mRNA_Ecto-sp8_S_contig9799.31578.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9799.31578.1
Unique NamemRNA_Ecto-sp8_S_contig9799.31578.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9799.31578.1 vs. uniprot
Match: D8LRC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC7_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 2.130e-144
Identity = 230/264 (87.12%), Postives = 231/264 (87.50%), Query Frame = 1 
Query:    4 QRTFIEVLRDMEPAEEETEAKLTPAQIMEFFEACDTLLALPGKPTAETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRCASMARQEAMLGKEELTKRMHMHQATAMKEHKMAMELSALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIAKLKMLTRHLKTAQDGGHDHDHGDHGXXXXXXXXXXXXXXXXXXXXXXQPGTAAAQGQSGSGDQVS 795
            QRTFIEVLRDMEPAEEETEAKLTPAQIMEFFEACDTLLALP     ETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRCASMARQEAMLGKEELTKRMH+HQATAMKEHKMAMELSALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIAKLKMLTRHLK AQDGGHDH H  HG                      QPGTAAAQGQSGS DQ S
Sbjct:  182 QRTFIEVLRDMEPAEEETEAKLTPAQIMEFFEACDTLLALP-----ETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRCASMARQEAMLGKEELTKRMHVHQATAMKEHKMAMELSALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIAKLKMLTRHLKMAQDGGHDHGHA-HG----------------------QPGTAAAQGQSGSRDQGS 417
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BLAST of mRNA_Ecto-sp8_S_contig9799.31578.1 vs. uniprot
Match: A0A835ZBF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.610e-27
Identity = 74/219 (33.79%), Postives = 112/219 (51.14%), Query Frame = 1 
Query:    1 CQRTFIEVLRDMEPAEEE--TEAKLTPAQIMEFFEACDTLLALPGKPTAETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRCASMARQEAMLGKEELTKRMHMHQATAMKEHKMAMELSALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIAKLKMLTRHLKTAQDGGH 651
            C +T+I +     P+ +   TE  +T  ++MEFF +C +L+  P     ETK  L + F ETQ PP++ I+ MQR ML  LG  PDHG++CLN        D  +    Q+F   A  A QEA++G ++    M        ++ ++  E +A+    +    KRV+  Q   A A+ +L     R+AY+K +P  EQ D+AKL ML       + GGH
Sbjct:  131 CNQTYITIFTQGRPSADSLRTEGDMTEDEVMEFFNSCISLMGTP-----ETKAKLAQRFAETQEPPNDYIIEMQRDMLACLGIEPDHGISCLNKHVTS--GDADIASGAQRFAMSAQRACQEAVMGTDKFEAHMAQQHEAMQRQRRLVAECAAMTPKEQQAFMKRVATQQVSIARAMASLADDHARIAYVKQLPAAEQDDLAKLNMLMG----GRSGGH 338
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9799.31578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRC7_ECTSI2.130e-14487.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZBF2_9STRA5.610e-2733.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9799contigEcto-sp8_S_contig9799:2303..7042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size798
Hectar predicted targeting categoryother localisation
Exons6
Cds size798
