mRNA_Ecto-sp8_S_contig97934.31566.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97934.31566.1
Unique NamemRNA_Ecto-sp8_S_contig97934.31566.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Match: A0A6H5JHE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE2_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 9.410e-73
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 1 
Query:    1 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR 372
            NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYG RSSLVESVLVAAQQAKRGSFRVIIVDSRP VEGRQLSETLSAEGIPCTYVLLTAISYIMR
Sbjct:  121 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYG-RSSLVESVLVAAQQAKRGSFRVIIVDSRPEVEGRQLSETLSAEGIPCTYVLLTAISYIMR 243
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BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Match: D7FKQ7_ECTSI (Eukaryotic translation initiation factor 2B delta subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ7_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 7.050e-70
Identity = 120/124 (96.77%), Postives = 120/124 (96.77%), Query Frame = 1 
Query:    1 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR 372
            N  KALRNIIAKSPPSLPEEEAKASIVDKI EFINTRITLAANEIAKNAITKIRDGDVILTYG RSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR
Sbjct:   92 NAHKALRNIIAKSPPSLPEEEAKASIVDKIKEFINTRITLAANEIAKNAITKIRDGDVILTYG-RSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR 214
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BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Match: K3WT83_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WT83_GLOUD)

HSP 1 Score: 120 bits (302), Expect = 1.560e-29
Identity = 59/124 (47.58%), Postives = 94/124 (75.81%), Query Frame = 1 
Query:    1 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR 372
            N  ++LR+II+ + P L ++EAK  I+ +I+E+I +RI LA   ++K+A +KI +GDVILTY +RS++VE +L  A + ++ +FRVI+VDSRP  EG++L ++L+  G+PCTY+ + A+SYIMR
Sbjct:  275 NAIRSLRSIISTTSPELSDDEAKKHIIGEIDEYIQSRIILAMRAVSKHAQSKISEGDVILTY-ARSNVVEMILKEAHELRKINFRVIVVDSRPHYEGKKLVKSLADTGLPCTYIHINALSYIMR 397
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BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Match: UPI001CB8E91F (translation initiation factor eIF-2B subunit delta-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8E91F)

HSP 1 Score: 120 bits (300), Expect = 4.370e-29
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:    1 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR 372
            N  K ++ +IA  P +L E EAKA++  +IN FIN +I LA   I ++A+TK+RDGDV+LTYGS SS VE +L+ A + K+  FRV+IVDSRP +EGR L   L  +GI CTYV + A+SYIM 
Sbjct:  375 NAIKFVKTLIANLPLTLSESEAKANLSSEINHFINEKIILADKVIVQHAVTKVRDGDVLLTYGS-SSAVEMILLHAYELKK-RFRVVIVDSRPKLEGRLLLRRLVGKGISCTYVHINAVSYIMH 496
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BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Match: A0A446UKY3_TRITD (Uncharacterized protein n=3 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446UKY3_TRITD)

HSP 1 Score: 114 bits (285), Expect = 5.580e-29
Identity = 65/124 (52.42%), Postives = 84/124 (67.74%), Query Frame = 1 
Query:    1 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR 372
            N  + L+N IAK P +L E EAKAS+   I+ FIN +I +A   I  +AITK+RD DV+LTYGS SS+VE +L  A +  R  FRVI+VDSRP +EG+ L   L A+GI CTY  + A+SYIM 
Sbjct:   47 NAIRFLKNRIAKLPITLSESEAKASLQSDIDRFINEKIVVADQVIVSHAITKVRDDDVLLTYGS-SSVVEMILEHAHELGR-KFRVIVVDSRPKLEGQGLLRRLVAKGINCTYTHINAVSYIMH 168
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BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Match: A0A426XSG4_ENSVE (Uncharacterized protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426XSG4_ENSVE)

HSP 1 Score: 114 bits (285), Expect = 9.640e-29
Identity = 63/123 (51.22%), Postives = 86/123 (69.92%), Query Frame = 1 
Query:    1 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIM 369
            N  K L+N IAK P ++ E EAK+S+   I+ FI+ +I +A   I ++A+TKIRDGDV+LTYG  SS+VE +LV A +  +  FRV+IVDSRP +EG+ L   L A+G+ CTY  + AISYIM
Sbjct:   47 NAIKFLKNRIAKLPDAMSESEAKSSLQSDIDRFISEKIVIADKVIIRHAVTKIRDGDVLLTYGL-SSVVEMILVYAHEVGK-QFRVVIVDSRPKLEGQVLLHRLVAKGLNCTYTHINAISYIM 167
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BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Match: A0A438JC15_VITVI (Translation initiation factor eIF-2B subunit delta n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JC15_VITVI)

