mRNA_Ecto-sp8_S_contig9820.31610.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9820.31610.1
Unique NamemRNA_Ecto-sp8_S_contig9820.31610.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Match: A0A6H5KRM5_9PHAE (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRM5_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 3.300e-104
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = 1 
Query:    1 LHQAEMALSKGEVPVGCVVVHKPTARVISCGHNETSEAFNATRHAELVAIDGILRAQTDLSLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKTGRQEQPRAETR 495
            L +AEMALSKGEVPVGCVVVHKPTAR+ISCGHNETSEAFNATRHAELVAIDGILRAQTDL LL ECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKTG+ EQP AETR
Sbjct:   22 LKEAEMALSKGEVPVGCVVVHKPTARIISCGHNETSEAFNATRHAELVAIDGILRAQTDLCLLSECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKTGQHEQPPAETR 186
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Match: A0A482UKK3_9ARCH (Nucleoside deaminase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UKK3_9ARCH)

HSP 1 Score: 167 bits (423), Expect = 6.600e-46
Identity = 83/153 (54.25%), Postives = 104/153 (67.97%), Query Frame = 1 
Query:    1 LHQAEMALSKGEVPVGCVVVHKPTARVISCGHNETSEAFNATRHAELVAIDGILRAQTDLSLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRK 459
            + QAE+A+   EVPVGCV V + T  V+  G N+T+   NATRHAELVAID IL     +   + CDL+VTCEPCIMCAAAL  ++I  V FGC NDRFGG GS+L +H      + H Y   SG+L DEAI +F++FY R+N +APE KRRK
Sbjct:   12 IQQAEIAIEHSEVPVGCVFVDRTTKEVLGSGFNQTNLTLNATRHAELVAIDAILSHGHSVEAFKNCDLYVTCEPCIMCAAALAKLQIAKVFFGCHNDRFGGNGSILHIHTNPYG-NAHAYDVESGVLKDEAIEIFQRFYDRENERAPESKRRK 163
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Match: A0A4D9D5M2_9STRA (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5M2_9STRA)

HSP 1 Score: 166 bits (419), Expect = 5.650e-45
Identity = 85/173 (49.13%), Postives = 111/173 (64.16%), Query Frame = 1 
Query:    1 LHQAEMALSKGEVPVGCVVVHKPTA------------------RVISCGHNETSEAFNATRHAELVAIDGILRAQTDLSLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKTG 465
            L + ++A+ +GEVPVG V VH+P +                  +++  GHN T+   N TRHAELV +D IL      S+ +ECD++VTCEPCIMCA AL  +KI+ VVFGC NDRFGGCGS+LSVH    P   H Y   +GL+ +EAI LFK FY+R+N +AP+ KRRK G
Sbjct:   16 LAEGQIAIEEGEVPVGVVFVHRPDSPKNTACSIDSSVSVSGPGKILGKGHNRTNATKNGTRHAELVIVDEILARGNPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVH--GAPHLRHRYVADAGLMENEAITLFKSFYARENRQAPDTKRRKKG 186
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Match: A0A6J8E093_MYTCO (tRNA-specific adenosine deaminase 2 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8E093_MYTCO)

