mRNA_Ecto-sp8_S_contig97946.31570.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97946.31570.1
Unique NamemRNA_Ecto-sp8_S_contig97946.31570.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97946.31570.1 vs. uniprot
Match: A0A6H5KRL9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRL9_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 3.400e-39
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:    1 RYNDKRTPSWTDRILWRGFEDDERLDAHPQQEGSPRGQAVSGAGRAVNSTFAAVQEVIASDHEPVFCVLGLP 216
            RYNDKRTPSWTDRILWRGFEDDERLDAHPQQEGSPRGQ VSGAGRA+NSTFA+VQEVIASDHEPVFCVLGLP
Sbjct:  554 RYNDKRTPSWTDRILWRGFEDDERLDAHPQQEGSPRGQPVSGAGRAINSTFASVQEVIASDHEPVFCVLGLP 625
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BLAST of mRNA_Ecto-sp8_S_contig97946.31570.1 vs. uniprot
Match: A0A0D0BI22_9AGAM (IPPc domain-containing protein n=1 Tax=Suillus luteus UH-Slu-Lm8-n1 TaxID=930992 RepID=A0A0D0BI22_9AGAM)

HSP 1 Score: 50.1 bits (118), Expect = 3.440e-5
Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 1 
Query:    1 RYNDKRTPSWTDRILWRGFEDDERLDAHPQQEGSPRGQAVSGAGRAVNSTFAAVQEVIASDHEPVFCVLGLPLPL 225
            RYN KRTPSWTDRI++           H     +P   +++      N  + ++   + SDH+PV C+L LP P+
Sbjct:  289 RYNTKRTPSWTDRIMYA---------THTDSPTTPEKSSIT------NILYTSIPSYVTSDHKPVVCLLQLPPPI 348
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BLAST of mRNA_Ecto-sp8_S_contig97946.31570.1 vs. uniprot
Match: A0A1B7MXC5_9AGAM (DNase I-like protein n=1 Tax=Rhizopogon vinicolor AM-OR11-026 TaxID=1314800 RepID=A0A1B7MXC5_9AGAM)

HSP 1 Score: 49.7 bits (117), Expect = 4.700e-5
Identity = 27/76 (35.53%), Postives = 38/76 (50.00%), Query Frame = 1 
Query:    1 RYNDKRTPSWTDRILWRGFEDDERLDAHPQQEGSPRGQAVSGAGRAVNSTFAAVQEVIASDHEPVFCVLGLPLPLP 228
            RYN KRTPSWTDRI++           H     +P    ++      N  + ++   + SDH+PV C+L LP P P
Sbjct:  289 RYNTKRTPSWTDRIMYA---------THTDSPDTPEKSNIT------NILYTSIPSYVTSDHKPVVCLLLLPPPTP 349
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97946.31570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRL9_9PHAE3.400e-3995.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0D0BI22_9AGAM3.440e-534.67IPPc domain-containing protein n=1 Tax=Suillus lut... [more]
A0A1B7MXC5_9AGAM4.700e-535.53DNase I-like protein n=1 Tax=Rhizopogon vinicolor ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97946contigEcto-sp8_S_contig97946:328..567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size240
Hectar predicted targeting categoryother localisation
Exons1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145346.081491-CDS-Ecto-sp8_S_contig97946:327..5671681145346.081491-CDS-Ecto-sp8_S_contig97946:327..567Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97946 328..567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97946.31570.1prot_Ecto-sp8_S_contig97946.31570.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97946 328..567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97946.31570.1

>prot_Ecto-sp8_S_contig97946.31570.1 ID=prot_Ecto-sp8_S_contig97946.31570.1|Name=mRNA_Ecto-sp8_S_contig97946.31570.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=80bp
RYNDKRTPSWTDRILWRGFEDDERLDAHPQQEGSPRGQAVSGAGRAVNST
FAAVQEVIASDHEPVFCVLGLPLPLPREIV
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mRNA from alignment at Ecto-sp8_S_contig97946:328..567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97946.31570.1 ID=mRNA_Ecto-sp8_S_contig97946.31570.1|Name=mRNA_Ecto-sp8_S_contig97946.31570.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=240bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97946:328..567+ (Ectocarpus species8 EcLAC_412)
AGGTACAATGACAAGCGGACCCCGTCATGGACCGACCGCATCTTGTGGCG
AGGCTTTGAAGACGACGAGCGCCTTGACGCCCATCCCCAACAAGAAGGCT
CTCCTAGAGGACAAGCTGTTTCTGGCGCTGGTCGTGCTGTCAATAGCACC
TTCGCTGCGGTACAGGAAGTGATCGCGTCGGACCATGAGCCTGTCTTCTG
CGTGCTTGGCCTACCACTACCACTACCACGTGAGATTGTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97946:328..567+

>mRNA_Ecto-sp8_S_contig97946.31570.1 ID=mRNA_Ecto-sp8_S_contig97946.31570.1|Name=mRNA_Ecto-sp8_S_contig97946.31570.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97946:328..567+ (Ectocarpus species8 EcLAC_412)
AGGTACAATGACAAGCGGACCCCGTCATGGACCGACCGCATCTTGTGGCG
AGGCTTTGAAGACGACGAGCGCCTTGACGCCCATCCCCAACAAGAAGGCT
CTCCTAGAGGACAAGCTGTTTCTGGCGCTGGTCGTGCTGTCAATAGCACC
TTCGCTGCGGTACAGGAAGTGATCGCGTCGGACCATGAGCCTGTCTTCTG
CGTGCTTGGCCTACCACTACCACTACCACGTGAGATTGTC
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