mRNA_Ecto-sp8_S_contig9793.31565.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9793.31565.1
Unique NamemRNA_Ecto-sp8_S_contig9793.31565.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9793.31565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9793contigEcto-sp8_S_contig9793:1865..6059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2486
Hectar predicted targeting categoryother localisation
Exons7
Cds size1839
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9793.31565.1prot_Ecto-sp8_S_contig9793.31565.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9793 2490..6037 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145345.689521-UTR-Ecto-sp8_S_contig9793:1864..24891681145345.689521-UTR-Ecto-sp8_S_contig9793:1864..2489Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9793 1865..2489 -
1681145345.7887409-UTR-Ecto-sp8_S_contig9793:6037..60591681145345.7887409-UTR-Ecto-sp8_S_contig9793:6037..6059Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9793 6038..6059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145345.7111094-CDS-Ecto-sp8_S_contig9793:2489..27801681145345.7111094-CDS-Ecto-sp8_S_contig9793:2489..2780Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9793 2490..2780 -
1681145345.7247245-CDS-Ecto-sp8_S_contig9793:3054..33191681145345.7247245-CDS-Ecto-sp8_S_contig9793:3054..3319Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9793 3055..3319 -
1681145345.7356572-CDS-Ecto-sp8_S_contig9793:3711..38261681145345.7356572-CDS-Ecto-sp8_S_contig9793:3711..3826Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9793 3712..3826 -
1681145345.7462485-CDS-Ecto-sp8_S_contig9793:4103..46831681145345.7462485-CDS-Ecto-sp8_S_contig9793:4103..4683Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9793 4104..4683 -
1681145345.756676-CDS-Ecto-sp8_S_contig9793:4926..50641681145345.756676-CDS-Ecto-sp8_S_contig9793:4926..5064Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9793 4927..5064 -
1681145345.7671893-CDS-Ecto-sp8_S_contig9793:5346..55111681145345.7671893-CDS-Ecto-sp8_S_contig9793:5346..5511Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9793 5347..5511 -
1681145345.7779756-CDS-Ecto-sp8_S_contig9793:5752..60371681145345.7779756-CDS-Ecto-sp8_S_contig9793:5752..6037Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9793 5753..6037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9793.31565.1

>prot_Ecto-sp8_S_contig9793.31565.1 ID=prot_Ecto-sp8_S_contig9793.31565.1|Name=mRNA_Ecto-sp8_S_contig9793.31565.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=613bp
MCPFQTLRLGVSRSFCQRRGVAICSFRFRCRLMVFESVSLCAVLFLHGAS
CQAHIANQDHPRPATMSSRTSADSFDDDGGPDAEESSSPWQQSGTGIRRR
RRNWLKLFDEGAVDDIGNSSADDDDGNESSFSGDFLDNRSESQLTVYSDQ
GSSSTRTTLSSASNDSILRSSPPSALATSCDSSVAGTCSDSNVHQQGASA
SSSGRSSSSVHTVIVGSTSRARPIATSGAAGGVLPPPAPSSSSSSRATQP