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9799.31578.1prot_Ecto-sp8_S_contig9799.31578.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9799 2303..7042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145346.5760071-CDS-Ecto-sp8_S_contig9799:2302..23441681145346.5760071-CDS-Ecto-sp8_S_contig9799:2302..2344Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9799 2303..2344 -
1681145346.589145-CDS-Ecto-sp8_S_contig9799:2617..27911681145346.589145-CDS-Ecto-sp8_S_contig9799:2617..2791Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9799 2618..2791 -
1681145346.6008224-CDS-Ecto-sp8_S_contig9799:3599..37731681145346.6008224-CDS-Ecto-sp8_S_contig9799:3599..3773Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9799 3600..3773 -
1681145346.6124167-CDS-Ecto-sp8_S_contig9799:4708..47781681145346.6124167-CDS-Ecto-sp8_S_contig9799:4708..4778Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9799 4709..4778 -
1681145346.623206-CDS-Ecto-sp8_S_contig9799:5907..61081681145346.623206-CDS-Ecto-sp8_S_contig9799:5907..6108Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9799 5908..6108 -
1681145346.6385558-CDS-Ecto-sp8_S_contig9799:6905..70421681145346.6385558-CDS-Ecto-sp8_S_contig9799:6905..7042Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9799 6906..7042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9799.31578.1

>prot_Ecto-sp8_S_contig9799.31578.1 ID=prot_Ecto-sp8_S_contig9799.31578.1|Name=mRNA_Ecto-sp8_S_contig9799.31578.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=266bp
CQRTFIEVLRDMEPAEEETEAKLTPAQIMEFFEACDTLLALPGKPTAETK
ESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDD
EKLQMRLQQFMRCASMARQEAMLGKEELTKRMHMHQATAMKEHKMAMELS
ALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIA
KLKMLTRHLKTAQDGGHDHDHGDHGHDNGHDHGHGHGHGHDHGHAHGQPG
TAAAQGQSGSGDQVS*
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mRNA from alignment at Ecto-sp8_S_contig9799:2303..7042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9799.31578.1 ID=mRNA_Ecto-sp8_S_contig9799.31578.1|Name=mRNA_Ecto-sp8_S_contig9799.31578.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4740bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9799:2303..7042- (Ectocarpus species8 EcLAC_412)
TGTCAGCGCACGTTCATCGAGGTGCTGCGCGATATGGAGCCGGCGGAGGA
AGAAACGGAGGCAAAGCTTACCCCTGCGCAGATCATGGAGTTTTTCGAGG
CTTGCGACACACTCCTCGCATTACCAGGCAAGCCAACGTGACAAATGAAA
AGCGTGTGTGTACGGGTGCTGGGAGCATTGGGTCGAGAGGAGGAGGGGAG
CTTTTGGGTGTTCGCACTATGAAAGGCAATGAGGTTTTTTTGAGACGTTG
CCTGTTCGGTTGTGCAGGGGAACCCCCAACGTGCTCAAGGAGATCGTGCG
TGCGAGAGGGCAGAGGAGGGTTTCGGTGTATTGCTTTGTTTTGTTCGAGC
TAGCTAAAGGTACAGTAATTCATGGGTATTCGTGTGGCTTGCTGTGGCTA
CGCTTGGTTGTCGACGGCATTCAATACCTTGTCGAGGGGTGCTGCCGCGC
TGATTGGACGGCGTGTTGGCCAGAGCACGCTAACTGCTAGAACCGGTACG
GCAAAGGATCTCCGCTTCACACCCTGTTGACTGTTAACACGGTCAGCCCG