HSP 1 Score: 160 bits (405), Expect = 3.650e-43
Identity = 83/154 (53.90%), Postives = 107/154 (69.48%), Query Frame = 1 
Query:   10 AEMALSKGEVPVGCVVVHKPTARVISCGHNETSEAFNATRHAELVAIDGILR--AQTDL---SLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRR 456
            AE AL  GEVPVGC++V+    + I+ G NE +E  NATRHAE+VAID +L+   + DL   ++ REC L+VT EPCIMCA ALR V+I  V++GC+NDRFGGCGS+L VH   LP  G +  C S ++A+ AI L K FY  QN+ APE KR+
Sbjct:   19 AEEALKSGEVPVGCLLVYD--GKEIAVGRNEVNETKNATRHAEIVAIDKVLKFSEENDLDSKAVFRECILYVTVEPCIMCAGALRQVEIPLVIYGCANDRFGGCGSILPVHSAELPSLGPSLQCISNVMAERAIQLLKDFYKGQNLNAPENKRK 170
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Match: A0A835Z0K4_9STRA (tRNA specific adenosine deaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K4_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.360e-42
Identity = 87/161 (54.04%), Postives = 108/161 (67.08%), Query Frame = 1 
Query:    1 LHQAEMALSKGEVPVGCVVVHK--------PTAR------VISCGHNETSEAFNATRHAELVAIDGILRAQTDLSLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGS-LPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKA 438
            L  AE AL  GEVPVGCV+V          P  R      V++ GHNET+   NATRHAELVAID   RA  +   +  C+LFVTCEPCIMCAAAL  + I  V FGC NDRFGGCGS++SVH+GS +  + HTYP  +GL  ++A+ALF++FY+R+N KA
Sbjct:   18 LELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAID---RALAEGRSVTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYPVVTGLRKEDAVALFRKFYARENGKA 175
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Match: A0A5N5DET6_9PEZI (tRNA-specific adenosine deaminase subunit tad2 n=3 Tax=Botryosphaeriaceae TaxID=45131 RepID=A0A5N5DET6_9PEZI)

HSP 1 Score: 158 bits (399), Expect = 4.410e-42
Identity = 84/154 (54.55%), Postives = 106/154 (68.83%), Query Frame = 1 
Query:    1 LHQAEMALSKGEVPVGCVVVHKPTARVISCGHNETSEAFNATRHAELVAIDGILRAQTDLSLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKT 462
            LH AE+AL+  E PVGCV V +   RVI  G N+T+ + N TRHAE VAI  IL A+   S+LRE DL+VT EPC+MCA+ALR   I+ V FGC NDRFGG G VL++H  S P     YP H G+  +EAI L ++FY ++NVKAPEPK++ T
Sbjct:   27 LHMAELALATDETPVGCVFVRE--GRVIGRGMNDTNRSLNGTRHAEFVAISQIL-AEHPASVLRETDLYVTVEPCVMCASALRQFGIRAVYFGCWNDRFGGTGGVLNIH--SDPSVDKPYPVHGGIFREEAIMLLRKFYVQENVKAPEPKQKGT 175
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Match: A0A7C8YGT1_OPUST (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YGT1_OPUST)

HSP 1 Score: 157 bits (398), Expect = 4.980e-42
