mRNA_Ecto-sp8_S_contig9816.31605.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9816.31605.1
Unique NamemRNA_Ecto-sp8_S_contig9816.31605.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9816.31605.1 vs. uniprot
Match: D8LU64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU64_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.240e-58
Identity = 126/220 (57.27%), Postives = 127/220 (57.73%), Query Frame = 1 
Query:  205 GNPAGGFVRAGMGACTGHVRTTRSRGVPPGAGMGGVEHLRSRKRRSGSISAGASFSRTTRTPSVLPAEGTLAAMDTASSSSAAAPFTRRLRRVRVGHATVNVTSAATTAAGQKRAATCGVERTTRDLGVVSPSPLGLPRTSSTLARLMQQGGGKEAPGFDAAVRASAASSDGNTGGVEVAAVADAVDAGDDXXXXXXDGGAAHEDLSAWLHSTHDWWTSD 864
            GNP GG VRAG+GACTGHVRTTRSRGVPPGAGMGGVEHLRSRKRRSGSISAGASFS                                                                                         RLMQQGGGKEAPGFDAAVRASAASSDGNTGGVEVAAVADAVDAGDD  XXXXDGGAAHEDLSAWLHSTHDWWTSD
Sbjct:    2 GNPDGGVVRAGVGACTGHVRTTRSRGVPPGAGMGGVEHLRSRKRRSGSISAGASFS-----------------------------------------------------------------------------------------RLMQQGGGKEAPGFDAAVRASAASSDGNTGGVEVAAVADAVDAGDDDKXXXXDGGAAHEDLSAWLHSTHDWWTSD 132
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BLAST of mRNA_Ecto-sp8_S_contig9816.31605.1 vs. uniprot
Match: A0A6H5KGC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.370e-20
Identity = 57/75 (76.00%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:  646 MQQGGGKEAPGFDAAVRASAASSDGNT--GGVEVAAVADAVDAGDDXXXXXXDGGAAHEDLSAWLHSTHDWWTSD 864
            MQ+GGGK+APGFDAAVRASAASSDGN            DA+D GD XXXXXXD GAAHEDLSAWLHSTHDWWTSD
Sbjct:    1 MQEGGGKKAPGFDAAVRASAASSDGNARXXXXXXXXXPDAIDVGDXXXXXXXDEGAAHEDLSAWLHSTHDWWTSD 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9816.31605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU64_ECTSI2.240e-5857.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGC1_9PHAE4.370e-2076.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9816contigEcto-sp8_S_contig9816:455..1609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size867
Hectar predicted targeting categoryother localisation
Exons2
Cds size867
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145348.4394586-CDS-Ecto-sp8_S_contig9816:454..8281681145348.4394586-CDS-Ecto-sp8_S_contig9816:454..828Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9816 455..828 +
1681145348.4681783-CDS-Ecto-sp8_S_contig9816:1116..16091681145348.4681783-CDS-Ecto-sp8_S_contig9816:1116..1609Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9816 1117..1609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9816.31605.1prot_Ecto-sp8_S_contig9816.31605.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9816 455..1609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9816.31605.1

>prot_Ecto-sp8_S_contig9816.31605.1 ID=prot_Ecto-sp8_S_contig9816.31605.1|Name=mRNA_Ecto-sp8_S_contig9816.31605.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=289bp
MDSLADGVSSLGVASPDAAAAGSGSSSGSWNQADAPRTPHGCTWRRDSFG
GQTDGSSQTLCPVSALVRGNPAGGFVRAGMGACTGHVRTTRSRGVPPGAG
