mRNA_Ecto-sp8_S_contig98.31579.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98.31579.1
Unique NamemRNA_Ecto-sp8_S_contig98.31579.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98.31579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98contigEcto-sp8_S_contig98:7448..8955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size738
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001350.1
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145346.668887-CDS-Ecto-sp8_S_contig98:7447..75941681145346.668887-CDS-Ecto-sp8_S_contig98:7447..7594Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98 7448..7594 +
1681145346.6835415-CDS-Ecto-sp8_S_contig98:7882..83741681145346.6835415-CDS-Ecto-sp8_S_contig98:7882..8374Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98 7883..8374 +
1681145346.6972752-CDS-Ecto-sp8_S_contig98:8856..89551681145346.6972752-CDS-Ecto-sp8_S_contig98:8856..8955Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98 8857..8955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98.31579.1prot_Ecto-sp8_S_contig98.31579.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98 7448..8955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98.31579.1

>prot_Ecto-sp8_S_contig98.31579.1 ID=prot_Ecto-sp8_S_contig98.31579.1|Name=mRNA_Ecto-sp8_S_contig98.31579.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=246bp
MALDRFLYHEIEPAAQRIFDAAVLDHAEACRLLDGKPVQAFAGGGGGGGP
PPPPSSTSVRARLPVKGRQGAVTGGAFDRPRIIDFTGGGGGGGGGSYSAR
SKTVPGRRRLLVEDNSRKKEFQEKEVGGGHRGGSSGSRGERAVAAGSGGF
AGDDVLAGAASYGRRERQIGGGGGGVAAAAAAAAAAAAVAARRSDDLEEE
DDDVWDAPLPGRLRATDISAKIVGLSSEIKRRAAAEAGREGHRKQ*
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mRNA from alignment at Ecto-sp8_S_contig98:7448..8955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98.31579.1 ID=mRNA_Ecto-sp8_S_contig98.31579.1|Name=mRNA_Ecto-sp8_S_contig98.31579.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1508bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98:7448..8955+ (Ectocarpus species8 EcLAC_412)
ATGGCCCTGGATCGCTTCCTGTACCACGAAATCGAGCCGGCCGCCCAACG
TATTTTCGACGCGGCCGTGTTGGATCACGCGGAAGCCTGCCGCCTCCTGG
ATGGAAAGCCCGTGCAGGCTTTCGCCGGCGGCGGCGGCGGCGGCGGCGTA
CAAACCGCCTCCTCCAAACACCAGCAGGACGGCCGGGGGGGTTCAAGAGG
AGGGAGCAAGCCGACCATCGTCAGTAGCAACAACGACATTCGGAGCGACC
CCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGGAGATGACGACGTC
GGCGTTGCGACGGGCAAAGCTCCAGGCACTGCACCTGCGACCGCAACAGC
GCCGGCGGCTGCAGTGTCGGGGGCGAGGGGGAATGCTAACCCTACCGAGC
CGCGGCAACGGGCAAAGAGGGCCGGGGTGATCCAGCCGCCGCCGCCGCCG
TCGTCGACCAGCGTGCGCGCTAGATTGCCGGTGAAAGGAAGGCAGGGCGC
CGTCACCGGTGGTGCGTTCGATCGTCCTCGCATCATCGATTTCACCGGCG
GCGGCGGCGGTGGTGGTGGTGGCAGTTACAGTGCTCGCTCGAAGACCGTG
CCCGGTAGGCGCCGCCTCCTCGTTGAAGACAACTCCAGGAAAAAGGAGTT
CCAGGAGAAGGAGGTGGGAGGGGGACACAGGGGTGGATCGAGCGGTTCGC
GAGGAGAGCGGGCGGTGGCTGCGGGTTCTGGTGGCTTTGCTGGCGACGAC
GTCCTGGCGGGAGCGGCGTCATATGGACGAAGGGAGAGGCAGATAGGCGG
TGGCGGCGGTGGTGTTGCTGCTGCTGCTGCCGCTGCTGCTGCCGCTGCTG
CTGTTGCTGCTAGGAGGAGTGACGACCTCGAGGAGGAAGACGATGACGTG
TGGGATGCGCCGCTTCCTGGCAGGCTGGTGAGAAAAAAAACACGTTTTGG
GGAAGTTGGGTGTGCGGAAGGGGTCATGCCACGTTTCGCGTGTTTTTGGG
AGTACTACGCCCCGACATGAATCAATCGAAACGGGTTGAGCACCGGCACG
GATCCAGGCAGCAGCGGTACGTGTTACGACAGAAGGCCACCGGTGAACCG
TTCTCTTCCATATAGAATAACATCAGTGTTTCCAAGTCAGTTATTGTTTC
CTTACAACGTGGGAGAAACCAGTGGTATCACCTCCCGCGGGTCGGTGTCG
GCCACCCTCCCATACTCCTTTCTTTTATCGAGGAGAAGCTCTTCTTCTCT
CTCATCCCTTGCTGTTGTCGCAGCTGAGAACCCTCTTTAAAGACCATTCG
AAGTCTCAAGTCTCCCTGTTGTATGGCTGTATCCATCGGCCACTCTCTCT
CTCTCTCTCTCTTTCTCTCTCTCTGTGTGTGTGTGTTCCCGCTACACTCG
TTTTCATAGCGTGCGACCGATATCAGCGCCAAGATCGTGGGACTGTCATC
CGAGATCAAGCGCCGGGCAGCAGCCGAGGCCGGAAGAGAAGGCCATCGCA
AGCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98:7448..8955+

>mRNA_Ecto-sp8_S_contig98.31579.1 ID=mRNA_Ecto-sp8_S_contig98.31579.1|Name=mRNA_Ecto-sp8_S_contig98.31579.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98:7448..8955+ (Ectocarpus species8 EcLAC_412)
ATGGCCCTGGATCGCTTCCTGTACCACGAAATCGAGCCGGCCGCCCAACG
TATTTTCGACGCGGCCGTGTTGGATCACGCGGAAGCCTGCCGCCTCCTGG
ATGGAAAGCCCGTGCAGGCTTTCGCCGGCGGCGGCGGCGGCGGCGGCCCG
CCGCCGCCGCCGTCGTCGACCAGCGTGCGCGCTAGATTGCCGGTGAAAGG
AAGGCAGGGCGCCGTCACCGGTGGTGCGTTCGATCGTCCTCGCATCATCG
ATTTCACCGGCGGCGGCGGCGGTGGTGGTGGTGGCAGTTACAGTGCTCGC
TCGAAGACCGTGCCCGGTAGGCGCCGCCTCCTCGTTGAAGACAACTCCAG
GAAAAAGGAGTTCCAGGAGAAGGAGGTGGGAGGGGGACACAGGGGTGGAT
CGAGCGGTTCGCGAGGAGAGCGGGCGGTGGCTGCGGGTTCTGGTGGCTTT
GCTGGCGACGACGTCCTGGCGGGAGCGGCGTCATATGGACGAAGGGAGAG
GCAGATAGGCGGTGGCGGCGGTGGTGTTGCTGCTGCTGCTGCCGCTGCTG
CTGCCGCTGCTGCTGTTGCTGCTAGGAGGAGTGACGACCTCGAGGAGGAA
GACGATGACGTGTGGGATGCGCCGCTTCCTGGCAGGCTGCGTGCGACCGA
TATCAGCGCCAAGATCGTGGGACTGTCATCCGAGATCAAGCGCCGGGCAG
CAGCCGAGGCCGGAAGAGAAGGCCATCGCAAGCAGTAG
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