Identity = 85/163 (52.15%), Postives = 114/163 (69.94%), Query Frame = 1 
Query:    1 LHQAEMALSKGEVPVGCVVVHKPTARVISCGHNETSEAFNATRHAELVAIDGILRA-------QTD-LSLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLP---MSGHT-YPCHSGLLADEAIALFKQFYSRQNVKAPEPKR 453
            + +A++AL K EVPVGCV+V K   +VI+ G N T+E  NATRHAE+ AIDG+LR        Q+D +  L EC L+VTCEPCIMC+AAL  +K+K V +GC+NDRFGGCGS+LS+H  S     +SG   + C  G++A EA++LF+ FY R N  AP+P+R
Sbjct:   20 MQEAKVALQKLEVPVGCVIVEK--GKVIAFGSNRTNETRNATRHAEMEAIDGLLRQWLADGLLQSDVIQRLSECILYVTCEPCIMCSAALSFLKLKEVYYGCANDRFGGCGSILSLHSTSSERCIISGSKGFKCVGGIMASEAVSLFQSFYERGNPNAPKPRR 180
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Match: R4XI84_TAPDE (tRNA-specific adenosine deaminase subunit tad2 n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XI84_TAPDE)

HSP 1 Score: 158 bits (399), Expect = 5.290e-42
Identity = 78/149 (52.35%), Postives = 99/149 (66.44%), Query Frame = 1 
Query:    1 LHQAEMALSKGEVPVGCVVVHKPTARVISCGHNETSEAFNATRHAELVAIDGILRAQTDLSLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEP 447
            L QAE AL   EVPVGCV VH+PT  V++ G N+T+ + N T HAE VAI+ ILR     S+ RE DL+VT EPC+MCA+ALR ++++ V FGC NDRFGGCGSV S+H  +       Y   SG+   EAI L ++FY  QN  AP+P
Sbjct:   35 LQQAETALLNKEVPVGCVFVHQPTGTVLATGANQTNASLNGTLHAEFVAIESILRDHPP-SIFRESDLYVTVEPCVMCASALRQLQVRKVYFGCGNDRFGGCGSVFSIHSDASKTGDAAYMVESGIFRKEAIMLLRRFYLLQNESAPKP 182
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Match: A0A3P8V9E1_CYNSE (Adenosine deaminase tRNA specific 2 n=3 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8V9E1_CYNSE)

HSP 1 Score: 156 bits (394), Expect = 2.140e-41
Identity = 80/158 (50.63%), Postives = 109/158 (68.99%), Query Frame = 1 
Query:    4 HQAEMALSKGEVPVGCVVVHKPTARVISCGHNETSEAFNATRHAELVAIDGILR--AQTDLSLLRECD---LFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKT 462
            + A+ AL KGEVPVGC++V+   + V+  G NE +E+ NATRHAE+V++D +L      DL +   C+   L+VT EPC+MCAAALR +++ +VVFGC NDRFGGCGSVL V    LP +G  + C SG  A+EA+ + K FY ++N  AP+PK RKT
Sbjct:   32 NMAKEALEKGEVPVGCLMVYN--SEVVGKGRNEVNESKNATRHAEMVSVDQLLDWCGHRDLDVKSVCERTVLYVTVEPCVMCAAALRLLQVSSVVFGCRNDRFGGCGSVLDVSSADLPQTGTKFQCVSGHRAEEAVEMLKTFYKQENPNAPKPKTRKT 187
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Match: A0A1Y1WLR4_9FUNG (Cytidine deaminase-like protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WLR4_9FUNG)

HSP 1 Score: 155 bits (393), Expect = 2.340e-41
Identity = 78/152 (51.32%), Postives = 104/152 (68.42%), Query Frame = 1 
