mRNA_Ecto-sp8_S_contig9814.31602.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9814.31602.1
Unique NamemRNA_Ecto-sp8_S_contig9814.31602.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9814.31602.1 vs. uniprot
Match: D7FR79_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR79_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 6.530e-40
Identity = 94/101 (93.07%), Postives = 94/101 (93.07%), Query Frame = 1 
Query:    1 CPTTPPFLTSLLAAAADTSASTDTPSTAAATAARPVPRSPPATLRSGEGKGIDNSGERGEVLRLWRKRNENLTLEEMEWLVLWVRRTQSTRRQRQQQ*RRR 303
            CPTT P LTSLLA AADT ASTDTPSTAA TAARPVPRSPPATLRSG GKGIDNSGERGEVLRLWRKRNENLTLEEMEWLVLWVRRTQSTRRQRQQQ RRR
Sbjct:  574 CPTTLPSLTSLLAGAADTCASTDTPSTAA-TAARPVPRSPPATLRSGGGKGIDNSGERGEVLRLWRKRNENLTLEEMEWLVLWVRRTQSTRRQRQQQSRRR 673
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BLAST of mRNA_Ecto-sp8_S_contig9814.31602.1 vs. uniprot
Match: A0A6H5JF78_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF78_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.910e-33
Identity = 85/100 (85.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    4 PTTPPFLTSLLAAAA----DTSASTDTPSTAAATAARPVPRSPPATLRSGEGKGIDNSGERGEVLRLWRKRNENLTLEEMEWLVLWVRRTQSTRRQRQQQ 291
            PT PP LTSLLAA A    DT A+TD PS AA TAARPVPRSPPATLRSGEG+G DNSGERGEVLRLWRKRNENLTLEEMEWLVLWVRR QSTRRQRQQQ
Sbjct:  695 PTAPPSLTSLLAATATATADTCATTDPPSVAA-TAARPVPRSPPATLRSGEGRGFDNSGERGEVLRLWRKRNENLTLEEMEWLVLWVRRMQSTRRQRQQQ 793
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9814.31602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR79_ECTSI6.530e-4093.07BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JF78_9PHAE1.910e-3385.00BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9814contigEcto-sp8_S_contig9814:1025..3134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1659
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145348.2133188-CDS-Ecto-sp8_S_contig9814:1024..12601681145348.2133188-CDS-Ecto-sp8_S_contig9814:1024..1260Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9814 1025..1260 +
1681145348.225683-CDS-Ecto-sp8_S_contig9814:1712..17701681145348.225683-CDS-Ecto-sp8_S_contig9814:1712..1770Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9814 1713..1770 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145348.2366111-UTR-Ecto-sp8_S_contig9814:1770..31341681145348.2366111-UTR-Ecto-sp8_S_contig9814:1770..3134Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9814 1771..3134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9814.31602.1prot_Ecto-sp8_S_contig9814.31602.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9814 1025..1770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9814.31602.1

>prot_Ecto-sp8_S_contig9814.31602.1 ID=prot_Ecto-sp8_S_contig9814.31602.1|Name=mRNA_Ecto-sp8_S_contig9814.31602.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=98bp
CPTTPPFLTSLLAAAADTSASTDTPSTAAATAARPVPRSPPATLRSGEGK
GIDNSGERGEVLRLWRKRNENLTLEEMEWLVLWVRRTQSTRRQRQQQ*