HSP 1 Score: 117 bits (293), Expect = 1.380e-28
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 1 
Query:    1 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR 372
            N  + L++ IAK P SL E EAKAS+   IN FIN +I LA   I ++A+TKIRDGDV+LTYGS SS VE +L+ A +  +  FRV++VDSRP +EG+ L   L  +G+ CTY  + A+SYIM 
Sbjct:  190 NAIRFLKSRIAKLPLSLSESEAKASLQSDINRFINEKIVLADKVIVRHAVTKIRDGDVLLTYGS-SSAVEMILLYAHELGK-QFRVVVVDSRPKLEGQLLLRRLVGQGLSCTYTHINAVSYIMH 311
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BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Match: A0A2U1MLE2_ARTAN (NagB/RpiA/CoA transferase-like superfamily protein n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MLE2_ARTAN)

HSP 1 Score: 118 bits (295), Expect = 1.940e-28
Identity = 63/124 (50.81%), Postives = 86/124 (69.35%), Query Frame = 1 
Query:    1 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR 372
            N  K ++  IA  P +L E EAKA+++ +IN FIN +I LA   I ++A+TK+RDGDV+LTYGS SS VE +L+ A +  +  FRV+IVDSRP +EGR L   L  +GI CTYV + A+SY+M 
Sbjct:  346 NAIKFVKTRIANLPLTLSESEAKANLLSEINHFINEKIILADKVIVRHAVTKVRDGDVLLTYGS-SSAVEMILLHAHELNK-QFRVVIVDSRPKLEGRLLLRRLVGKGISCTYVNINAVSYVMH 467
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BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Match: UPI0019000CC2 (translation initiation factor eIF-2B subunit delta-like isoform X3 n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019000CC2)

HSP 1 Score: 115 bits (287), Expect = 2.090e-28
Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 1 
Query:    1 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR 372
            N  + L+N IAK P +LPE E KA++   IN FIN +I +A   I ++A TKIRDGDV+LTYGS S++   VL A +  K   FRV++VDSRP  EG+ L   L A G+ CTY  + AISY+M 
Sbjct:   83 NAIRFLKNRIAKLPLNLPESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSSAVEMLVLYAHELGKE--FRVVVVDSRPKQEGQALLRRLIARGLNCTYTHINAISYVMH 204
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BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Match: A0A6L2LRF5_TANCI (Translation initiation factor eIF-2B subunit delta-like isoform X3 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LRF5_TANCI)

HSP 1 Score: 118 bits (295), Expect = 2.580e-28
Identity = 63/124 (50.81%), Postives = 86/124 (69.35%), Query Frame = 1 
Query:    1 NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAITKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQLSETLSAEGIPCTYVLLTAISYIMR 372
            N  K ++  IA  P +L E EAKA+++ +IN FIN +I LA   I ++A+TK+RDGDV+LTYGS SS VE +L+ A +  +  FRV+IVDSRP +EGR L   L  +GI CTYV + A+SY+M 
Sbjct:  834 NAIKFVKTRIANLPLTLSESEAKANLLSEINHFINEKIILADKVIVRHAVTKVRDGDVLLTYGS-SSAVEMILLHAHELNK-QFRVVIVDSRPKLEGRLLLRRLVGKGISCTYVNINAVSYVMH 955
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97934.31566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHE2_9PHAE9.410e-7398.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKQ7_ECTSI7.050e-7096.77Eukaryotic translation initiation factor 2B delta ... [more]
K3WT83_GLOUD1.560e-2947.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI001CB8E91F4.370e-2952.42translation initiation factor eIF-2B subunit delta... [more]
A0A446UKY3_TRITD5.580e-2952.42Uncharacterized protein n=3 Tax=Triticum turgidum ... [more]
A0A426XSG4_ENSVE9.640e-2951.22Uncharacterized protein n=2 Tax=Ensete ventricosum... [more]
A0A438JC15_VITVI1.380e-2851.61Translation initiation factor eIF-2B subunit delta... [more]
A0A2U1MLE2_ARTAN1.940e-2850.81NagB/RpiA/CoA transferase-like superfamily protein... [more]
UPI0019000CC22.090e-2850.00translation initiation factor eIF-2B subunit delta... [more]
A0A6L2LRF5_TANCI2.580e-2850.81Translation initiation factor eIF-2B subunit delta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97934contigEcto-sp8_S_contig97934:2..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score221.1
Seed ortholog evalue3e-55
Seed eggNOG ortholog2880.D7FKQ7
Model size381
KEGG koko:K03680
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001541,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005851,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007548,GO:0008135,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009987,GO:0010001,GO:0010467,GO:0014003,GO:0019538,GO:0021782,GO:0022008,GO:0022414,GO:0023052,GO:0030154,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034645,GO:0042063,GO:0042552,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048608,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1184@1,KOG1467@2759
Cds size381
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145345.8170412-CDS-Ecto-sp8_S_contig97934:1..1921681145345.8170412-CDS-Ecto-sp8_S_contig97934:1..192Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97934 2..192 +
1681145345.8319457-CDS-Ecto-sp8_S_contig97934:356..5461681145345.8319457-CDS-Ecto-sp8_S_contig97934:356..546Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97934 357..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97934.31566.1prot_Ecto-sp8_S_contig97934.31566.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97934 2..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97934.31566.1