AACGTCGCCCTTTCACCAAGACCGACGCTTCGTTACGAAGACATCGCCAT
CGCGGGCCGGTCGATACCAGCTGCTTGCTTGGAGTCGGTCTTTCGGCGGC
GTAGGTCACGCAATGACTTTTGGGTGTCTAATCTCGCAGTAAAGTGCACG
TTTATTACCAGCACTACACATCTATAGATTACCTTTTTTTTTCTTCCCAT
TTCAGATGTTTTTTTCGCTACAGCTGCCTGTGTAGCTAGCTGCCTACCAT
TGCTAGCCCTCACTCTGGTGGGTTCTGACAGTATTGTCTTCCTTCTGGCG
CCTAACCCCACCCCGCTCCACGCCTGCTCCCGCAACTCCCTCCGTCTACC
TCGCGGGGGCGCCGCCGCCGTTGACCGTGTCGAGTGCAGAAACGAAGGAG
TCGCTGCGAAAAGAGTTCCTCGAGACGCAGGTCCCGCCGGACGAGACCAT
CGTGGGGATGCAGAGGAGCATGCTGCGCACCCTTGGCTTCTCCCCGGACC
ACGGGGTGGCCTGCCTCAACGCCTTCTCGAAAGACTTCCCGGACGACGAG
AAGCTGCAGATGCGCCTGCAGCAGTTTATGCGATGGTGCGAGGGGCAGTG
CTACGATAGACGAAACTGCTGTCTGTTGTAGCGCCGGTTGTGGACTTTTT
CCGTCTTTCGTGGGTGGTTTGAGAGAGAGACACCGCCGTCTTGCGTTGCA
GGAGAGGGCTCGCCCATTCACCTGCTGATATCCATACGTGGCAGCAGTGT
GCGGGTGTTCACGAAACGGCTTCGGTGCGCTCGCGCTGATGTCTCCTTCC
TGGGCACAGGAGAAAATGTCTGGGAAGTCGGTTGTTGCCGTGCTGCTTGT
AGTGTGGTCAGTCAAGGGGTAAGTGACGGCGCGGGACTTCCGTTGTTTTT
TTTTTTGCTGTGACGGTCAGCGTGTATCCACGGGGGGTTTCGTTTCTTTA
TCCGGTGAACTGTGACGCAAGATCGGCAGCAGCAACAACAACAAAAAGTC
GAAGTCGTGTAGTCACACGCTGAGGAAGGCTATCCTGCTGTATTAGCTCA
GCGGTCGTTGCTCCAGCCAAGGGGCCGATCTCCACAGCCTAGCTATTACA
GCTTACATCGCGTTGGACGCGAAGGTGTTAATCCTCATCCTCATCAAGTG
TTGCTGATATTTTTGAATGAAAGTGAATGGACGGCAGTATGTTGGACGGA
TTCGAACCACAGCCTCGAGCAACGTTTCAAGCCAACTGTAGACACGTAAA
CAGGGGTAGTGGTGCCACACGCAGGACACCGGCGGCAGCGTGTGCCGCGT
GGTAGTGCCCGAAGAGGTGGGTTACAGCCTATAGTTGTTTTGGAGCGGTA
CCGTACGATCGCTGGCCGTCTACCACTGAAGCCGAAGGGTCGAGATGCTG
CCTATGCGTTGCGCCTCGCCCATTTTCATCCCGGCTCGTTTTGAGGATGT
AGACCGGAGCAATTGGCGGAAGGTCCCACGATCAACCGACCAAGTGTCAA
AAATATCTTGCTGTAACCGTCGCGCTGGTTTCTTCTCGCTCTGGCTCGCA
AGTTGGTGTGATGGTGTTGGTGTTGGTGTTGATGGTGTGATGTTGCTGGT
GCTTGAAATTGGTGTTGTTATTGTTGAGGTTGAGTGGATCTGCTCTTTAA
CACCCACAATTTTTCACGTCATCTTGTCCTTCCCCGGTGTTCTTTTGGTG
CTCTTTGTTCTCAGCGCGAGCATGGCGCGGCAGGAGGCCATGCTTGGTAA
GGAGGAGTTGACCAAGAGGATGCACATGCACCAGGTGGGAAAATAGATCA
CGACGGTGGTTTGATTTGTTGCACAGTCTTTTGCAGCGAAACAAAACTCT
TTTTCATTCGTCGATCTCTCTCTGTCTCTCTGTCTCGGCATCTTCTTCCC
TTGCCTGTGGGGCTCTCTGACACGTTTTGTTTGCAGCCCCAGGAACCACG
ATATTTTTATAGTTTTGGTTGCTCCTGGCTCATGTACGCTATACCAAAGA
TGGCGGTTTCGCAGGACATTACGAAGCCTTCTCGCCCGTAACCGCGTGTC
CAAGAGATAGACCGGACGACAACCGTGTGATTTCTATGGTGCCGAAGGAG
CAAATTTATCGGCAACGTGTTTCGTGTCGCCACGTCGCCTCCGCACCATG
AGGCAGTGACCTCCGTTTTATAGCTCGCGTCTCGTTCGAATCTTGATCGT
GACGCCCGGATGCGGAGCCTTGTCAGGCAAAGAAAAGATCAAAGAACAAG
CAGGAAAGAAAAGAAACCTCTCGCACGCTGGAGTAAAAGAAAGCGGCGTT
TCATGCCGATCTATTATAGCAGTGGACGCCGGCGAAGTCTTGGTTTGTTG
TTCTCCGAAACCAGTTAAAACATGACGAGGAACACGTAGTCCCCGCGCTT
GCCGTACTTGTACCACGTGTTCGCCCATTATTGCTCTTGTCTGCTTAAGT
GTTCCCATTCACATCGGCCCGGGTGCAGGGGGCTGCAACACACGCTTGTC
CGGCGCAGCGCAGCGCCCGATAATTCTGACACAGAGGTAGCTTACACCCA
TGACTACACTGACATAGAGGTAACTTCGATCCATATCTACAATTCCATCG
GTTAAGTAGGTATCTGACATCCACAACTACACTTTGCATTTTTTGAAGAT