Query:    1 LHQAEMALSKGEVPVGCVVVHKPTARVISCGHNETSEAFNATRHAELVAIDGILRAQTDLSLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRR 456
            L  AE AL   EVPVGCV VH  + +V+  G NET+E  N TRHAE+VAID +L +   L   ++ DL+VT EPCIMCA+ALR +KI++VV+GC NDRFGGC SVL+V+     + G  YP   G   DEAI + ++FY R+N  AP+P+++
Sbjct:   15 LDMAEEALQTSEVPVGCVFVH--SGKVVGRGRNETNETKNGTRHAEIVAIDRMLASGFQLEDFQQTDLYVTVEPCIMCASALRQIKIRSVVYGCGNDRFGGCDSVLNVNTDE-GLDGTPYPAEGGFYKDEAILMLRKFYVRENTNAPQPRKK 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9820.31610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRM5_9PHAE3.300e-10495.15CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A482UKK3_9ARCH6.600e-4654.25Nucleoside deaminase n=1 Tax=archaeon TaxID=190666... [more]
A0A4D9D5M2_9STRA5.650e-4549.13CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A6J8E093_MYTCO3.650e-4353.90tRNA-specific adenosine deaminase 2 n=3 Tax=Mytilu... [more]
A0A835Z0K4_9STRA3.360e-4254.04tRNA specific adenosine deaminase n=1 Tax=Tribonem... [more]
A0A5N5DET6_9PEZI4.410e-4254.55tRNA-specific adenosine deaminase subunit tad2 n=3... [more]
A0A7C8YGT1_OPUST4.980e-4252.15CMP/dCMP-type deaminase domain-containing protein ... [more]
R4XI84_TAPDE5.290e-4252.35tRNA-specific adenosine deaminase subunit tad2 n=1... [more]
A0A3P8V9E1_CYNSE2.140e-4150.63Adenosine deaminase tRNA specific 2 n=3 Tax=Cynogl... [more]
A0A1Y1WLR4_9FUNG2.340e-4151.32Cytidine deaminase-like protein n=1 Tax=Linderina ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9820contigEcto-sp8_S_contig9820:2143..6836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score320.1
Seed ortholog evalue6e-85
Seed eggNOG ortholog2880.D8LH63
Preferred nameTAD2
Model size1538
KEGG rclassRC00074,RC00514,RC00809
KEGG koko:K01485,ko:K15441
KEGG ReactionR00974,R01411,R02922
KEGG Pathwayko00240,ko00330,ko01100,map00240,map00330,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0019239,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1902494
Exons5
EggNOG free text desc.deaminase activity
EggNOG OGsCOG0590@1,KOG1018@2759
Ec32 ortholog descriptionCMP/dCMP deaminase, zinc-binding
Ec32 orthologEc-24_000690.1
EC3.5.4.1
Cds size483
COG Functional cat.FJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9820.31610.1prot_Ecto-sp8_S_contig9820.31610.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9820 3183..6821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145349.1027095-UTR-Ecto-sp8_S_contig9820:2142..31821681145349.1027095-UTR-Ecto-sp8_S_contig9820:2142..3182Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9820 2143..3182 -