>prot_Ecto-sp8_S_contig97934.31566.1 ID=prot_Ecto-sp8_S_contig97934.31566.1|Name=mRNA_Ecto-sp8_S_contig97934.31566.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=127bp
NLCKALRNIIAKSPPSLPEEEAKASIVDKINEFINTRITLAANEIAKNAI
TKIRDGDVILTYGSRSSLVESVLVAAQQAKRGSFRVIIVDSRPGVEGRQL
SETLSAEGIPCTYVLLTAISYIMRVST
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mRNA from alignment at Ecto-sp8_S_contig97934:2..546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97934.31566.1 ID=mRNA_Ecto-sp8_S_contig97934.31566.1|Name=mRNA_Ecto-sp8_S_contig97934.31566.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=545bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97934:2..546+ (Ectocarpus species8 EcLAC_412)
AACTTGTGCAAGGCGTTGAGGAATATCATCGCCAAGTCGCCCCCTTCTCT
GCCGGAGGAAGAGGCCAAAGCGAGCATCGTCGACAAGATCAACGAGTTCA
TCAACACGCGGATTACCCTGGCGGCGAACGAGATCGCTAAGAACGCCATC
ACCAAGATCAGGGATGGTGACGTCATCCTGACATACGGAAGGTGTGTTGT
TAGCTTGTTAGGCACAGCGTTTGGCTTCTTGCCGCAGAATAAAGGTGAAG
ATGGTAGCACGTTGGTGAAACGGAATGCAGCCTCAGCAGAGATTTCAGTT
GCGGCATTTTTCACCACCATTGTGTTCGTCATCTCCCTTCTTTGGTGTTG
CGGAGCAGGTCTTCATTGGTCGAAAGCGTGTTGGTGGCTGCGCAGCAGGC
CAAACGAGGGTCTTTCAGGGTGATCATCGTGGACTCGCGCCCTGGAGTGG
AAGGTCGCCAGCTTTCCGAAACACTCTCTGCGGAGGGCATTCCTTGCACA
TACGTCCTTCTCACTGCAATATCTTACATCATGAGGGTAAGCACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97934:2..546+

>mRNA_Ecto-sp8_S_contig97934.31566.1 ID=mRNA_Ecto-sp8_S_contig97934.31566.1|Name=mRNA_Ecto-sp8_S_contig97934.31566.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97934:2..546+ (Ectocarpus species8 EcLAC_412)
AACTTGTGCAAGGCGTTGAGGAATATCATCGCCAAGTCGCCCCCTTCTCT
GCCGGAGGAAGAGGCCAAAGCGAGCATCGTCGACAAGATCAACGAGTTCA
TCAACACGCGGATTACCCTGGCGGCGAACGAGATCGCTAAGAACGCCATC
ACCAAGATCAGGGATGGTGACGTCATCCTGACATACGGAAGCAGGTCTTC
ATTGGTCGAAAGCGTGTTGGTGGCTGCGCAGCAGGCCAAACGAGGGTCTT
TCAGGGTGATCATCGTGGACTCGCGCCCTGGAGTGGAAGGTCGCCAGCTT
TCCGAAACACTCTCTGCGGAGGGCATTCCTTGCACATACGTCCTTCTCAC
TGCAATATCTTACATCATGAGGGTAAGCACG
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