mRNA_Ecto-sp8_S_contig981.31597.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig981.31597.1
Unique NamemRNA_Ecto-sp8_S_contig981.31597.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig981.31597.1 vs. uniprot
Match: D7FHB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB4_ECTSI)

HSP 1 Score: 561 bits (1447), Expect = 4.010e-200
Identity = 275/282 (97.52%), Postives = 278/282 (98.58%), Query Frame = 1 
Query:    1 TAIKQRQDSLKTYGGEEGQQDHGEKMMPNHPESRVQTIWEMMTWITAHSPKPMENIWYESKELMMTLHEISGQNARGAVWPSFPGIESWFRISKDIARQRDSPLLLSVFEFKRFALRIASSSALLAYNPREYDNLVTSVYNLGILARWTHGWSGRLSCYSALWTPGNVGMALLGGLTLLVIRKNVVTDSVRCLLVGMASDTIMGRYLPDKVRAARTEELAYRYSNNKGKTCRGSGVKCVRKACVKLGLPPSASQLDGAVAFAVGWAMEAIDGLPGNQDPRDG 846
            TAIKQRQDSLK YGGEEGQQD GEKMMPNHPESRVQTIWEMMTWITAHSPKPMENIWYESKELMMTLHEISGQNARGAVWPSFPGIESWFRI+KDIARQRDSPLLLSVFEFKRFALRIASSSALLAYNP EYDNLVTSVYNLGILARWTHGWSGRLSCYSALWTPGNVGMALLGGLTLLVIRKNVVTDSVRCLLVGMASDTIMGRYLPDKVRAART+ELAYRYSNNKGKTCRGSGVKCVRKACVKLGLPPSASQLDGAVAFAVGWAMEAI+GLPGNQ PRDG
Sbjct:  104 TAIKQRQDSLKIYGGEEGQQDRGEKMMPNHPESRVQTIWEMMTWITAHSPKPMENIWYESKELMMTLHEISGQNARGAVWPSFPGIESWFRIAKDIARQRDSPLLLSVFEFKRFALRIASSSALLAYNPGEYDNLVTSVYNLGILARWTHGWSGRLSCYSALWTPGNVGMALLGGLTLLVIRKNVVTDSVRCLLVGMASDTIMGRYLPDKVRAARTKELAYRYSNNKGKTCRGSGVKCVRKACVKLGLPPSASQLDGAVAFAVGWAMEAIEGLPGNQAPRDG 385
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BLAST of mRNA_Ecto-sp8_S_contig981.31597.1 vs. uniprot
Match: R7QMQ2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMQ2_CHOCR)

HSP 1 Score: 180 bits (457), Expect = 4.280e-50
Identity = 109/312 (34.94%), Postives = 159/312 (50.96%), Query Frame = 1 
Query:    1 TAIKQRQDSLKTYGGEEGQQD-HGEKMMPNHPESRVQTIWEMMTWITAHSPKPMENIWYESKELMMTLHEISGQNARGAVWPS--FPGIESWFRISKDIARQRDSPLLLSVFEFKRFALRIASSSALLAYNPREYDNLVTSVYNLGILARWTHGWSGRLSCYSALWTPGNVGMALLGGLTLLVIRKNV----VTDSVRCLLVGMASDTIMGRYLPDKVRAARTEELAYRYSNNKGKTCRGSGVKCVRKACVKLGLPPSASQLDGAVAFAVGWAMEAIDGLPGNQDPRDGNNHDQIEDIFCSSRAYRFTDERL 915
            T  +Q  + L TYG  EGQQD HGE        +    I  ++   T   P  M ++WY +        E + +  + + +    FP   SW  I++D+      P+ LS      FA  +AS+S ++   P +Y  LV  +Y  G+ ARWT GWSG L+C++ LWT   + +A+L GL+LL +        +  +VR +L G A+  +  R +  ++   R  EL  RY+   GKTCRGSGV   R AC  L +P  AS +DG  AFA GWA E ++  PGNQ P  G +HD +E    SS A+R+    +
Sbjct:  109 TTREQWANCLLTYGTAEGQQDTHGECPSSVVNFNTAAGIAVVVREKTRFPPNRMSSLWYTTARFEELYEEKAQEVRKMSEFRDVLFPSWTSWLNIAQDVGTHLSRPVYLSDSYLINFAGELASASLIVVRYPEKYRKLVDQIYEDGLDARWTFGWSGLLACFTQLWTKERIHIAMLNGLSLLALNSGQEVEHIDPNVRSMLYGYAAFAVSTRAVGKRIAEDRKVELLRRYTTESGKTCRGSGVCATRLACSILKIPAEASHMDGLPAFATGWASEYMEFKPGNQKPEHGESHDDVEMKHGSSNAWRYPHSHI 420
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BLAST of mRNA_Ecto-sp8_S_contig981.31597.1 vs. uniprot
Match: R7QFI2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFI2_CHOCR)

