mRNA_Ecto-sp8_S_contig98097.31596.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98097.31596.1
Unique NamemRNA_Ecto-sp8_S_contig98097.31596.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Match: D8LPQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ3_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.350e-41
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1
Query:    1 VPVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYASDVLEFVAELGFTGRDKEPQRV 219
            VPVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYA DVLEFVAELGFTGRDKEPQRV
Sbjct:  104 VPVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYARDVLEFVAELGFTGRDKEPQRV 176          
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Match: UPI000F555A3B (temperature-induced lipocalin-1-like n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F555A3B)

HSP 1 Score: 68.9 bits (167), Expect = 1.250e-12
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    1 VPVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYASDVLEFVAELGFT 192
            VP+ G YWVV LGP TFG   LYQ+++V+G     LFVL RDV  F+  Y  +V  F+ E GFT
Sbjct:  105 VPILGSYWVVKLGPPTFGEKGLYQYSVVTGSKQIMLFVLTRDVETFKSQYDEEVRSFLKENGFT 168          
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Match: A0A6C0LJJ7_9ZZZZ (Lipocln_cytosolic_FA-bd_dom domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LJJ7_9ZZZZ)

HSP 1 Score: 67.0 bits (162), Expect = 5.970e-12
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    4 PVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYASDVLEFVAELGFTGRDKEP 210
            PVD DYWVV LGP     D+ Y +A+V+     +L+VL RDV+EF   Y ++VL+ + ELGF G+ KEP
Sbjct:  116 PVDADYWVVDLGP--INSDNKYDYAIVTDNIGLTLYVLGRDVKEFNMKYNTNVLDKLDELGFNGKVKEP 182          
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Match: UPI000A2A5FF2 (temperature-induced lipocalin-1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5FF2)

HSP 1 Score: 67.0 bits (162), Expect = 7.100e-12
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    4 PVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYASDVLEFVAELGF 189
            PVDGDYWV+ LGP +FG D  YQ+++V+     +LFVL RD + F+  Y  +V+ F+ E GF
Sbjct:  109 PVDGDYWVIKLGPQSFGEDKKYQYSVVTDRLGLTLFVLARDPQAFKNDYDKEVITFLNEKGF 170          
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Match: A0A2B4SGV8_STYPI (Outer membrane lipoprotein Blc n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SGV8_STYPI)

HSP 1 Score: 67.4 bits (163), Expect = 9.600e-12
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 VPVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYASDVLEFVAELGFTGRDKEP 210
            VP  G YWVV LGP TFG + LYQ+++V+      LFVL RDV  F   Y  +V  F+AE GFT    +P
Sbjct:  158 VPFLGSYWVVKLGPPTFGVEGLYQYSVVTDSTQIMLFVLTRDVETFRNQYDEEVKSFLAENGFTHLYNKP 227          
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Match: A0A6P8IR58_ACTTE (temperature-induced lipocalin-1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IR58_ACTTE)

HSP 1 Score: 66.2 bits (160), Expect = 1.400e-11
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    4 PVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYASDVLEFVAELGFT 192
            PVDG YW+V LGP TFG D  YQ+++V+     S+FVL RD   F K Y  +V  F+   GFT
Sbjct:  109 PVDGSYWIVKLGPQTFGSDKQYQYSIVTDSLQLSMFVLARDPEAFTKEYDEEVKTFLKNNGFT 171          
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Match: A0A8B6D1M1_MYTGA (Lipocln_cytosolic_FA-bd_dom domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6D1M1_MYTGA)

HSP 1 Score: 65.5 bits (158), Expect = 2.470e-11
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    4 PVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYASDVLEFVAELGFTGRDKEP 210
            P+   YWV+ LGP TFG D  YQ+++VS     +LFVL RD   F KTY S++L+F+ E GFT    +P
Sbjct:  116 PLPAPYWVLKLGPKTFGTDGQYQYSIVSDFLKATLFVLARDTTTF-KTYESEILQFLKEQGFTSIINKP 183          
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Match: A0A7I8VUA1_9ANNE (DgyrCDS8130 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VUA1_9ANNE)

HSP 1 Score: 66.6 bits (161), Expect = 3.480e-11
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 VPVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYASDVLEFVAELGFTGRDKEPQRV 219
            VP    YWV+ LGP TFG D  Y++ALVS P   +LFVL R+V +F + +  +V +F+ E GF   D   +RV
Sbjct:  284 VPRIAPYWVIKLGPKTFGFDGYYEYALVSEPTKLNLFVLARNVDDFNQRFDQEVRDFLDEEGFNSEDNPYRRV 356          
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Match: A0A8B6DKZ2_MYTGA (Apolipoprotein D and lipocalin family protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DKZ2_MYTGA)

HSP 1 Score: 65.1 bits (157), Expect = 3.520e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 VPVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYASDVLEFVAELGFTGRDKEP 210
            V  +  YWV+ LGP TFGPD+ YQ+ALVS     +LFVL RD   F++ Y ++V++F+   GFT    +P
Sbjct:  115 VGFNAPYWVMKLGPATFGPDNKYQYALVSDNLKATLFVLARDPVVFKRDYEAEVMQFLKSEGFTSIINKP 184          
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Match: A0A2B4SAH5_STYPI (Apolipoprotein D n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SAH5_STYPI)