1681145349.1822307-UTR-Ecto-sp8_S_contig9820:6821..68361681145349.1822307-UTR-Ecto-sp8_S_contig9820:6821..6836Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9820 6822..6836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145349.1209066-CDS-Ecto-sp8_S_contig9820:3182..32441681145349.1209066-CDS-Ecto-sp8_S_contig9820:3182..3244Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9820 3183..3244 -
1681145349.1341245-CDS-Ecto-sp8_S_contig9820:4420..45211681145349.1341245-CDS-Ecto-sp8_S_contig9820:4420..4521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9820 4421..4521 -
1681145349.146045-CDS-Ecto-sp8_S_contig9820:4828..49601681145349.146045-CDS-Ecto-sp8_S_contig9820:4828..4960Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9820 4829..4960 -
1681145349.1577594-CDS-Ecto-sp8_S_contig9820:5544..56271681145349.1577594-CDS-Ecto-sp8_S_contig9820:5544..5627Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9820 5545..5627 -
1681145349.1720958-CDS-Ecto-sp8_S_contig9820:6716..68211681145349.1720958-CDS-Ecto-sp8_S_contig9820:6716..6821Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9820 6717..6821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9820.31610.1

>prot_Ecto-sp8_S_contig9820.31610.1 ID=prot_Ecto-sp8_S_contig9820.31610.1|Name=mRNA_Ecto-sp8_S_contig9820.31610.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=161bp
MALSKGEVPVGCVVVHKPTARVISCGHNETSEAFNATRHAELVAIDGILR
AQTDLSLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSV
LSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKTG
RQEQPRAETR*
back to top

mRNA from alignment at Ecto-sp8_S_contig9820:2143..6836-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9820.31610.1 ID=mRNA_Ecto-sp8_S_contig9820.31610.1|Name=mRNA_Ecto-sp8_S_contig9820.31610.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4694bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9820:2143..6836- (Ectocarpus species8 EcLAC_412)
CTTCATCAGGCGGAGATGGCTCTGAGCAAAGGAGAGGTTCCGGTGGGCTG
CGTCGTTGTGCATAAGCCTACCGCGCGGGTTATCAGCTGTGGCCACAACG
AAACTAGCGAAGCCTTTAACGTGAGGATCGTCCCACATACTGTCGGTTGT
GTGCTTTCACCGCGTGTAGGCCACCCAATGACATCCTATCCTTTATATGT
GCCTGATTGTTTTTGCATGATGGCCCGCTACGTTTCCACGGCAAGAACGA
TACTGGCACGTCATGGCTGGCATTCGTGAATACTCTGATACCCACCGTTC
CTGTTTCTGTTGCGTGATACATTCCCTCAAACGCCTCTTCTTATCACATC
GCATCCTGCAGCCATATGCTATCATATCGCCTATGCACCCCCCGACATAT
TGGTAGCATACCGTTTGTCCTGACCGAGACTATGTAGCCCAGTCGCCAAC
GACCACGCTGGATGATCAGAATCCTCGTTCCGTTTCGCCTCGTTGTGTAG
TTCCTTGTAGGGAGCAAATGGAGCTCTGTCAACTGTCTAGGCCCACGAGG
