mRNA_Ecto-sp8_S_contig9809.31595.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9809.31595.1
Unique NamemRNA_Ecto-sp8_S_contig9809.31595.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9809.31595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9809contigEcto-sp8_S_contig9809:5120..6036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size389
Hectar predicted targeting categoryother localisation
Exons3
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145347.6933062-CDS-Ecto-sp8_S_contig9809:5119..53071681145347.6933062-CDS-Ecto-sp8_S_contig9809:5119..5307Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9809 5120..5307 +
1681145347.7087004-CDS-Ecto-sp8_S_contig9809:5540..56191681145347.7087004-CDS-Ecto-sp8_S_contig9809:5540..5619Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9809 5541..5619 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145347.7212505-UTR-Ecto-sp8_S_contig9809:5619..56521681145347.7212505-UTR-Ecto-sp8_S_contig9809:5619..5652Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9809 5620..5652 +
1681145347.7352726-UTR-Ecto-sp8_S_contig9809:5949..60361681145347.7352726-UTR-Ecto-sp8_S_contig9809:5949..6036Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9809 5950..6036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9809.31595.1prot_Ecto-sp8_S_contig9809.31595.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9809 5120..5619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9809.31595.1

>prot_Ecto-sp8_S_contig9809.31595.1 ID=prot_Ecto-sp8_S_contig9809.31595.1|Name=mRNA_Ecto-sp8_S_contig9809.31595.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=89bp
LWSDPCSSPEPRPLPRPCSLSVVSWSCILQIEVQLLTLRSLADCAYSVSR
CSVERAVQNTGEGSGARRSLRDPMLAKLVRTFKPSRVS*
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mRNA from alignment at Ecto-sp8_S_contig9809:5120..6036+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9809.31595.1 ID=mRNA_Ecto-sp8_S_contig9809.31595.1|Name=mRNA_Ecto-sp8_S_contig9809.31595.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=917bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9809:5120..6036+ (Ectocarpus species8 EcLAC_412)
CTTTGGTCCGATCCCTGTTCAAGCCCAGAGCCTCGCCCTTTGCCGCGCCC
CTGCAGCCTCTCGGTCGTTAGCTGGAGCTGCATCTTGCAAATTGAAGTTC
AGCTCTTGACACTGCGTTCTCTCGCAGATTGTGCATATTCTGTCTCACGG
TGTTCTGTAGAACGTGCAGTGCAGAACACGGGAGAAGGGTGAGAGACGCT
AGGCTACGTTGTCCATGTGTCATGTCAACACCATGACATGAGTTCACGCC
AATTTGTGCTGCACGTTTTTCTGTCGATGGCGAGCGAAGGAGCTCGTACT
TCGAACCTTGGCATTCTTTGAAGGTCCGCGACGCCCGTCACTTTTGCGTG
GATCTGCCCGACACGCCCATCATGAGCAACATTCGCATGCTTCGACCGCC
GTGACATGCCCAAAATTGCAGCTCTGGAGCACGCCGATCGCTCCGCGACC
CCATGCTAGCAAAGTTGGTTCGGACATTCAAGCCGTCACGGGTTTCCTAG
ATACACTTCCTCCTGTCGTCGAGTTGCCCCACGGTAAGATACAAGCGGCG
GTTCCTTGGTCCCCGCCGTGCCTGCACCCCCCCCCCAACCGCCGCCCCCT
TTCCGCCCTTCCATTGACTTCACAAGCGCCCCGTACACCAAGCCCGAACA
CCTCAGAGTGCTCACGTGCGGAAGAGGTAAAGTGCATTCGCCTCTCAAAC
GGACGGGTGCCGTTTCTGCAGGCGCCCCGCTCCCTCCAGTCAGTCACACC
GCTCTCCCTTTCAAACAAATGTTCCTCCGCACCCCCGCCTCCCCCCCCCC
CCTCCTCCCGCCTGCCCCTCAACCCAGCAGAGAAGAGCCCCCCTCAGAGA
AACATGCCGCCTCGATGGAGGCGCACTGCGGACGTCTCGCTGTTCGAGGC
GATCCGCTCCTACACGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9809:5120..6036+

>mRNA_Ecto-sp8_S_contig9809.31595.1 ID=mRNA_Ecto-sp8_S_contig9809.31595.1|Name=mRNA_Ecto-sp8_S_contig9809.31595.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9809:5120..6036+ (Ectocarpus species8 EcLAC_412)
CTTTGGTCCGATCCCTGTTCAAGCCCAGAGCCTCGCCCTTTGCCGCGCCC
CTGCAGCCTCTCGGTCGTTAGCTGGAGCTGCATCTTGCAAATTGAAGTTC
AGCTCTTGACACTGCGTTCTCTCGCAGATTGTGCATATTCTGTCTCACGG
TGTTCTGTAGAACGTGCAGTGCAGAACACGGGAGAAGGCTCTGGAGCACG
CCGATCGCTCCGCGACCCCATGCTAGCAAAGTTGGTTCGGACATTCAAGC
CGTCACGGGTTTCCTAG
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