MGGVEHLRSRKRRSGSISAGASFSRTTRTPSVLPAEGTLAAMDTASSSSA
AAPFTRRLRRVRVGHATVNVTSAATTAAGQKRAATCGVERTTRDLGVVSP
SPLGLPRTSSTLARLMQQGGGKEAPGFDAAVRASAASSDGNTGGVEVAAV
ADAVDAGDDDKSSSSDGGAAHEDLSAWLHSTHDWWTSD*
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mRNA from alignment at Ecto-sp8_S_contig9816:455..1609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9816.31605.1 ID=mRNA_Ecto-sp8_S_contig9816.31605.1|Name=mRNA_Ecto-sp8_S_contig9816.31605.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1155bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9816:455..1609+ (Ectocarpus species8 EcLAC_412)
ATGGATTCCTTGGCCGACGGGGTTAGCAGTCTAGGGGTCGCTTCCCCCGA
TGCTGCTGCTGCCGGTAGTGGCAGCAGCAGTGGCAGTTGGAATCAGGCTG
ACGCACCAAGGACGCCGCATGGGTGCACATGGCGGCGAGATAGCTTCGGC
GGTCAGACGGACGGCTCTTCTCAGACGCTGTGTCCGGTGTCAGCTCTCGT
CAGGGGCAACCCGGCCGGCGGCTTTGTGAGGGCTGGCATGGGCGCTTGCA
CCGGGCACGTTAGGACTACGAGGTCTCGCGGGGTGCCGCCTGGTGCTGGC
ATGGGAGGCGTCGAGCATTTGCGGTCGAGAAAGCGCAGGAGCGGCTCCAT
CTCGGCGGGGGCATCGTTTTCCCGGTGAGAGAGGTCTAAAATATATTATG
TACTGTAATCGTTGCGGCGGGAAGCAATCTGTACATGTATGGTTCTTTCC
GCTGTTTTCCGTGCCTGTACTGCTTGCGAGGTAGAGAAGCCGCCGGTGTC
TATGTCTGTTGGCCCCCTTTTACGAAGCAAAGGATTCCTGAAACCTGTGT
GTTTCTGCGTGTGAAAATTTAGGCGCTATTTCGTAGAGACACCTGTCTGT
GCAAAGGAACACAACAACTCACTACAGTACTGCTTTCAACAACTCTTTTT
CTTGTCCCCTAGGACCACCCGAACACCTTCAGTGCTACCAGCCGAAGGAA
CCTTGGCCGCCATGGACACAGCATCATCGTCATCAGCAGCAGCCCCGTTT
ACGCGACGGCTGAGGCGCGTCCGCGTCGGGCACGCCACCGTCAACGTCAC
CAGCGCTGCCACAACCGCTGCTGGCCAGAAGAGGGCAGCCACCTGCGGCG
TGGAGAGAACAACGAGAGATCTTGGCGTGGTTTCTCCTTCGCCGCTGGGC
CTTCCCCGTACCTCCTCCACTCTCGCCAGGTTGATGCAGCAGGGTGGCGG
GAAAGAAGCGCCAGGATTTGACGCGGCTGTCCGTGCCTCTGCTGCATCTT
CTGACGGCAACACCGGCGGGGTAGAGGTGGCGGCGGTGGCGGATGCGGTA
GACGCTGGCGACGACGACAAGAGCAGCAGCAGCGACGGGGGGGCCGCTCA
CGAAGACTTGTCGGCGTGGCTACACAGCACGCATGACTGGTGGACATCTG
ACTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9816:455..1609+

>mRNA_Ecto-sp8_S_contig9816.31605.1 ID=mRNA_Ecto-sp8_S_contig9816.31605.1|Name=mRNA_Ecto-sp8_S_contig9816.31605.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=867bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9816:455..1609+ (Ectocarpus species8 EcLAC_412)
ATGGATTCCTTGGCCGACGGGGTTAGCAGTCTAGGGGTCGCTTCCCCCGA
TGCTGCTGCTGCCGGTAGTGGCAGCAGCAGTGGCAGTTGGAATCAGGCTG
ACGCACCAAGGACGCCGCATGGGTGCACATGGCGGCGAGATAGCTTCGGC
GGTCAGACGGACGGCTCTTCTCAGACGCTGTGTCCGGTGTCAGCTCTCGT
CAGGGGCAACCCGGCCGGCGGCTTTGTGAGGGCTGGCATGGGCGCTTGCA
CCGGGCACGTTAGGACTACGAGGTCTCGCGGGGTGCCGCCTGGTGCTGGC
ATGGGAGGCGTCGAGCATTTGCGGTCGAGAAAGCGCAGGAGCGGCTCCAT
CTCGGCGGGGGCATCGTTTTCCCGGACCACCCGAACACCTTCAGTGCTAC
CAGCCGAAGGAACCTTGGCCGCCATGGACACAGCATCATCGTCATCAGCA
GCAGCCCCGTTTACGCGACGGCTGAGGCGCGTCCGCGTCGGGCACGCCAC
CGTCAACGTCACCAGCGCTGCCACAACCGCTGCTGGCCAGAAGAGGGCAG
CCACCTGCGGCGTGGAGAGAACAACGAGAGATCTTGGCGTGGTTTCTCCT
TCGCCGCTGGGCCTTCCCCGTACCTCCTCCACTCTCGCCAGGTTGATGCA
GCAGGGTGGCGGGAAAGAAGCGCCAGGATTTGACGCGGCTGTCCGTGCCT
CTGCTGCATCTTCTGACGGCAACACCGGCGGGGTAGAGGTGGCGGCGGTG
GCGGATGCGGTAGACGCTGGCGACGACGACAAGAGCAGCAGCAGCGACGG
GGGGGCCGCTCACGAAGACTTGTCGGCGTGGCTACACAGCACGCATGACT
GGTGGACATCTGACTGA
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