mRNA_Ecto-sp8_S_contig9810.31598.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9810.31598.1
Unique NamemRNA_Ecto-sp8_S_contig9810.31598.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE)

HSP 1 Score: 478 bits (1229), Expect = 1.220e-161
Identity = 328/378 (86.77%), Postives = 330/378 (87.30%), Query Frame = 1
Query:   64 MAGSSSGCPVQHAPKESSSMPAAAAAATGNESTASATEPEQGSGRRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SGCPVQHGSATTSTAAPAEGLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1194
            MAG SSGCPVQHAPKESS  PAA AAA GNESTAS TE EQ SGRRWSSRVAAWLPFRQG XXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXXXXXX SGCPV+HGSA TSTAAPAEGLGRVWGYLTGSIGGA               APELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGW+MVQEWERA   XXXXXXXXXXXXXXXXX     PKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD
Sbjct:    1 MAGRSSGCPVQHAPKESSPTPAATAAA-GNESTAS-TESEQASGRRWSSRVAAWLPFRQGGXXXXXXXXXXXXXXXXXXXXXXVQGSAAWRGTKEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCPVEHGSAATSTAAPAEGLGRVWGYLTGSIGGAGGSGEVSSATAPAPAAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 376          
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI)

HSP 1 Score: 431 bits (1109), Expect = 4.690e-143
Identity = 337/384 (87.76%), Postives = 338/384 (88.02%), Query Frame = 1
Query:  157 STASATEPEQGSGRRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-GCPVQHGSATTSTAAPAEGLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXX-------------------------------------PKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1194
            STASATEPEQGSG RWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GCPVQHGSA TSTAAPA GLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGW+MVQEWERAHAE  XXXXXXXXXXXXXXXXXXXX                                     PKL RFTGRPQDTSPKAWVKSTL GYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD
Sbjct:   16 STASATEPEQGSGGRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCPVQHGSAATSTAAPAGGLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 399          
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA)

HSP 1 Score: 203 bits (516), Expect = 6.450e-58
Identity = 109/201 (54.23%), Postives = 128/201 (63.68%), Query Frame = 1
Query:  592 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1194
            + +  ++E V G      Q VPLST+RQ S+IPK E  P HQP+  A  WVYPSEQQY+NA+KRKG++A   D+P  LAIHNAVNE+GW  V+EWE                           PKL  F GRP D SPKAW K+ +LGY+PPFDRHDWVV+ A G E RYVIDFYAGK  P    PVA+HLDVRPALDS D
Sbjct:    1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRG---------------------GDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSAD 176          
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA)

HSP 1 Score: 196 bits (499), Expect = 3.760e-54
Identity = 107/198 (54.04%), Postives = 123/198 (62.12%), Query Frame = 1
Query:  598 NARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKA-WVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDS 1188
