mRNA_Ecto-sp8_S_contig9810.31598.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE) HSP 1 Score: 478 bits (1229), Expect = 1.220e-161 Identity = 328/378 (86.77%), Postives = 330/378 (87.30%), Query Frame = 1
Query: 64 MAGSSSGCPVQHAPKESSSMPAAAAAATGNESTASATEPEQGSGRRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SGCPVQHGSATTSTAAPAEGLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1194
MAG SSGCPVQHAPKESS PAA AAA GNESTAS TE EQ SGRRWSSRVAAWLPFRQG XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX SGCPV+HGSA TSTAAPAEGLGRVWGYLTGSIGGA APELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGW+MVQEWERA XXXXXXXXXXXXXXXXX PKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD
Sbjct: 1 MAGRSSGCPVQHAPKESSPTPAATAAA-GNESTAS-TESEQASGRRWSSRVAAWLPFRQGGXXXXXXXXXXXXXXXXXXXXXXVQGSAAWRGTKEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCPVEHGSAATSTAAPAEGLGRVWGYLTGSIGGAGGSGEVSSATAPAPAAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 376
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI) HSP 1 Score: 431 bits (1109), Expect = 4.690e-143 Identity = 337/384 (87.76%), Postives = 338/384 (88.02%), Query Frame = 1
Query: 157 STASATEPEQGSGRRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-GCPVQHGSATTSTAAPAEGLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXX-------------------------------------PKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1194
STASATEPEQGSG RWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GCPVQHGSA TSTAAPA GLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGW+MVQEWERAHAE XXXXXXXXXXXXXXXXXXXX PKL RFTGRPQDTSPKAWVKSTL GYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD
Sbjct: 16 STASATEPEQGSGGRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCPVQHGSAATSTAAPAGGLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 399
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA) HSP 1 Score: 203 bits (516), Expect = 6.450e-58 Identity = 109/201 (54.23%), Postives = 128/201 (63.68%), Query Frame = 1
Query: 592 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1194
+ + ++E V G Q VPLST+RQ S+IPK E P HQP+ A WVYPSEQQY+NA+KRKG++A D+P LAIHNAVNE+GW V+EWE PKL F GRP D SPKAW K+ +LGY+PPFDRHDWVV+ A G E RYVIDFYAGK P PVA+HLDVRPALDS D
Sbjct: 1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRG---------------------GDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSAD 176
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA) HSP 1 Score: 196 bits (499), Expect = 3.760e-54 Identity = 107/198 (54.04%), Postives = 123/198 (62.12%), Query Frame = 1
Query: 598 NARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKA-WVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDS 1188
N NNE Y Q Q VPLSTSR+ SSIPK++F P HQP+ +KWVYPSEQQY+NA+K KG+ D+ LAIHNAVNE+GW V EWE PKL RF GRPQD SPKA W+ + GY PFDRHDWVV+RADG+E RYVIDFY G+ PV+MHLDVRPALDS
Sbjct: 80 NPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTP--------------------PKLKRFMGRPQDLSPKAAWL--WMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDS 255
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA) HSP 1 Score: 191 bits (486), Expect = 9.370e-53 Identity = 101/201 (50.25%), Postives = 123/201 (61.19%), Query Frame = 1
Query: 592 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAG--KAPPGSSMPVAMHLDVRPALDS 1188
LYN N++V+ Q A Q+ LS R S+IPK +F P+HQP K EKWVYPSEQQYYNA+KRKGY S AD+P+ L IHN VNEKGW V+EWE PKL +F G+P SPKA + + ++GY PFDRHDW+V+R DG E RYVIDFY G P PV+++LDVRPA DS
Sbjct: 61 LYNTNANDFVFDQSRTADQKANLSVKRATSTIPKGDFTPEHQP-KATEKWVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSG--------------------FPNPKLKKFMGKPTQLSPKARLLN-MIGYSKPFDRHDWIVERPDGQEVRYVIDFYGGARNINPSKPQPVSIYLDVRPAADS 239
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A7S4DXX3_9EUKA (Holocytochrome c-type synthase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXX3_9EUKA) HSP 1 Score: 170 bits (430), Expect = 1.070e-45 Identity = 91/183 (49.73%), Postives = 114/183 (62.30%), Query Frame = 1
Query: 643 GQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSY 1191
GQ +PL T R S+IPK +F P HQ + +A W YPS QQ+YNA+KRKGY+ DM S +AIHN VNEK W V EWE+ H + P+L +F+GR D S KA + +T +GYRPPFDRHDWVV R G + RYVIDFY G P + MP+++HLDVRPA DS+