CTTGACGACCAGCGACAGGCTGGTGGCCTCTCGTTGGGACGAGAAGGATC
TCCTCGATTGAGTGTGCAATTGCCGGCAGAGGTAGTAGGCGTACAATCAT
TTGGTAACCTATACGTCCCACCGCCTATTTTCCATTCCCTTTAACCACCT
GGTAGAGTGAGCGCCTTCCGAAGGGCTCTAGCTGCTATTTTTTCATGTCG
GTACTCCTTTGCCCACCCACCTAAAGTATTTTGGGCTAGCGTTCCTGAGA
GATGCGTACACACACCAAGACGATATTATCACGCGCCTGACAAGCACGTA
CGGCGCGGTAGCTGCTGATATTCTTGTGTATATACGAGGTAAGGTGGGGG
TAGGTATGGATGGACGTGTGCGTACCAGTGTTAACGAGCAAGTGCACTGA
TGTGTGTCAATGCTAGATGAACTGAAAAAACGTTGGGTAGGAATCAAACA
GCAGTGTTGCGAGTTAATCTGTACTCTTGGTTGCGTTGGGGATATGTCTC
TCTCGGCAGGTATGCAATGCGCCTTCCTCTCTGCATGTCGGGTTCGGGTA
TCACGTCAATCGTAGACTAGACCGAAGTTAGAAATCCGAGTGATGACTCA
AATGATCAGTCAGTGCGCTCGAAGTCTGACAAGACCGTTTTGATGTCTTT
TCCCAACAGGCTACCCGACATGCTGAACTTGTGGCCATCGACGGCATTCT
ACGAGCACAGACCGATCTCTCCCTTTTAAGAGAATGTGACCTGTGAGTAT
AGTCTATAAGAGTAGAACAATTTTCCTTGTACTACTGCAGCTTAAGCACG
AGTTCATCATCACAGTGTTATTGCCGGTGCCACAGCGCTAGATGCCCACT
TAGCATCTAGAATCAAAGGTCGCGTATGTGAGGCGGTTTTGCTGGCAGCG
ACTATTGGAAATATCCCTTTTTGGTCGTGGAATCCGGTGCAGAAGTCATA
TGGTCGCAGTAGCGGCAACTCATAAATTCAGGCGCTTCCTCGGTTTGGCA
GAGGAAGTCTGTGACCCCACCAGGGCAGCCTAGTAGGATGTGGTTGTTGA
GCACACATTCATGCTCAGGATGTGTCTTTGCACCCGCACAATCATGTTTG
CCGATCGTGTTCATGAGCAACGCCGTTTCGCAGCGGGAGAACAGGTTCAA
TCTGACCTGTCAGCACACTGACACTATGCTTCTCAGTGTAAGGTGGTAGC
GCACAATGACTTTCGGGTTCCCAAGGGCGCCAAAAGCAGGTCATATACTG
GTATACAGTATACTCATATAGGCTAGCTCCCCGTGTTGGTCCCCGCGTGG
TTGTCTCTCTCGGTTCGTCTGCTAAGGTTTGTTACATGTGAGCCGTGCAT
CATGTGTGCGGCAGCACTGCGCGATGTGAAGATCAAGACAGTCGTGTTCG
GTTGCAGTAATGACCGATTTGGAGGCTGTGGGTCTGTGCTCAGTGTTCAT
GACGGCAGGTAACGACCGTGCATCTTCTGATTAGGTTCACCGGTATTGCT
GAGCAATTCACTTCGATCAATGTCTGTTTTGTGAAAAACAGTTTCAAAGA
TAGCTGGGCAACGGGTTTCTAATCAACCGAACAGTTTGACGGTTGAGGAC
CTCACATCGAGGTTGTACGTGCTGCCGTAGGTGAATCACGCCGAGGGGTC
GTGCCTGGCTATGGGCGGTTGTAAGGGACAAGTGGCATTAGTACATTCAA
TCTGATCCTGTTTGGCCAAGTGACGCTGACTTCCTGACGTCCTGCTTGGT
TTGAAAATTTTGAAGTCTACCGATGTCAGGTCACACGTACCCGTGCCATT
CAGGACTTCTGGCGGACGAAGCAATTGCACTCTTCAAGCAATTCTATTCT
AGGCAGAACGTTAAAGGTAAGAAGCCCATGTTCTTCATACAGCACAACCA
AGACTATTTTGGTTCATCAACCCACGTTTATCAAGTGGTCCGAAGTTTGG
ATATGCCAGCATGTTTTTTTAATATTGCGAGCTGCAAGGGACAGCCAGGG
GGCATGTTGCGGTTGCGCCGGTGTAGTGTGGTCACACCTCGGAAAACGGT
TATCGGTCGTCTTGAATGGACCCAATGCTTGTGAGGACACTCGGTCAACC
ATCGCAAACGTGCAAAGTGACTGGCACATTGAACATTCTTCGCGGGACAG
AGGTTTTGGGAATATTGGAAAAGAAGTGGTGAAGCGCTCAGTTCTCACCC
ATACGTGATGCTTTGGCGTCATCACGATCTTGCCACTACCCCATGCACAT
CTCTGGCTGCAAACTTCCTGTGTATGATGGCAGCCAGACTCCGCGAACCT
GATATGATCTTCATGGCATTAGCACAAGGCAACCCACTCAAGAGATGTTG
TAGAAAGCCCCCCGAAAGGCGATAGTGTCCATCACCCTTTCATGTTGCTA
TAGTTTCGTTGCTCACAGCTTTTCCCTATCCTCCGTTGCCTCTGTACAGT