            N  NNE  Y Q     Q VPLSTSR+ SSIPK++F P HQP+   +KWVYPSEQQY+NA+K KG+     D+   LAIHNAVNE+GW  V EWE                           PKL RF GRPQD SPKA W+   + GY  PFDRHDWVV+RADG+E RYVIDFY G+       PV+MHLDVRPALDS
Sbjct:   80 NPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTP--------------------PKLKRFMGRPQDLSPKAAWL--WMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDS 255          
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 9.370e-53
Identity = 101/201 (50.25%), Postives = 123/201 (61.19%), Query Frame = 1
Query:  592 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAG--KAPPGSSMPVAMHLDVRPALDS 1188
            LYN   N++V+ Q   A Q+  LS  R  S+IPK +F P+HQP K  EKWVYPSEQQYYNA+KRKGY  S AD+P+ L IHN VNEKGW  V+EWE                           PKL +F G+P   SPKA + + ++GY  PFDRHDW+V+R DG E RYVIDFY G     P    PV+++LDVRPA DS
Sbjct:   61 LYNTNANDFVFDQSRTADQKANLSVKRATSTIPKGDFTPEHQP-KATEKWVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSG--------------------FPNPKLKKFMGKPTQLSPKARLLN-MIGYSKPFDRHDWIVERPDGQEVRYVIDFYGGARNINPSKPQPVSIYLDVRPAADS 239          
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A7S4DXX3_9EUKA (Holocytochrome c-type synthase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXX3_9EUKA)

HSP 1 Score: 170 bits (430), Expect = 1.070e-45
Identity = 91/183 (49.73%), Postives = 114/183 (62.30%), Query Frame = 1
Query:  643 GQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSY 1191
            GQ +PL T R  S+IPK +F P HQ + +A  W YPS QQ+YNA+KRKGY+    DM S +AIHN VNEK W  V EWE+ H +                      P+L +F+GR  D S KA + +T +GYRPPFDRHDWVV R  G + RYVIDFY G  P  + MP+++HLDVRPA DS+
Sbjct:   31 GQRMPLPTHRVESTIPKGDFKPSHQLEGKAN-WTYPSPQQFYNAMKRKGYQPKEEDMQSVVAIHNTVNEKTWKKVMEWEKMHLDKCPN------------------PRLEKFSGRANDQSLKARI-NTWMGYRPPFDRHDWVVDRC-GKKVRYVIDFYTG--PSMTGMPLSIHLDVRPAADSF 190          
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A2R5GNK2_9STRA (Holocytochrome c-type synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNK2_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.200e-44
Identity = 92/184 (50.00%), Postives = 113/184 (61.41%), Query Frame = 1
Query:  643 GQEVPLSTSRQRSSIPKAEFNPDHQPQ-KEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSY 1191
            GQ  PLST+R  S IPK EF+PDHQ   +E+  W+YPSEQQ++NA+KRKG+K    DM   LAIHN VN+K W  V ++E  H E                      PKL+RF G+P++ SPKA V+S   GY  PFDRHDW+V R  GTE RYVIDFY G         V+M+LD RPALDS+
Sbjct:   83 GQRFPLSTNRVESVIPKGEFSPDHQKHSRESSSWMYPSEQQFFNAMKRKGWKPREEDMRIVLAIHNHVNDKAWSEVSKYESMHPECDC-------------------PKLVRFMGKPKNLSPKATVRS-WFGYAKPFDRHDWIVDRC-GTEVRYVIDFYQGAQTSNPGEVVSMYLDARPALDSW 245          
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A7S0WSL6_9CHLO (Holocytochrome c-type synthase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WSL6_9CHLO)

HSP 1 Score: 166 bits (420), Expect = 1.050e-43
Identity = 93/187 (49.73%), Postives = 112/187 (59.89%), Query Frame = 1
Query:  628 QEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDS 1188