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mRNA from alignment at Ecto-sp8_S_contig9814:1025..3134+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9814.31602.1 ID=mRNA_Ecto-sp8_S_contig9814.31602.1|Name=mRNA_Ecto-sp8_S_contig9814.31602.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2110bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9814:1025..3134+ (Ectocarpus species8 EcLAC_412)
TGTCCGACGACGCCTCCTTTCCTCACCAGCCTCTTGGCCGCTGCCGCTGA
TACTTCTGCTTCCACCGATACTCCCTCTACTGCCGCCGCCACCGCCGCCC
GGCCTGTGCCACGATCACCACCGGCGACCTTGCGATCCGGGGAGGGGAAG
GGTATTGACAATAGCGGGGAGAGGGGAGAGGTTTTACGGCTGTGGCGCAA
GCGAAACGAAAACTTGACGCTAGAGGAGATGGAGTGGTGAGTTGCTTGTG
AACTACAGTGGTGAGTTGCTTGTGAACTACAGTGGTGAGTTGCTTGTGAA
CTACAGTGGTGAGTTGCTTGTGAACTACAGTGGTGAGTTGCTTGTGAACT
ACAGTGGTGAGTAGTTGCTTGTGAACTATTAATACCATTGGCTCTCTAGG
ACGTGAGTCTGCCCGATGTTGTCGCGAATAAATTTCGACTCGCCCCTGCT
TCTTGAACTGTTCTTCAAAGGTCGAGTTCTTTGATTTCGTTCTTCTTTTG
AGCCTGGGTTTCTTAGCTCCTGGCTTCTTGCAAGTGGAGGCGCCTTTACC
GTAGCCGACGGGGATTGGGGAACGGTTTCATTTGAGAAAACAGTCATTCG
TGAGACTAATATTGTGTGGAATAAACCGAAGAATCAAATCCCCCCCCTCC
CGCCGCCCCCACCGGTTGTTTGTTTTTCGTGCGCGCAGGTTAGTGCTCTG
GGTTAGGCGTACGCAAAGTACGCGGCGGCAGCGACAGCAACAGTAACGAA
GAAGATAATGCAGCGGCGGCATCAGGGCTATTGGCGGCGACATGAAAATT
GGTCGATCAGAAAATTGCGGGCCATTTTCTCTCTCACTCTCTTGAGTAGC
ACCGGCACGGGCAGTGATATATGCATGTGATTTGCAGTGCGTGCAAGCGA
TACTGCACTAGGGTGCGCACCATGCGGGATTTGTCGCTTCGTTGGGAGAA
ATAGTGGTAGCAATACGAAAACGTTGGAAACGGTTTCTGTCCAATCAGGT
GTTATGCTGTGTGAACTATGCAAACGCGGGAAATATTTGTCTTTGGGTGG
TGTAATTTTTTTTTTGTGACTGTTGGTGTTGTCGTTGCAAATTACTACAA
TTTACTACTTGTTCATGAGAGGCAGCTGTGTTGTCTTGTGACAGCCAACT
GCTCGCGGTGTCGTGTGGAAGACCTCGAAGGGTGTGGGAGGCGGACAAAA
GTGTAAAAAAAGGATGCTCGTTGTCGTGTTTGTCGTGTGATAACCGTTGT
TGTTCAGGTCGCGTTCGTCTGCCTCAGCTGCTGAAACGAAACTCCATCCT
ACTCACTCACTCACTCACGATTTTGAGATCGTTCCAGCTGCCGCCTCGGC
GGAACAAAGTCTCATGTTTTTGTCCCCGCACTCCGTTTTGTCAAGTAAGG
GGAGGGTTCTCTCACCACGGTTGTGAAGCAGCAGGTCGCACTTGGTACCT
ATCCCATGTAAAACATGTCGCACCTGCCGAACCGGGACCGAGCCCATTTG
CCCAGGTCTCGCTGACCTGTCGGGCGTGTTGGCATGGGCGGTGTGAGTCT
GATCGTAGCTCACACCACGCACTTCCATGTAGTGTCGACACCAATGACCT
GTATCGAGAGTGTAACTGTACTGATGCGGTACTCACGGGTGGGGAACGGT
ACGTGGTGATTTTACACGAGACGGGGTTGCGCAGGTATTTAGTGCGGAAG
CGCGCGGGAGGACAACCGTAGCACAATATTCGATTTGTTGGCCAGGACTT
TTGGGCGGATGCTTCATGGCACTAAATAGTGTAAATTTCTGTTTTGCCTC
GTGCTTGACTGTTTCTCCGTGTCGTACGGTGCGAAAGCCGGCACTAAGTA
CCCTAGGAAAAAATGGATGAGTGAAGGTGTTGGCCAGGTTGTGTGGCTTT
AAAGCAAAATCGATGTTCCAGCAAGCAGCCCCGGCGTTCTGGTCCACATC
GTCTGGTCTGTTTGTTTGGTTGCCGAGGGGAGAACGAGACAAAAACTGGT
CCGAAAGTGAGATGGTCGGCTGTACTGTGCGGTTCGGGAATACCCTTCTC
GAAGGCAAGCACCACAGGGGTCCAAGGTGGAGCACAAACGAAGGACGAAA
AGAACAAACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9814:1025..3134+

>mRNA_Ecto-sp8_S_contig9814.31602.1 ID=mRNA_Ecto-sp8_S_contig9814.31602.1|Name=mRNA_Ecto-sp8_S_contig9814.31602.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9814:1025..3134+ (Ectocarpus species8 EcLAC_412)
TGTCCGACGACGCCTCCTTTCCTCACCAGCCTCTTGGCCGCTGCCGCTGA
TACTTCTGCTTCCACCGATACTCCCTCTACTGCCGCCGCCACCGCCGCCC
GGCCTGTGCCACGATCACCACCGGCGACCTTGCGATCCGGGGAGGGGAAG
GGTATTGACAATAGCGGGGAGAGGGGAGAGGTTTTACGGCTGTGGCGCAA
GCGAAACGAAAACTTGACGCTAGAGGAGATGGAGTGGTTAGTGCTCTGGG
TTAGGCGTACGCAAAGTACGCGGCGGCAGCGACAGCAACAGTAA
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