mRNA_Ecto-sp8_S_contig97969.31574.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97969.31574.1
Unique NamemRNA_Ecto-sp8_S_contig97969.31574.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Match: D7FQ21_ECTSI (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ21_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 8.340e-30
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query:    1 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQ 156
            GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQ
Sbjct:   95 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQ 146          
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Match: A0A7Y2X8B5_9BACT (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Ignavibacteriaceae bacterium TaxID=2651163 RepID=A0A7Y2X8B5_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 1.850e-22
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    1 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQVD 162
            GYAGGT+ENPTY ++C+G TGHAEV  + YDP V+TFDELLEVFWKTHDPT ++
Sbjct:   59 GYAGGTVENPTYEEICTGTTGHAEVTQITYDPGVITFDELLEVFWKTHDPTTLN 112          
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Match: A0A537WTQ4_9ACTN (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537WTQ4_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 2.140e-22
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    1 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQVD 162
            GY+GGT+E+PTYR VC+GRTGHAEVV L +DP +VT+D+LLEVFW  HDPTQVD
Sbjct:   42 GYSGGTVEDPTYRQVCTGRTGHAEVVQLVFDPDLVTYDQLLEVFWAMHDPTQVD 95          
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Match: A0A7W1GJE8_9BACT (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W1GJE8_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 2.440e-22
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    1 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQVD 162
            GY+GG MENPTYRDVC+GRTGHAEVV +EYDP  V ++ELL VFW+ HDPTQ++
Sbjct:   34 GYSGGNMENPTYRDVCTGRTGHAEVVEVEYDPAQVRYEELLRVFWENHDPTQLN 87          
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Match: A0A7W0ZJ27_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W0ZJ27_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 8.430e-22
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    1 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQVD 162
            GY GG+M NPTYRDVC+GRTGHAEVV +EYDPT V ++ELL VFW  HDPTQ++
Sbjct:   41 GYLGGSMPNPTYRDVCTGRTGHAEVVEVEYDPTQVAYEELLNVFWDNHDPTQLN 94          
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Match: A0A1W2GL41_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Reichenbachiella faecimaris TaxID=692418 RepID=A0A1W2GL41_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 8.530e-22
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    1 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQVD 162
            GY GG ++NPTY++VCSG TGHAEV+ + YDP+V+TFDELLEVFWKTHDPT ++
Sbjct:   52 GYMGGEVKNPTYKEVCSGTTGHAEVLQITYDPSVITFDELLEVFWKTHDPTTLN 105          
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Match: A0A7W0GT74_9BACT (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W0GT74_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 8.860e-22
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1
Query:    1 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQ 156
            GY GG +ENP+YRDVC+GRTGHAEVV +EYDP++V+++ELL VFW+ HDPTQ
Sbjct:   30 GYLGGNVENPSYRDVCTGRTGHAEVVEVEYDPSIVSYEELLRVFWENHDPTQ 81          
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Match: A0A3B8IW54_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3B8IW54_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 1.130e-21
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    1 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQVD 162
            GY GGT  NPTYR+VCSG TGHAEV  + YDP+V+TFDELLEVFW THDPT ++
Sbjct:   33 GYTGGTTTNPTYREVCSGTTGHAEVTRITYDPSVITFDELLEVFWVTHDPTTLN 86          
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Match: A0A2W4QVE1_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2W4QVE1_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 1.370e-21
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    1 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQVD 162
            GY+GGT+ENPTY+ VC+G TGHAEVV + YDP+V+T+DELLE+FW THDPT ++
Sbjct:   69 GYSGGTVENPTYKQVCTGTTGHAEVVQITYDPSVITYDELLEIFWHTHDPTTLN 122          
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Match: UPI0019A03DC2 (Peptide-methionine (S)-S-oxide reductase MsrA n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI0019A03DC2)