            Q  ++ Q +PLS  R  S+IPK EF P HQ  K    WVYPSEQ +YNA+KRKG++ +  DMPS +AIHNAVNE+ W  +  WE  HA                       P L +F GRP+D SPKA + +  LGY+ PFDRHDW V R  G E RYVIDFY     PG   P+AMHLDVRPALD+
Sbjct:   53 QAASSDQRIPLSIERVASTIPKDEFTPSHQ-SKTDPVWVYPSEQMFYNAMKRKGWQPNEVDMPSVVAIHNAVNERCWHEILTWEHLHASACPS------------------PTLNKFEGRPKDYSPKARLLN-WLGYKLPFDRHDWYVNRC-GEEVRYVIDFYNAAPQPG--QPIAMHLDVRPALDT 216          
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A7S0WA24_9CRYP (Holocytochrome c-type synthase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WA24_9CRYP)

HSP 1 Score: 163 bits (413), Expect = 2.810e-43
Identity = 96/202 (47.52%), Postives = 122/202 (60.40%), Query Frame = 1
Query:  604 RNNEYVYGQEVAAG--QEVPLSTSRQRSSIPKAEFNPDHQPQK-EAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWER-AHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDG 1197
            RNN    G+    G  Q  PLST+R  SSIPK +F P HQ +  + E+WVYPSEQ ++NA++RKG+     DM S +A+HNAVNE+ W+ V  WER  H E                      P+L+RF GRP+D SP+A + S LLGY+ PFDRHDW V R  G + RYVIDFY GK PP    PV+  ++VRPALD  +G
Sbjct:    4 RNNMRKGGESQYPGLNQSRPLSTARVESSIPKDDFTPAHQAENSQKERWVYPSEQMFFNAMQRKGWNPKEDDMSSVVALHNAVNEQTWNEVLRWERDLHPECPQ-------------------PRLVRFYGRPKDFSPRARIFS-LLGYKLPFDRHDWTVDRC-GKQVRYVIDFYHGK-PPADGRPVSFFIEVRPALDDAEG 183          
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Match: A0A7J7Q1K7_9CHLO (Holocytochrome c-type synthase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q1K7_9CHLO)

HSP 1 Score: 160 bits (406), Expect = 1.890e-42
Identity = 93/185 (50.27%), Postives = 113/185 (61.08%), Query Frame = 1
Query:  637 AAGQEVPLSTSRQRSSIPKAEFN-PDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWDMVQEWERAHAEXXXXXXXXXXXXXXXXXXXXXXPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDS 1188
            AA     L+T RQRSSIP A    P HQ Q  A+ W+YPSEQQ+YNA+KRKG+  +  DM   +AIHN VNE+ W  V  WE  HA                       P+L+RF GRP D SPKA + + +LG++ PFDRHDW+V R  G E RYVIDFY+G   PG  +P +MHLDVRPALDS
Sbjct:    7 AAASSSNLNTQRQRSSIPIAASQLPQHQ-QDGADVWMYPSEQQFYNAMKRKGWDPAEPDMQRVVAIHNTVNERAWRHVLAWEALHAADCGQP-----------------PRLVRFQGRPSDFSPKARLLN-MLGFKLPFDRHDWIVDRC-GREVRYVIDFYSGAPQPG--VPASMHLDVRPALDS 169          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9810.31598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L219_9PHAE1.220e-16186.77Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
D8LGP6_ECTSI4.690e-14387.76Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
A0A835ZPE3_9STRA6.450e-5854.23Holocytochrome c-type synthase n=1 Tax=Tribonema m... [more]
W7TBT6_9STRA3.760e-5454.04Holocytochrome c-type synthase n=2 Tax=Monodopsida... [more]
A0A7S3HNG9_9STRA9.370e-5350.25Holocytochrome c-type synthase n=1 Tax=Spumella el... [more]
A0A7S4DXX3_9EUKA1.070e-4549.73Holocytochrome c-type synthase n=1 Tax=Lotharella ... [more]
A0A2R5GNK2_9STRA2.200e-4450.00Holocytochrome c-type synthase n=1 Tax=Hondaea fer... [more]