HSP 1 Score: 159 bits (402), Expect = 5.460e-41
Identity = 88/272 (32.35%), Postives = 151/272 (55.51%), Query Frame = 1 
Query:   97 SRVQTIWEMMTWITAHSPKPMENIWYESKELMMTLHEISGQNARGAVWPSFPGIESWFRISKDIARQRDSPLLLSVFEFKRFALRIASSSALLAYNPREYDNLVTSVYNLGILARWTHGWSGRLSCYSALWTPGNVGMALLGGLTLLVIRKNV----VTDSVRCLLVGMASDTIMGRYLPDKVRAARTEELAYRYSNNKGKTCRGSGVKCVRKACVKLGLPPSASQLDGAVAFAVGWAMEAIDGLPGNQDPRDGNNHDQIEDIFCSSRAYRF 900
            +R+  +W        H+    E ++ ++++ ++   EI        V P++    SW +I++DI+     P+ L+      FA  ++++S +L   P +Y  LV  ++  G+ ARWT+GWSG LSC+SALWT   +  A+L GL+LL I  N     +  ++R +L G AS  +  R + +K++  + +E++ R+  N G T RG G+  VR+AC +LG+P     +DG +A +V WAM+ +DG  G      GN H++I+ +  SS A+R+
Sbjct:  308 NRISILW--------HNTARFEKVYEDNRKALIEEEEIPN-----VVLPTW---SSWVQIAQDISTNLCRPVYLNGSLLTNFAAELSAASVILLRYPEKYKRLVEQIHMDGLNARWTYGWSGLLSCFSALWTMERIYFAMLNGLSLLAISGNGEVANIDKNIRAMLYGYASFAVSDRAIGEKIKDLQQKEMSRRHVANLGVTFRGYGLDTVRRACKRLGIPRDVRFMDGPLALSVAWAMQYLDGECGLDTLTQGNTHEEIDRLLGSSTAWRY 563
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig981.31597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHB4_ECTSI4.010e-20097.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
R7QMQ2_CHOCR4.280e-5034.94Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QFI2_CHOCR5.460e-4132.35Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig981contigEcto-sp8_S_contig981:15980..16897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size918
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_004090.2
Cds size918
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145347.8688884-CDS-Ecto-sp8_S_contig981:15979..168971681145347.8688884-CDS-Ecto-sp8_S_contig981:15979..16897Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig981 15980..16897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig981.31597.1prot_Ecto-sp8_S_contig981.31597.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig981 15980..16897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig981.31597.1