Sbjct: 31 GQRMPLPTHRVESTIPKGDFKPSHQLEGKAN-WTYPSPQQFYNAMKRKGYQPKEEDMQSVVAIHNTVNEKTWKKVMEWEKMHLDKCPN------------------PRLEKFSGRANDQSLKARI-NTWMGYRPPFDRHDWVVDRC-GKKVRYVIDFYTG--PSMTGMPLSIHLDVRPAADSF 190
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A2R5GNK2_9STRA (Holocytochrome c-type synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNK2_9STRA) HSP 1 Score: 169 bits (429), Expect = 2.200e-44 Identity = 92/184 (50.00%), Postives = 113/184 (61.41%), Query Frame = 1
Query: 643 GQEVPLSTSRQRSSIPKAEFNPDHQPQ-KEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSY 1191
GQ PLST+R S IPK EF+PDHQ +E+ W+YPSEQQ++NA+KRKG+K DM LAIHN VN+K W V ++E H E PKL+RF G+P++ SPKA V+S GY PFDRHDW+V R GTE RYVIDFY G V+M+LD RPALDS+
Sbjct: 83 GQRFPLSTNRVESVIPKGEFSPDHQKHSRESSSWMYPSEQQFFNAMKRKGWKPREEDMRIVLAIHNHVNDKAWSEVSKYESMHPECDC-------------------PKLVRFMGKPKNLSPKATVRS-WFGYAKPFDRHDWIVDRC-GTEVRYVIDFYQGAQTSNPGEVVSMYLDARPALDSW 245
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A7S0WSL6_9CHLO (Holocytochrome c-type synthase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WSL6_9CHLO) HSP 1 Score: 166 bits (420), Expect = 1.050e-43 Identity = 93/187 (49.73%), Postives = 112/187 (59.89%), Query Frame = 1
Query: 628 QEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDS 1188
Q ++ Q +PLS R S+IPK EF P HQ K WVYPSEQ +YNA+KRKG++ + DMPS +AIHNAVNE+ W + WE HA P L +F GRP+D SPKA + + LGY+ PFDRHDW V R G E RYVIDFY PG P+AMHLDVRPALD+
Sbjct: 53 QAASSDQRIPLSIERVASTIPKDEFTPSHQ-SKTDPVWVYPSEQMFYNAMKRKGWQPNEVDMPSVVAIHNAVNERCWHEILTWEHLHASACPS------------------PTLNKFEGRPKDYSPKARLLN-WLGYKLPFDRHDWYVNRC-GEEVRYVIDFYNAAPQPG--QPIAMHLDVRPALDT 216
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A7S0WA24_9CRYP (Holocytochrome c-type synthase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WA24_9CRYP) HSP 1 Score: 163 bits (413), Expect = 2.810e-43 Identity = 96/202 (47.52%), Postives = 122/202 (60.40%), Query Frame = 1
Query: 604 RNNEYVYGQEVAAG--QEVPLSTSRQRSSIPKAEFNPDHQPQK-EAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWER-AHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDG 1197
RNN G+ G Q PLST+R SSIPK +F P HQ + + E+WVYPSEQ ++NA++RKG+ DM S +A+HNAVNE+ W+ V WER H E P+L+RF GRP+D SP+A + S LLGY+ PFDRHDW V R G + RYVIDFY GK PP PV+ ++VRPALD +G
Sbjct: 4 RNNMRKGGESQYPGLNQSRPLSTARVESSIPKDDFTPAHQAENSQKERWVYPSEQMFFNAMQRKGWNPKEDDMSSVVALHNAVNEQTWNEVLRWERDLHPECPQ-------------------PRLVRFYGRPKDFSPRARIFS-LLGYKLPFDRHDWTVDRC-GKQVRYVIDFYHGK-PPADGRPVSFFIEVRPALDDAEG 183
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A7J7Q1K7_9CHLO (Holocytochrome c-type synthase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q1K7_9CHLO) HSP 1 Score: 160 bits (406), Expect = 1.890e-42 Identity = 93/185 (50.27%), Postives = 113/185 (61.08%), Query Frame = 1
Query: 637 AAGQEVPLSTSRQRSSIPKAEFN-PDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDS 1188
AA L+T RQRSSIP A P HQ Q A+ W+YPSEQQ+YNA+KRKG+ + DM +AIHN VNE+ W V WE HA P+L+RF GRP D SPKA + + +LG++ PFDRHDW+V R G E RYVIDFY+G PG +P +MHLDVRPALDS
Sbjct: 7 AAASSSNLNTQRQRSSIPIAASQLPQHQ-QDGADVWMYPSEQQFYNAMKRKGWDPAEPDMQRVVAIHNTVNERAWRHVLAWEALHAADCGQP-----------------PRLVRFQGRPSDFSPKARLLN-MLGFKLPFDRHDWIVDRC-GREVRYVIDFYSGAPQPG--VPASMHLDVRPALDS 169 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9810.31598.1 >prot_Ecto-sp8_S_contig9810.31598.1 ID=prot_Ecto-sp8_S_contig9810.31598.1|Name=mRNA_Ecto-sp8_S_contig9810.31598.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=436bp MAGSSSGCPVQHAPKESSSMPAAAAAATGNESTASATEPEQGSGRRWSSRback to top mRNA from alignment at Ecto-sp8_S_contig9810:2936..6627+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9810.31598.1 ID=mRNA_Ecto-sp8_S_contig9810.31598.1|Name=mRNA_Ecto-sp8_S_contig9810.31598.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3692bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9810:2936..6627+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9810:2936..6627+ >mRNA_Ecto-sp8_S_contig9810.31598.1 ID=mRNA_Ecto-sp8_S_contig9810.31598.1|Name=mRNA_Ecto-sp8_S_contig9810.31598.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9810:2936..6627+ (Ectocarpus species8 EcLAC_412)back to top |