A0A7S0WSL6_9CHLO1.050e-4349.73Holocytochrome c-type synthase n=1 Tax=Pyramimonas... [more]
A0A7S0WA24_9CRYP2.810e-4347.52Holocytochrome c-type synthase n=1 Tax=Hemiselmis ... [more]
A0A7J7Q1K7_9CHLO1.890e-4250.27Holocytochrome c-type synthase n=1 Tax=Scenedesmus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9810contigEcto-sp8_S_contig9810:2936..6627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score436.0
Seed ortholog evalue2e-119
Seed eggNOG ortholog2880.D8LGP6
Preferred nameHCCS
Model size1823
KEGG rclassRC00727,RC02130
KEGG koko:K01764
KEGG ReactionR02480
KEGG Pathwayko00860,map00860
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004408,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006464,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009887,GO:0009987,GO:0016020,GO:0016043,GO:0016829,GO:0016846,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:1901564
Exons4
EggNOG free text desc.holocytochrome-c synthase activity
EggNOG OGsKOG3996@1,KOG3996@2759
Ec32 ortholog descriptionCytochrome c/c1 haem-lyase
Ec32 orthologEc-10_003030.1
EC4.4.1.17
Cds size1308
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9810.31598.1prot_Ecto-sp8_S_contig9810.31598.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9810 2999..6175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145347.9060717-UTR-Ecto-sp8_S_contig9810:2935..29981681145347.9060717-UTR-Ecto-sp8_S_contig9810:2935..2998Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9810 2936..2998 +
1681145347.9868188-UTR-Ecto-sp8_S_contig9810:6175..66271681145347.9868188-UTR-Ecto-sp8_S_contig9810:6175..6627Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9810 6176..6627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145347.9220166-CDS-Ecto-sp8_S_contig9810:2998..36581681145347.9220166-CDS-Ecto-sp8_S_contig9810:2998..3658Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9810 2999..3658 +
1681145347.9384086-CDS-Ecto-sp8_S_contig9810:4492..48241681145347.9384086-CDS-Ecto-sp8_S_contig9810:4492..4824Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9810 4493..4824 +
1681145347.9573908-CDS-Ecto-sp8_S_contig9810:5268..54071681145347.9573908-CDS-Ecto-sp8_S_contig9810:5268..5407Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9810 5269..5407 +
1681145347.9743323-CDS-Ecto-sp8_S_contig9810:5998..61751681145347.9743323-CDS-Ecto-sp8_S_contig9810:5998..6175Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9810 5999..6175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9810.31598.1

>prot_Ecto-sp8_S_contig9810.31598.1 ID=prot_Ecto-sp8_S_contig9810.31598.1|Name=mRNA_Ecto-sp8_S_contig9810.31598.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=436bp
MAGSSSGCPVQHAPKESSSMPAAAAAATGNESTASATEPEQGSGRRWSSR
VAAWLPFRQGGGGSDASAAEGSGGAASPAAAAIQGSTARRGTKEKHGGGG
GGCPVNSSGEDGGDDAVPSSSSSSGCPVQHGSATTSTAAPAEGLGRVWGY
LTGSIGGAGGGGDGSSATAPAPEAPELYNARNNEYVYGQEVAAGQEVPLS
TSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADM
PSTLAIHNAVNEKGWDMVQEWERAHAEAAATATPAAGGGGAGGGGGAPAP
KLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDF
YAGKAPPGSSMPVAMHLDVRPALDSYDGGPPLPCRGAGRFQERPGAAAVG
SGCAAASLRGAVTRRGTVVLDAASAAAANRSLLGG*
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mRNA from alignment at Ecto-sp8_S_contig9810:2936..6627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9810.31598.1 ID=mRNA_Ecto-sp8_S_contig9810.31598.1|Name=mRNA_Ecto-sp8_S_contig9810.31598.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3692bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9810:2936..6627+ (Ectocarpus species8 EcLAC_412)
CCTGCGCACACCGCACACAGCAGGACGGCGAGCTACACAGTCGTCCTAAC TGCCGTCAGAAGCATGGCTGGCAGTAGTAGCGGGTGCCCGGTGCAGCACG CGCCGAAAGAATCCTCGTCGATGCCAGCAGCAGCAGCAGCGGCGACCGGA AATGAGTCGACTGCTTCTGCGACCGAGCCAGAGCAAGGCAGCGGAAGACG CTGGTCATCAAGGGTTGCCGCCTGGCTTCCCTTCCGCCAGGGCGGCGGCG GCAGTGACGCCAGCGCTGCCGAGGGTAGCGGTGGAGCTGCATCGCCAGCA GCAGCAGCCATTCAAGGCAGCACGGCTCGGCGGGGTACAAAGGAGAAACA CGGCGGCGGCGGTGGGGGGTGTCCGGTGAACAGCTCTGGGGAGGACGGAG GAGACGACGCCGTCCCGTCGTCGTCGTCTTCGTCCGGCTGTCCCGTCCAG CATGGATCGGCAACAACGTCAACAGCAGCCCCGGCAGAAGGGTTGGGCAG AGTGTGGGGGTACCTGACCGGGAGCATCGGTGGGGCGGGAGGTGGTGGCG ACGGTTCTTCGGCCACGGCACCAGCGCCAGAAGCACCCGAGTTGTACAAC GCGCGGAACAACGAGTACGTCTACGGGCAGGAGGTGGCCGCGGGGCAGGA GGTGCCCCTGTCCACGTCGCGGCAACGCTCTTCTATCCCGAAGGCAGAGT TCAACCCGGACCATCAGCCCCAGGTGCGTTGGTGCGAGGAAAACGGGGGA GGTTGTATCTATCCCACCCGGGATACAATTAGCAGAGTACCCCGCAGGGG GCAGCATAGAGTCAGCTACAGTACTTGTAGATCGACCACATGTTCTGCAT GTCTGCTGTGCGCCAAGTGTGCAACTTCACAAAGGCCAAGCGGTCGGTTC TACACGAGTTCCTTGCGTTTCCAGCTCTTGGCACGACCACTTCTGTGGCC TTGAAATGCGCTGGAGGACGGCCTTTCCAGCATCGCTGGCGCGAGCCTGG GCGGGGTCGATGCCAATGCCGTTCAGGTCACGGCACAGCGCTCGCTACCG AAGTCTTGGGATCCCTTGCCCGATTTTCCTCCCCCATGCAACAGCATATT GTAACGCGTTGATCTTCGAAGGAATATGTACAGCTTGGAGCACTGCACAG CAGGATTGACAGTATCAGGAATCGTGGCACAAAGTGTGGAAAAGAGAAGT TTGAGAATCTTCCCTGGTGCGCGTCGTGTCTGCGTGACGCATGTATGCGT CAGGGGCTGGAATCGGCTTGCCGGAATGCGCTGGCGTAGCATTTTAACCT GCTACTTGCGTGCTTCTGTTTCCCTTGCTCTTTTTCTGTCAATCTACTTA TTTGTATGGGTTTGTTGGAGCGTTGGACGCGTTTTCCGTGCGTGGGGGCT TCCAACCCTCAATGGAATCCTAATCCTGTTACCTGGTGTTGGAAACTCTC TGTCGTGCCGAACCCGCTCTTGCTTTTCGCAGTTGCTTCGAGGTCCCCGT TCCAAGTTTACTGAGCTCCCCCCCCCCCCTGCCTAAAAAACCTCCACCAC CGTACAGAAGGAGGCCGAGAAGTGGGTCTACCCGTCGGAGCAGCAGTACT ACAACGCCATCAAGAGGAAGGGGTACAAGGCCTCAGCGGCAGACATGCCG TCCACCCTGGCCATCCACAACGCCGTGAACGAAAAGGGTTGGGACATGGT TCAGGAGTGGGAGAGGGCTCACGCCGAGGCCGCCGCAACTGCGACGCCCG CCGCCGGGGGAGGGGGGGCGGGGGGGGGCGGCGGCGCCCCCGCCCCCAAG CTGCTCCGCTTCACGGGGAGGCCGCAGGATACATCGCCCAAGGCTTGGGT CAAGTCGACCCTTCTCGGCTACCGTCCCCCTTTCGACAGGTATAGACCAC ATGCTGTGTGTTGGGATCGTGCTGTCGACGGTGTGGGTGTCAGTTCACCT CGTTGTGATAGACTTTTGTTTATGGTGGGGGGTGGGGGGGGGGCGTTGGG AGTTGGGAGTGGGCAATATCGCGATAATGTATTGAGAAGGCGACGGCAGA TATGTAGTGGATGATTATGATTGCAGACGAGGATTCCTAAGCACGAATAC CATCGCACGGGCACCGGAGCTGGACAGCTTGGCCGTTCGATAGCCGTCAA CGCCAGCACCAAGTACGTGCGCAGAGCCACCTGCTGAAGTGTGCGCACAA ATGGCAGGGAGCATGCACGTGACAGCATTGAACACGACACGCTTTATTGT CTTGCCACGACGCGCTTGTTTGTTTCGCCCCTTCCCACCCCACCCAAACA TCTCGTTTCTCGTGCGCTTCTCCTCCCCGGCAGACACGATTGGGTAGTGA AGAGGGCAGACGGCACCGAGGCACGGTACGTGATCGACTTCTACGCGGGG