>prot_Ecto-sp8_S_contig981.31597.1 ID=prot_Ecto-sp8_S_contig981.31597.1|Name=mRNA_Ecto-sp8_S_contig981.31597.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=306bp
TAIKQRQDSLKTYGGEEGQQDHGEKMMPNHPESRVQTIWEMMTWITAHSP
KPMENIWYESKELMMTLHEISGQNARGAVWPSFPGIESWFRISKDIARQR
DSPLLLSVFEFKRFALRIASSSALLAYNPREYDNLVTSVYNLGILARWTH
GWSGRLSCYSALWTPGNVGMALLGGLTLLVIRKNVVTDSVRCLLVGMASD
TIMGRYLPDKVRAARTEELAYRYSNNKGKTCRGSGVKCVRKACVKLGLPP
SASQLDGAVAFAVGWAMEAIDGLPGNQDPRDGNNHDQIEDIFCSSRAYRF
TDERL*
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mRNA from alignment at Ecto-sp8_S_contig981:15980..16897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig981.31597.1 ID=mRNA_Ecto-sp8_S_contig981.31597.1|Name=mRNA_Ecto-sp8_S_contig981.31597.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=918bp|location=Sequence derived from alignment at Ecto-sp8_S_contig981:15980..16897+ (Ectocarpus species8 EcLAC_412)
ACCGCGATCAAGCAGCGCCAGGATTCTCTCAAGACATACGGTGGGGAAGA
GGGCCAGCAGGACCACGGGGAAAAGATGATGCCGAACCACCCGGAGTCTA
GAGTGCAGACCATCTGGGAGATGATGACATGGATCACGGCCCATTCGCCC
AAGCCCATGGAAAACATATGGTACGAGTCGAAGGAGCTGATGATGACGCT
GCACGAAATCTCGGGGCAGAACGCCAGGGGGGCCGTGTGGCCTTCCTTCC
CTGGCATCGAGAGTTGGTTTCGTATCTCGAAAGACATCGCTCGTCAGCGG
GACTCGCCCCTTCTACTAAGCGTGTTCGAGTTCAAGCGGTTCGCGCTGCG
AATTGCGTCATCGTCGGCCCTATTAGCGTACAACCCTCGCGAGTACGACA
ATTTAGTCACGTCGGTGTACAATCTGGGGATCTTGGCGCGGTGGACACAC
GGGTGGTCCGGGCGCCTGTCGTGCTACTCTGCCTTGTGGACGCCGGGCAA
CGTGGGCATGGCGCTCCTGGGCGGGCTGACGCTGCTCGTGATCCGCAAGA
ACGTCGTCACTGACTCTGTACGCTGCCTCCTTGTAGGCATGGCGTCGGAT
ACCATCATGGGGCGGTATTTGCCGGACAAGGTCCGCGCTGCCAGGACCGA
AGAGCTCGCCTATAGGTACTCCAACAACAAGGGCAAGACGTGCCGCGGCA
GCGGCGTCAAGTGCGTGCGCAAGGCATGCGTGAAGCTCGGGCTCCCGCCT
TCGGCCAGCCAGCTCGACGGCGCGGTGGCATTCGCCGTGGGGTGGGCAAT
GGAGGCCATCGACGGCCTGCCGGGGAACCAGGACCCAAGGGACGGTAACA
ATCACGATCAGATCGAGGACATCTTCTGCTCCAGCCGCGCGTACCGTTTC
ACGGACGAACGGCTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig981:15980..16897+

>mRNA_Ecto-sp8_S_contig981.31597.1 ID=mRNA_Ecto-sp8_S_contig981.31597.1|Name=mRNA_Ecto-sp8_S_contig981.31597.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp8_S_contig981:15980..16897+ (Ectocarpus species8 EcLAC_412)
ACCGCGATCAAGCAGCGCCAGGATTCTCTCAAGACATACGGTGGGGAAGA
GGGCCAGCAGGACCACGGGGAAAAGATGATGCCGAACCACCCGGAGTCTA
GAGTGCAGACCATCTGGGAGATGATGACATGGATCACGGCCCATTCGCCC
AAGCCCATGGAAAACATATGGTACGAGTCGAAGGAGCTGATGATGACGCT
GCACGAAATCTCGGGGCAGAACGCCAGGGGGGCCGTGTGGCCTTCCTTCC
CTGGCATCGAGAGTTGGTTTCGTATCTCGAAAGACATCGCTCGTCAGCGG
GACTCGCCCCTTCTACTAAGCGTGTTCGAGTTCAAGCGGTTCGCGCTGCG
AATTGCGTCATCGTCGGCCCTATTAGCGTACAACCCTCGCGAGTACGACA
ATTTAGTCACGTCGGTGTACAATCTGGGGATCTTGGCGCGGTGGACACAC
GGGTGGTCCGGGCGCCTGTCGTGCTACTCTGCCTTGTGGACGCCGGGCAA
CGTGGGCATGGCGCTCCTGGGCGGGCTGACGCTGCTCGTGATCCGCAAGA
ACGTCGTCACTGACTCTGTACGCTGCCTCCTTGTAGGCATGGCGTCGGAT
ACCATCATGGGGCGGTATTTGCCGGACAAGGTCCGCGCTGCCAGGACCGA
AGAGCTCGCCTATAGGTACTCCAACAACAAGGGCAAGACGTGCCGCGGCA
GCGGCGTCAAGTGCGTGCGCAAGGCATGCGTGAAGCTCGGGCTCCCGCCT
TCGGCCAGCCAGCTCGACGGCGCGGTGGCATTCGCCGTGGGGTGGGCAAT
GGAGGCCATCGACGGCCTGCCGGGGAACCAGGACCCAAGGGACGGTAACA
ATCACGATCAGATCGAGGACATCTTCTGCTCCAGCCGCGCGTACCGTTTC
ACGGACGAACGGCTGTAG
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