HSP 1 Score: 65.1 bits (157), Expect = 3.680e-11
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 VPVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTYASDVLEFVAELGFT 192
            V V G YWVV LGP TFG + LYQ+++V+      LFVL RDV  F   Y  +V  F+AE GFT
Sbjct:  105 VHVLGSYWVVKLGPPTFGEEGLYQYSVVTDSMQIMLFVLTRDVETFRNQYDEEVKSFLAENGFT 168          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98097.31596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPQ3_ECTSI1.350e-4198.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000F555A3B1.250e-1251.56temperature-induced lipocalin-1-like n=2 Tax=Pocil... [more]
A0A6C0LJJ7_9ZZZZ5.970e-1249.28Lipocln_cytosolic_FA-bd_dom domain-containing prot... [more]
UPI000A2A5FF27.100e-1248.39temperature-induced lipocalin-1 n=1 Tax=Exaiptasia... [more]
A0A2B4SGV8_STYPI9.600e-1248.57Outer membrane lipoprotein Blc n=2 Tax=Stylophora ... [more]
A0A6P8IR58_ACTTE1.400e-1149.21temperature-induced lipocalin-1-like n=1 Tax=Actin... [more]
A0A8B6D1M1_MYTGA2.470e-1147.83Lipocln_cytosolic_FA-bd_dom domain-containing prot... [more]
A0A7I8VUA1_9ANNE3.480e-1145.21DgyrCDS8130 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
A0A8B6DKZ2_MYTGA3.520e-1145.71Apolipoprotein D and lipocalin family protein n=1 ... [more]
A0A2B4SAH5_STYPI3.680e-1151.56Apolipoprotein D n=1 Tax=Stylophora pistillata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98097contigEcto-sp8_S_contig98097:10..491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score153.3
Seed ortholog evalue4.4e-35
Seed eggNOG ortholog2880.D8LPQ3
Model size219
KEGG koko:K03098
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.negative regulation of lipoprotein oxidation
EggNOG OGsCOG3040@1,KOG4824@2759
Cds size219
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145347.8169615-CDS-Ecto-sp8_S_contig98097:9..1011681145347.8169615-CDS-Ecto-sp8_S_contig98097:9..101Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98097 10..101 +
1681145347.8326795-CDS-Ecto-sp8_S_contig98097:364..4911681145347.8326795-CDS-Ecto-sp8_S_contig98097:364..491Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98097 365..491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98097.31596.1prot_Ecto-sp8_S_contig98097.31596.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98097 10..491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98097.31596.1

>prot_Ecto-sp8_S_contig98097.31596.1 ID=prot_Ecto-sp8_S_contig98097.31596.1|Name=mRNA_Ecto-sp8_S_contig98097.31596.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=73bp
VPVDGDYWVVGLGPDTFGPDSLYQWALVSGPDAESLFVLVRDVREFEKTY
ASDVLEFVAELGFTGRDKEPQRV
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mRNA from alignment at Ecto-sp8_S_contig98097:10..491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98097.31596.1 ID=mRNA_Ecto-sp8_S_contig98097.31596.1|Name=mRNA_Ecto-sp8_S_contig98097.31596.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=482bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98097:10..491+ (Ectocarpus species8 EcLAC_412)
GTGCCCGTCGACGGTGATTACTGGGTGGTCGGCCTCGGCCCTGACACGTT TGGCCCCGACTCGTTGTATCAGTGGGCTCTCGTCAGTGGACCGTGAGTGG ATGAACCGTTCTCGGGTGCCGTGATGTTCCGGATCTTGTCATGCGCTTCC CAACCAAGCCTTGTCACCGTTTTATTCTTTGTTCGAGATCATACACAGCA GCCAGGGAAGCATAGGAATTTCAGAACGCCTGGCTGGTATTTTAACTCGT ATTGCATGTATTGCATGCACTCCATCATTCAATGCCCCCAACCGATTTTG AGTGATTCCGGCGTCCTTTTCCTGTTCGATACACGTGCCGTATTAATGAG TGCAGGGACGCTGAATCTCTGTTTGTCCTCGTGCGCGACGTCCGGGAGTT CGAGAAGACATACGCTAGCGATGTACTCGAATTCGTCGCGGAGTTGGGCT TCACGGGAAGGGATAAGGAACCTCAACGCGTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98097:10..491+

>mRNA_Ecto-sp8_S_contig98097.31596.1 ID=mRNA_Ecto-sp8_S_contig98097.31596.1|Name=mRNA_Ecto-sp8_S_contig98097.31596.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98097:10..491+ (Ectocarpus species8 EcLAC_412)
GTGCCCGTCGACGGTGATTACTGGGTGGTCGGCCTCGGCCCTGACACGTT
TGGCCCCGACTCGTTGTATCAGTGGGCTCTCGTCAGTGGACCGGACGCTG
AATCTCTGTTTGTCCTCGTGCGCGACGTCCGGGAGTTCGAGAAGACATAC
GCTAGCGATGTACTCGAATTCGTCGCGGAGTTGGGCTTCACGGGAAGGGA
TAAGGAACCTCAACGCGTT
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