AGAAATATCTTTCTAAATGCATGCAACCCCCAACGCTCGTGAAAACTTGT
CTTGTTGTTTTGTACACAGGCTACCGCGATGAAGGAACACAAGATGGCGA
TGGAGCTGAGTGCTCTGGACGAGGCGGGCAGGGCCGACCTGACCAAGAGG
GTGTCGGAGATGCAGCGCAGGCACGCCCTGGCGGTGATGACGCTCACCAC
CCAGGAGGAGCGCCTCGCGTACATCAAGGGCATCCCCACGGAAGTGAGCT
ATTAGCAATTAGCAGCCGCACCAACACCAGTTGTTTTGGTGTGCAGGTTT
TGATGTGGGACGTTGATCTCCGACACTCTGTTTAGGAACAGGTTTTGCCT
TTTCAGCTTGCCTCAGGGCTCGGTGATATGATGCCGTCGTGTCCTGAACA
CATCCCAAGACTCGAAAAGTCGTCTCGACATGAGCACAGCTGCTGCTCTG
TGGAAAATGTGTGCCAGCCTCAGCAGGTGTGGCGCAAACTGATCATGGTT
TCTCGTCAGCCCCATGGCCTGACAGAGGGTGCTGCTCATGGTTCTTTGCC
CACCCACCCATCCATCCCTAGAGCCAATCCAGCTGCACGTCTTGTATTCT
GCGGCCGGAGCGTTCGAAAACAGCCGAAGGTTTGCTTGGCATTCCCTTCT
TTTAGTTGGTTCCCGGTATGCTGCCGTCGCTGTGGCGGCTGCCGATTTTA
CCAACGGCTGGGCCAGGGGGTTTGGTCGCGCAAGATGTTGCGTTTACCAC
CGCATTTGTCTCGTCGATCAAGCGGGTTGCGTATCAAAGCAGACCCTTTT
TGCCGTGACCACGGAATGCTTCGACAAAGCAGAGGGGTGACGCAGACAAG
TATGAGGATTTGGTGGCGTTCGCGTTGCAGTGGATGGCATCTTGCTGTCC
TGGTGTTGGGAAGCGGAGGAAGGTCTTCGCGAGAATGCCCCCCTCTTGCC
CCCCCCGCAGGTATCGGCCTCAAAGCCCCCGTGTGTCCGTGCGTGTGCCG
CGTTAACGTTAACTTGTGTTTCGTTTCGCGTGGTCTTTTCGACCCGAGCA
GGAGCAGTGGGACATCGCCAAGCTCAAGATGCTCACCAGGCACCTCAAGA
CGGCGCAAGACGGCGGCCACGACCACGACCACGGCGACCACGGCCACGAC
AACGGCCACGACCACGGCCACGGCCACGGCCACGGCCACGACCACGGCCA
CGCACATGGACAGCCGGGCACAGCAGTAAGTTATCGGTCAGCTGGTGTTG
TCACGATGGCCGATAGTGTCGTCTGCGTTGTTTTGTACTTACTTAAATGT
TTTGCGAGAGCTGCTTGTATGTGCTCACCCTCCTCGCGGTACTAGCCGCC
CCTCAACAGCAGACATTTTATGTCTCGTGTTTCGCCCTGATCCCCCCCCC
CCCTCGCCTCACTTCCCTCTTCTGCTTTATTGGCACGTCTGCATCATGGG
GGTCACCGGCATTGCGTTTCCCGGCCAACGCCGACGCCGTCGCCCCAGGC
TGCTCAAGGGCAGAGCGGTTCGGGCGACCAGGTTTCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9799:2303..7042-

>mRNA_Ecto-sp8_S_contig9799.31578.1 ID=mRNA_Ecto-sp8_S_contig9799.31578.1|Name=mRNA_Ecto-sp8_S_contig9799.31578.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9799:2303..7042- (Ectocarpus species8 EcLAC_412)
TGTCAGCGCACGTTCATCGAGGTGCTGCGCGATATGGAGCCGGCGGAGGA
AGAAACGGAGGCAAAGCTTACCCCTGCGCAGATCATGGAGTTTTTCGAGG
CTTGCGACACACTCCTCGCATTACCAGGCAAGCCAACTGCAGAAACGAAG
GAGTCGCTGCGAAAAGAGTTCCTCGAGACGCAGGTCCCGCCGGACGAGAC
CATCGTGGGGATGCAGAGGAGCATGCTGCGCACCCTTGGCTTCTCCCCGG
ACCACGGGGTGGCCTGCCTCAACGCCTTCTCGAAAGACTTCCCGGACGAC
GAGAAGCTGCAGATGCGCCTGCAGCAGTTTATGCGATGCGCGAGCATGGC
GCGGCAGGAGGCCATGCTTGGTAAGGAGGAGTTGACCAAGAGGATGCACA
TGCACCAGGCTACCGCGATGAAGGAACACAAGATGGCGATGGAGCTGAGT
GCTCTGGACGAGGCGGGCAGGGCCGACCTGACCAAGAGGGTGTCGGAGAT
GCAGCGCAGGCACGCCCTGGCGGTGATGACGCTCACCACCCAGGAGGAGC
GCCTCGCGTACATCAAGGGCATCCCCACGGAAGAGCAGTGGGACATCGCC
AAGCTCAAGATGCTCACCAGGCACCTCAAGACGGCGCAAGACGGCGGCCA
CGACCACGACCACGGCGACCACGGCCACGACAACGGCCACGACCACGGCC
ACGGCCACGGCCACGGCCACGACCACGGCCACGCACATGGACAGCCGGGC
ACAGCAGCTGCTCAAGGGCAGAGCGGTTCGGGCGACCAGGTTTCTTGA
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