mRNA_Ecto-sp8_S_contig9796.31572.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9796.31572.1
Unique NamemRNA_Ecto-sp8_S_contig9796.31572.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9796.31572.1 vs. uniprot
Match: A0A6H5JFN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN1_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.800e-45
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 2 
Query:   56 QVYGPLPNPSPSERELQRFKGGMGCLANPRSSVLELGNYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKDATDPAVATF 295
            +VYGP PNPSPSERELQRFKGGMGCLANPRSS+LELGNYLDAP PEELVSVTGWSVLKLSGEAGLTGFRK ATDPAVATF
Sbjct:  152 EVYGPSPNPSPSERELQRFKGGMGCLANPRSSILELGNYLDAPTPEELVSVTGWSVLKLSGEAGLTGFRKGATDPAVATF 231
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BLAST of mRNA_Ecto-sp8_S_contig9796.31572.1 vs. uniprot
Match: D8LJK3_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 5.940e-45
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 2 
Query:   56 QVYGPLPNPSPSERELQRFKGGMGCLANPRSSVLELGNYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKDATDPAVATF 295
            +VYGPLPNPSPSE+ELQRFKGGMGCLANPRSSVLELG+YLDAPPPEELVSVTGWSVLKLSGEAGLTGFRK ATDPAVATF
Sbjct:  302 EVYGPLPNPSPSEKELQRFKGGMGCLANPRSSVLELGSYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKYATDPAVATF 381
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BLAST of mRNA_Ecto-sp8_S_contig9796.31572.1 vs. uniprot
Match: A0A6H5JTT5_9PHAE (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.400e-33
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:   56 QVYGPLPNPSPSERELQRFKGGMGCLANPRSSVLELGNYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKDATDPAVATF 295
            +VYGP  NPSPSERELQRFK GMGCLANPRS++L+L  YLDAPPPEELVSV+G SV   SG+AG TGFRKDATDPAVATF
Sbjct:  330 EVYGPSSNPSPSERELQRFKSGMGCLANPRSAILQLDKYLDAPPPEELVSVSGSSV---SGDAGPTGFRKDATDPAVATF 406
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BLAST of mRNA_Ecto-sp8_S_contig9796.31572.1 vs. uniprot
Match: D7FNS9_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS9_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.120e-24
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 2 
Query:   59 VYGPLPNPSPSERELQRFKGGMGCLANPRSSVLELGNYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKDATDPAVATF 295
            V  PLPNPS  EREL+RFK G+GCL +  +  LELG YL  PPP ELVS  GWS+L+L+G  GLTGF   +++PAVA F
Sbjct:  195 VKDPLPNPSVDERELERFKNGLGCLESTNAFELELGGYLGTPPPSELVSTNGWSILQLAGAPGLTGFGNSSSNPAVAVF 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9796.31572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JFN1_9PHAE1.800e-4593.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJK3_ECTSI5.940e-4595.00SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JTT5_9PHAE1.400e-3380.00SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
D7FNS9_ECTSI5.120e-2459.49SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9796contigEcto-sp8_S_contig9796:150..444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size296
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145346.152095-UTR-Ecto-sp8_S_contig9796:149..2701681145346.152095-UTR-Ecto-sp8_S_contig9796:149..270Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9796 150..270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145346.1690862-CDS-Ecto-sp8_S_contig9796:270..4441681145346.1690862-CDS-Ecto-sp8_S_contig9796:270..444Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9796 271..444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9796.31572.1prot_Ecto-sp8_S_contig9796.31572.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9796 271..444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9796.31572.1

>prot_Ecto-sp8_S_contig9796.31572.1 ID=prot_Ecto-sp8_S_contig9796.31572.1|Name=mRNA_Ecto-sp8_S_contig9796.31572.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=58bp
MGCLANPRSSVLELGNYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKDA
TDPAVATF
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mRNA from alignment at Ecto-sp8_S_contig9796:150..444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9796.31572.1 ID=mRNA_Ecto-sp8_S_contig9796.31572.1|Name=mRNA_Ecto-sp8_S_contig9796.31572.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=295bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9796:150..444+ (Ectocarpus species8 EcLAC_412)
GCCAAATCCAAATCATTGTGCTGCCCCGCTTGTATCATCGACCGACTAAC
GGAAACAGGTGTATGGCCCGTTACCGAACCCGAGCCCCAGCGAGAGGGAA
CTCCAGCGATTTAAGGGTGGGATGGGCTGCCTCGCGAACCCTCGTTCATC
CGTTCTTGAGCTAGGCAATTACTTGGACGCCCCACCCCCGGAAGAGCTGG
TGTCAGTTACAGGATGGTCGGTGTTGAAACTCTCCGGGGAAGCTGGACTG
ACAGGGTTCAGGAAAGATGCCACCGATCCGGCGGTGGCGACGTTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9796:150..444+

>mRNA_Ecto-sp8_S_contig9796.31572.1 ID=mRNA_Ecto-sp8_S_contig9796.31572.1|Name=mRNA_Ecto-sp8_S_contig9796.31572.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9796:150..444+ (Ectocarpus species8 EcLAC_412)
ATGGGCTGCCTCGCGAACCCTCGTTCATCCGTTCTTGAGCTAGGCAATTA
CTTGGACGCCCCACCCCCGGAAGAGCTGGTGTCAGTTACAGGATGGTCGG
TGTTGAAACTCTCCGGGGAAGCTGGACTGACAGGGTTCAGGAAAGATGCC
ACCGATCCGGCGGTGGCGACGTTC
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