AAGGCTCCCCCCGGCTCCAGCATGCCGGTAGCGATGCACTTGGACGTGCG ACCCGCTCTCGATTCCTACGATGTAAGTCAGGCATTTTACACACCAGCTT TGTTCCAGGTCGTTGGTTCTTGTTGTTGTCTACTTTGTCGTTAGTTGTGT CTGCCTTCGAAGGCGTGCCGTCACGGCACGTGCATGTCGGTAACCGCAAA CGTTGTTGTCGTACGTCCCAGTATGGCGGCGACGATGCGCCCAGACGTGG AGGCCGTTTGTTCCCTAGGATATCATCATCCACCCAGGGGGAAAAAACTC CCTCGTCAAAACGTGTTTCGAGACCTCCACCAAGCGAGAGAGTTAACTCT AGCATCGATCGCAAGGTCAGCTCGATGCACGCATATGCCTTTATGAGTGA TCACGAGAACTGCACGAGCTCTCATGTGTATCCCCCCGAGGGTGTTTCCG CTCGCAAGACAGACGACTCTCCCCCGCTATTATTTTTTCTCTGTTTGGCA AGAGACCGTCACTGTTGCTTCCCTACCCTTTTTTATTTTTTATTTAGTAA GCATAGACCAATGACCGCTGCTTCCCTCCCCAAAACGTGGATGGTGCCGT TTGTCGTCCGAACTGGGACACACTGAAGGCGGTCGTGGACCGGACGCGGA TGTTCTACAGCAGGGAGGTCCGCCCCTACCTTGCCGGGGTGCTGGACGCT TTCAAGAACGACCCGGGGCCGCCGCCGTCGGATCAGGATGCGCCGCCGCC TCCCTCCGTGGCGCGGTGACACGGCGTGGGACTGTTGTGCTTGATGCTGC TTCTGCTGCTGCTGCCAACAGATCTCTGCTCGGTGGTTAGTGCTCCAGCA TTGTTGTTTGCCTGAGGGCGCTGTCGGTGTTGTTGCTGCTGCTGCTGCCG CTGTCAACAGCTCAGGGGTACTCCAGCTCTTTTTTGTCTGAGGGCGTTGT TGCTGTTGTTGCTGCTGCTGCCAACAGACAGCTCGGTGGATGGGGAGGGG GCTGTGTACGTGCGCATGTCCTTTTTTTGTGGGCGAGCATTGCCCCGGGT AGCTGCTACTTGTGTCACTCAATCCCTGGGTGTATGACGGGGCAAAACCA GCCCATTAAGTTGACGGTTGGACCTGTGCGTCTTTCTCTTTCTGCCCCCA CGCGCATGTTGTGTTGTAGCAGCTACCACGCCCGCGAGCCAATCTCACGA CCACCACCATGCGGAAGGGGGCGCAACAATTGAAATGAGGCGATTTTCCC CTCGTCCCAGTTCTTCGTTTTATAGCGTCTATCCATGGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9810:2936..6627+

>mRNA_Ecto-sp8_S_contig9810.31598.1 ID=mRNA_Ecto-sp8_S_contig9810.31598.1|Name=mRNA_Ecto-sp8_S_contig9810.31598.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9810:2936..6627+ (Ectocarpus species8 EcLAC_412)
ATGGCTGGCAGTAGTAGCGGGTGCCCGGTGCAGCACGCGCCGAAAGAATC
CTCGTCGATGCCAGCAGCAGCAGCAGCGGCGACCGGAAATGAGTCGACTG
CTTCTGCGACCGAGCCAGAGCAAGGCAGCGGAAGACGCTGGTCATCAAGG
GTTGCCGCCTGGCTTCCCTTCCGCCAGGGCGGCGGCGGCAGTGACGCCAG
CGCTGCCGAGGGTAGCGGTGGAGCTGCATCGCCAGCAGCAGCAGCCATTC
AAGGCAGCACGGCTCGGCGGGGTACAAAGGAGAAACACGGCGGCGGCGGT
GGGGGGTGTCCGGTGAACAGCTCTGGGGAGGACGGAGGAGACGACGCCGT
CCCGTCGTCGTCGTCTTCGTCCGGCTGTCCCGTCCAGCATGGATCGGCAA
CAACGTCAACAGCAGCCCCGGCAGAAGGGTTGGGCAGAGTGTGGGGGTAC
CTGACCGGGAGCATCGGTGGGGCGGGAGGTGGTGGCGACGGTTCTTCGGC
CACGGCACCAGCGCCAGAAGCACCCGAGTTGTACAACGCGCGGAACAACG
AGTACGTCTACGGGCAGGAGGTGGCCGCGGGGCAGGAGGTGCCCCTGTCC
ACGTCGCGGCAACGCTCTTCTATCCCGAAGGCAGAGTTCAACCCGGACCA
TCAGCCCCAGAAGGAGGCCGAGAAGTGGGTCTACCCGTCGGAGCAGCAGT
ACTACAACGCCATCAAGAGGAAGGGGTACAAGGCCTCAGCGGCAGACATG
CCGTCCACCCTGGCCATCCACAACGCCGTGAACGAAAAGGGTTGGGACAT
GGTTCAGGAGTGGGAGAGGGCTCACGCCGAGGCCGCCGCAACTGCGACGC
CCGCCGCCGGGGGAGGGGGGGCGGGGGGGGGCGGCGGCGCCCCCGCCCCC
AAGCTGCTCCGCTTCACGGGGAGGCCGCAGGATACATCGCCCAAGGCTTG
GGTCAAGTCGACCCTTCTCGGCTACCGTCCCCCTTTCGACAGACACGATT
GGGTAGTGAAGAGGGCAGACGGCACCGAGGCACGGTACGTGATCGACTTC
TACGCGGGGAAGGCTCCCCCCGGCTCCAGCATGCCGGTAGCGATGCACTT
GGACGTGCGACCCGCTCTCGATTCCTACGATGGAGGTCCGCCCCTACCTT
GCCGGGGTGCTGGACGCTTTCAAGAACGACCCGGGGCCGCCGCCGTCGGA
TCAGGATGCGCCGCCGCCTCCCTCCGTGGCGCGGTGACACGGCGTGGGAC
TGTTGTGCTTGATGCTGCTTCTGCTGCTGCTGCCAACAGATCTCTGCTCG
GTGGTTAG
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