mRNA_Ecto-sp8_S_contig9803.31587.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9803.31587.1
Unique NamemRNA_Ecto-sp8_S_contig9803.31587.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9803.31587.1 vs. uniprot
Match: A0A6H5LD80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD80_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 8.320e-68
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:    1 MFSQADIEDRAKRDVHRARARRQEVALKELHQKEAEQRKKTAACGRWVRVEADRSRLLRGTKASKERMLEPEDLDDLEDQRAGLPAHCSPIAISGRDLRFNQGRAVPAWRRGCL 342
            MFSQ DIEDRA+RDV RARARRQEVALKELHQKEAEQRKK AACGRWV VEADRSRLLRGTKASKERMLEPEDLDDLED+RA LPAHCSPIAISGRDLRFNQGRAVPAWRRGCL
Sbjct:   75 MFSQVDIEDRARRDVDRARARRQEVALKELHQKEAEQRKKAAACGRWVGVEADRSRLLRGTKASKERMLEPEDLDDLEDRRASLPAHCSPIAISGRDLRFNQGRAVPAWRRGCL 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9803.31587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LD80_9PHAE8.320e-6893.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9803contigEcto-sp8_S_contig9803:1..1471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size345
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_001250.1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145347.354342-CDS-Ecto-sp8_S_contig9803:0..1861681145347.354342-CDS-Ecto-sp8_S_contig9803:0..186Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9803 1..186 +
1681145347.3710349-CDS-Ecto-sp8_S_contig9803:1312..14711681145347.3710349-CDS-Ecto-sp8_S_contig9803:1312..1471Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9803 1313..1471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9803.31587.1prot_Ecto-sp8_S_contig9803.31587.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9803 1..1471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9803.31587.1

>prot_Ecto-sp8_S_contig9803.31587.1 ID=prot_Ecto-sp8_S_contig9803.31587.1|Name=mRNA_Ecto-sp8_S_contig9803.31587.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=115bp
MFSQADIEDRAKRDVHRARARRQEVALKELHQKEAEQRKKTAACGRWVRV
EADRSRLLRGTKASKERMLEPEDLDDLEDQRAGLPAHCSPIAISGRDLRF
NQGRAVPAWRRGCL*
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mRNA from alignment at Ecto-sp8_S_contig9803:1..1471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9803.31587.1 ID=mRNA_Ecto-sp8_S_contig9803.31587.1|Name=mRNA_Ecto-sp8_S_contig9803.31587.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1471bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9803:1..1471+ (Ectocarpus species8 EcLAC_412)
ATGTTCTCCCAGGCGGATATCGAGGACCGCGCGAAGAGAGATGTCCATCG
GGCACGAGCACGACGGCAAGAGGTCGCCTTGAAGGAGTTGCACCAAAAGG
AGGCCGAACAGAGAAAGAAGACCGCGGCGTGCGGGCGGTGGGTCAGGGTT
GAAGCAGACCGCTCCAGGCTCTTAAGGGGGACCAAGGTGAGATTGGGGGG
GGAGGTGCTTGAGGATATAGACTTGAGAGTTGAAATCACTCTAAGTTTAG
TATGTAGGGAGGCGTCAAGATCAGTGGGTCGGGGTTGAGGCACATCGCTC
GCTCCAGATCTCCACCGGGGACAACGGTGAGGGAAGGATAGACTTGATCT
TGGAAAAACTACCAGGATTAGGATTTGGGTGTGTGGGGGGTATTTAGGTT
GAGGGTCGGGATTGAGACAAACCGCTGCATTGCTGTTTACGGGGAATCGC
GGTGAGGTGTGGGTGTTGTCGGGCGGTGACAACCAGTGGAATTGTAGTGC
GGGGTGCGGACTACGTGATGTGCTTGGAGGAGACAAGTGAACTTGGCGTG
CCGAGTGCCGAAAGTGCTGGGACGCGCACTGAGGGTTCCCCGTGGGGTGA
GAGGTTCCATTGCATGTTCTACAACTCAAGCCGCGTTCCTCTGGAGACGG
GAGCATGTTACGAACAGTGTCCCAACCAGTGCACGAGAAAAAAAAGAAGA
CTTCTAGAATTGTTTCTTCATGAGTGCCACCGTTCGAAAAACTATGAATT
ATAGACCCTCGGATGCAAGGGTGCATAGGTCGATGGTCCCTACACTTCCA
AACAGAGTGTTGTTCCTGTAGGGCGCTTTTTTTTTTGTCATTTTGACTCC
GCTTGCAAACTCGCGCAATGGATTCTACAGCAGTACCAAACAGTACTTGG
TTTGCCCGCCCTGCACCCTGCTTGTTGTGTTTCCCGGGTATTTTCCGCGA
GTGGCGGGACTCTCGCTTGGCGTCTCTTCTGGGCTAGCTTGTGACCCACA
ATGAACTCTGCCTCTTCCCTTCCAAGTAGATGATACTTCATACAGAGGTT
GTACCTTGTACTCCTTGCTCTGAAGGAAATACCATCGCTCGAAGACCATG
GCTCGAAGAGCATGTTTACTTGAGCGCAACCGTCTATCTACATAGTAATA
GTAGACCACCCATGGAAGAAGACATGGCAGTTTTCAGCAGGAGGACCGTA
TATATGTTCACTCAACATCCGACGAACCACACCCCGAAACTCACTCTCGG
TTGCTTCATTCAATCTCTCATCTATGTTCCCTTGGAATTCTGTCGGCGCG
CACGTCACCAAGGCCTCGAAGGAAAGGATGCTCGAGCCAGAAGATCTAGA
CGACCTAGAGGACCAGAGGGCGGGCCTCCCCGCGCATTGCTCGCCCATCG
CCATCAGCGGCCGAGACCTACGCTTCAACCAGGGCCGGGCCGTGCCAGCG
TGGAGGCGCGGTTGTTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9803:1..1471+

>mRNA_Ecto-sp8_S_contig9803.31587.1 ID=mRNA_Ecto-sp8_S_contig9803.31587.1|Name=mRNA_Ecto-sp8_S_contig9803.31587.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9803:1..1471+ (Ectocarpus species8 EcLAC_412)
ATGTTCTCCCAGGCGGATATCGAGGACCGCGCGAAGAGAGATGTCCATCG
GGCACGAGCACGACGGCAAGAGGTCGCCTTGAAGGAGTTGCACCAAAAGG
AGGCCGAACAGAGAAAGAAGACCGCGGCGTGCGGGCGGTGGGTCAGGGTT
GAAGCAGACCGCTCCAGGCTCTTAAGGGGGACCAAGGCCTCGAAGGAAAG
GATGCTCGAGCCAGAAGATCTAGACGACCTAGAGGACCAGAGGGCGGGCC
TCCCCGCGCATTGCTCGCCCATCGCCATCAGCGGCCGAGACCTACGCTTC
AACCAGGGCCGGGCCGTGCCAGCGTGGAGGCGCGGTTGTTTGTAG
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