HSP 1 Score: 90.9 bits (224), Expect = 1.700e-21
Identity = 37/51 (72.55%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 GYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPT 153
            GY+GG ++NPTYR+VCSG TGHAEV+ + YDP+V+T+DELLEVFW+THDPT
Sbjct:   51 GYSGGKIKNPTYREVCSGLTGHAEVIQITYDPSVITYDELLEVFWETHDPT 101          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97969.31574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ21_ECTSI8.340e-30100.00Peptide-methionine (S)-S-oxide reductase n=1 Tax=E... [more]
A0A7Y2X8B5_9BACT1.850e-2272.22Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A0A537WTQ4_9ACTN2.140e-2274.07Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A0A7W1GJE8_9BACT2.440e-2272.22Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A0A7W0ZJ27_9BACT8.430e-2272.22Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A1W2GL41_9BACT8.530e-2270.37Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A7W0GT74_9BACT8.860e-2271.15Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A0A3B8IW54_9BACT1.130e-2172.22Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A2W4QVE1_9BACT1.370e-2168.52Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
UPI0019A03DC21.700e-2172.55Peptide-methionine (S)-S-oxide reductase MsrA n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97969contigEcto-sp8_S_contig97969:141..562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score81.3
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog945713.IALB_0205
Preferred namemsrA
Model size162
KEGG koko:K07304
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.peptide-methionine (S)-S-oxide reductase activity
EggNOG OGsCOG0225@1,COG0225@2
Ec32 ortholog descriptionmethionine sulfoxide reductase
Ec32 orthologEc-01_007800.1
EC1.8.4.11
Cds size144
COG Functional cat.O
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145346.2469463-CDS-Ecto-sp8_S_contig97969:140..2631681145346.2469463-CDS-Ecto-sp8_S_contig97969:140..263Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97969 141..263 -
1681145346.2691057-CDS-Ecto-sp8_S_contig97969:523..5441681145346.2691057-CDS-Ecto-sp8_S_contig97969:523..544Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97969 524..544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145346.2837076-UTR-Ecto-sp8_S_contig97969:544..5621681145346.2837076-UTR-Ecto-sp8_S_contig97969:544..562Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97969 545..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97969.31574.1prot_Ecto-sp8_S_contig97969.31574.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97969 141..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97969.31574.1

>prot_Ecto-sp8_S_contig97969.31574.1 ID=prot_Ecto-sp8_S_contig97969.31574.1|Name=mRNA_Ecto-sp8_S_contig97969.31574.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
MENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQVD
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mRNA from alignment at Ecto-sp8_S_contig97969:141..562-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97969.31574.1 ID=mRNA_Ecto-sp8_S_contig97969.31574.1|Name=mRNA_Ecto-sp8_S_contig97969.31574.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=422bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97969:141..562- (Ectocarpus species8 EcLAC_412)
GGATACGCGGGCGGGACCATGGAAAATCCCACGTATCGGGTAAGTTCTAC ACACGGACCCGTTTGCTGAGGCTTTCACCAAATCGATGCTTGCACGAAGT AGTCGACAATTGCTTTTCTTGCTTGGTACATAGATGTGCACTTCCGGTAG ATAGTTTCCTTGCACTCACCTGTTGCACATAGCCGGAAGTGCTGCGACAA AGCAAGAGTATGCACCTGACAGAAACAGGTTGATTATCTTGTCTTCGCCT GTCTTTGCACTCCGCACGTTTCTTAATTTTTGAAATATCCCGCCCGCAGG ACGTTTGTTCGGGACGGACGGGGCACGCGGAAGTAGTGCTGCTGGAGTAC GACCCCACGGTCGTTACGTTCGACGAATTGCTGGAAGTGTTTTGGAAGAC CCACGACCCCACACAGGTAGAT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97969:141..562-

>mRNA_Ecto-sp8_S_contig97969.31574.1 ID=mRNA_Ecto-sp8_S_contig97969.31574.1|Name=mRNA_Ecto-sp8_S_contig97969.31574.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97969:141..562- (Ectocarpus species8 EcLAC_412)
ATGGAAAATCCCACGTATCGGGACGTTTGTTCGGGACGGACGGGGCACGC
GGAAGTAGTGCTGCTGGAGTACGACCCCACGGTCGTTACGTTCGACGAAT
TGCTGGAAGTGTTTTGGAAGACCCACGACCCCACACAGGTAGAT
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