GTAGGACCGCTCCCACCCGGCGTCGCGAGGTAATTCCTCGAGGTGCATGC
CTTCATGTAGTACATTAATGGTTTGTAGTGTAGCATCCATGAACAAGCGC
TCTTTGAAGCGTGCACTTTGGAGCTCACCGGGATCATACTCCTCCCGACC
CTCAGCACTCTGGGTAGTGAAATGGAACGTGGTGAAGATCTCCAAAGTTG
AAAAGAGTCGAGTAAAAGTTCACAGTACGAGCTGCCCTTCAAAGGGAGCT
AACGGCCTTGATGCCAGCTGGTGGGATAGAAACCGTCCCGTTATAAAAAC
CGTCCCGTTTTTATAATTGTGTAGAAAATGACGTGAGGACGGACCCTCCC
CCTCCTGGGTAGAGACATGGGGCAAGAACGATATGGAAAACAGGGAAAAC
GTTGGGAATCTGTAAAGTTGCGAAGAAACGTGGACCTACGAACTACAGTG
GCCACGACACCCCTTATCAGATAAGATACGCAATACTTTTTGGTACGGTA
CGCTAGGAGCGCCCAAATGTCGACCGTAGCCTGTCTCGAAAGGGAAACGT
AAAATAATGAGTACACTCGCCCCCTTTCTTGACGTGTTTCAGCACCAGAG
CCCAAAAGAAGAAAGACGGGACGACAGGAGCAACCACGTGCGGAGACGAG
ATGACGCAGGTTTCATTGGGAGAAGCCAGCTTGAGATAATCAACCTTGAA
TAGAGTTGAGTTTTTTGGTATCAGGCGCAGGCAGAACTGAAAGCTGGCAT
TCACATGGGTGGGTTTGGATTGCATAATATTCAGAGAGGTCCACCCAACC
TGTATTTTTTGCTACGACGACCAGTTTTACTGTTTTCTCTGTATATCGCT
GATTCTGACCAGCGCGCCACGAAACTTCTTGCATATATTCTATTTCGCAA
CTTCATACTTTCGTCACTATAGCACAAATTAGGAACTGTGTTTTTGTACG
ATTTGGAATTGACGATCACGGAGGATGTTTAGGTTGGGTTTAGGTACCTC
GTGGCATTAAGCAGGTTATGCCCAATGCAGCACACGAGTTTTCGCCAAAA
ACGGGTTAGGGGATGCTGTCCTTGCGATAGGGGCATGGTACAGGGCACGG
GTACATAACAGTCGATCCTTCGTTTTCGGGCAAAGGGATATGAGAGTGTA
TGCGCTGCCAGTGAGCACGTTGTGCTATCTTAGTATCAGTGGTATCTGTT
GAAAGAGGCGTCGTGAATTACTCAGGCTGAAAAAGGCGTGGATGCGGGGA
CTGATTGGTGGGTCGCAGACCCGAACGAAATAACAACAGTTGCTGGTCCA
CGCGTCTTATCATTACAAAGCAGACGTTGGTATAATATCGTTGATTCGGT
ACTTTTCTCTCTATCCGGCGTTACCCGGGGTGGGTTGGGTGTGAAAGAAA
TAGGGCTGGCTCGTTAGACTCGCCTCCTCCGCTCTCCTGTTGTCAAGCAA
GGCGGTCAGGTCAAGGACGACCACAAACTTACAGCAAACATCAACAACAT
GATACAACGACTAACTGCGCTATTTTTAATATTTCGAAATGAAAGTGGTA
CTCAGTATATGGTTTCGCCGAGAGGGAAGAAAACAGCAAACCGCTGATGA
TCTGTTGTTTGCTGCTGATGATGCTGTTGTAGCGGGCCGCTCGGTATTGC
CTTCATTCTCGGTGTTTGGTCCTAGGATAATAAGAAGACGCACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9820:2143..6836-

>mRNA_Ecto-sp8_S_contig9820.31610.1 ID=mRNA_Ecto-sp8_S_contig9820.31610.1|Name=mRNA_Ecto-sp8_S_contig9820.31610.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9820:2143..6836- (Ectocarpus species8 EcLAC_412)
ATGGCTCTGAGCAAAGGAGAGGTTCCGGTGGGCTGCGTCGTTGTGCATAA
GCCTACCGCGCGGGTTATCAGCTGTGGCCACAACGAAACTAGCGAAGCCT
TTAACGCTACCCGACATGCTGAACTTGTGGCCATCGACGGCATTCTACGA
GCACAGACCGATCTCTCCCTTTTAAGAGAATGTGACCTGTTTGTTACATG
TGAGCCGTGCATCATGTGTGCGGCAGCACTGCGCGATGTGAAGATCAAGA
CAGTCGTGTTCGGTTGCAGTAATGACCGATTTGGAGGCTGTGGGTCTGTG
CTCAGTGTTCATGACGGCAGTCTACCGATGTCAGGTCACACGTACCCGTG
CCATTCAGGACTTCTGGCGGACGAAGCAATTGCACTCTTCAAGCAATTCT
ATTCTAGGCAGAACGTTAAAGCACCAGAGCCCAAAAGAAGAAAGACGGGA
CGACAGGAGCAACCACGTGCGGAGACGAGATGA
back to top