGGCGGGGGACTGGAGGC
GAGGCGAAGACGCCTTTCGTTTTTAAGTAATCCAATCTGCGGGGCCTCCT
CTGCTGTACCTCTTCTGATACTACAGTCGGAGTGCTCTTTGAGGGCGGTT
AAGACAGGATGTTGGGAGTGCTCTCTCCGGGGGTTGGGCAAGGAGCGAAG
GCGAAAGAGGGTGGTCCCGTGTCCGTCCCGGATTCCGTGTTTCCGTAGAA
TGATTGATAGTGCTGTGGCTGGCCCCCCTTTTGTTCGAAGGGCCTTGGGG
GTGCTGGCCGTACAAAAGTAG
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