QRAAEQTNRRTRGTEVMDVEYLRCRNGTINHAIFNDDAGIRYKISCTVTN
KTGFTDIAPDIFPKCCDFLHLASNTGAFGLERGGTRRSLHAQGWFEVGVV
FAGDPAKIVVKIREAFRKLLAIVGCKISCKVFDRTQTPDLMTGYVQKDEG
RSWYQFDSVGLTQDFCRVALANYRRKAAGVLKDNAKIQINKKSFWPVMIN
LSQKEYFPLKMSGAQLALYAIQSGEYGPCYSWISSTSSQGIPVEKAVSFW
RCWTAHAEVQKQDIYHVFFDTRPTCGCQEWDLADAAYDDMTSSQAQSFAS
RQRDLLSALTDTERVNLSRQADSLPVGNLHDAVREGLILRNVGRNPDSSD
EEGSVADSDDPL*
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mRNA from alignment at Ecto-sp8_S_contig9793:1865..6059-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9793.31565.1 ID=mRNA_Ecto-sp8_S_contig9793.31565.1|Name=mRNA_Ecto-sp8_S_contig9793.31565.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4195bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9793:1865..6059- (Ectocarpus species8 EcLAC_412)
CAGGTTTTTCGTGTGCTCTCGCATGTGTCCATTTCAGACTCTCCGTTTAG
GTGTCTCCCGCTCCTTCTGCCAGAGGCGTGGGGTAGCAATCTGTTCGTTT
CGCTTCCGTTGTCGTCTGATGGTCTTTGAGTCTGTATCCCTTTGCGCTGT
ACTATTTTTGCACGGTGCATCATGTCAAGCACATATTGCGAATCAGGATC
ACCCCCGTCCAGCAACCATGTCTTCCCGGACTTCTGCCGACAGCTTCGAC
GACGACGGGGGCCCCGACGCCGAGGAGTCGTCAAGCCCCTGGCAACAATC
TGGGACGGTACGTCCCTGCCATATGATTATATCCCTCTCATGTCGTCTCT
TCCTTATCTAATACACACCCGTTCGGTCATATTCGTCCTTCATAGCTTAA
TAATCCTGCAAACTATACTCAATTTCATATCCTTGTCATCATTTGTGATG
CAACACGTTTATGTCTGTCACTACTATATTTTTGTTTTCTCTTTCTCTTG
CTTCATTAATTTTCTACCGTCCCTCGTTTATTTCTTTGTTTATGCCAGGG
TATTCGGCGTAGGCGTCGTAATTGGCTTAAGCTTTTCGATGAAGGTGCTG
TGGACGACATTGGAAACTCCAGTGCTGACGATGATGACGGCAACGAGTCC
TCTTTCAGCGGCGACTTTCTTGACAACCGTTCAGAAAGTCAACTGACCGT
ATATTCCGACCAGGTCAGTATTGCTGTTCTCGCTTGACCGTCTTGTTGAT
TATTAATTGTGTTTGTCTTAGTGCTTGACTCTTTTAGATCATCTTCACAT
TATGCCAGGCTAGCGTGCGTAGGTGTGGTAATGCAGCGTAGCAGGGACTT
CGCTGACAACCGATCCGAATGTCAATTGACTGTGTATGCAATCGGGTTCA
CACTACTGTTCTTGTTTGATCGTGTTGGCGATTATTTCTTTCATGTTATT
TACATCTACATCCTTGCTGTTTCCATTTGATTCGTAATCCATCAGGGTTC
ATCCTCTACTCGCACCACTCTCTCGAGCGCGTCCAACGACAGTATCCTCC
GGTCAAGTCCTCCTTCCGCTCTCGCTACCTCTTGCGATTCTTCTGTCGCT
GGTACTTGTAGCGACTCTAACGTTCACCAACAGGTATACTCTCGTTTGTC
ATTGCCTGGTTTAATCCTTGTATCTGCGCGTTCCCAATTAAAGTTTTTTT
CAGTTTTATGCGTCTCGTCCTGTCGATTTTACTACGTCCTTTTGATTTTC
ATGTACCTCCATGCCGTTTTATTGATATCAACTTTGTCCTTGTTTCCCTC
TATTACCGTAACGACATCTCCATTTCCTCACTCTCCCCTCCATTTCACTT
GTTCGCATTTCGTGTTCCGCCTGCAGGGTGCCTCAGCTTCCAGTTCCGGT
CGTTCATCGTCATCGGTGCACACCGTTATCGTTGGGTCCACTAGCCGAGC
ACGACCTATAGCAACGAGTGGTGCAGCTGGCGGGGTATTGCCGCCTCCTG
CGCCTTCCTCTTCGTCGTCGTCTCGAGCTACTCAACCTCAGCGTGCCGCA
GAACAGACTAATCGTCGTACCCGCGGGACGGAGGTGATGGATGTCGAGTA
CTTGCGTTGTCGCAACGGGACCATCAACCACGCTATCTTCAACGATGACG
CCGGGATACGATACAAAATAAGTTGTACCGTCACAAACAAAACCGGATTC
ACCGACATCGCTCCAGACATCTTTCCTAAATGCTGCGATTTCTTGCATTT
AGCTTCCAACACCGGCGCGTTCGGGCTTGAGCGCGGTGGTACGCGTCGTT
CCTTACACGCTCAGGGATGGTTCGAGGTAGGCGTGGTCTTTGCTGGAGAT
CCTGCGAAGATCGTCGTGAAGATTCGCGAGGCCTTTCGAAAATTGCTCGC
TATCGTTGGTTGCAAGATCTCCTGCAAGGTCTTCGACCGGACACAAACCC
CTGATCGTGAGTGTTGTCGGTCATACTTCCCCTTCTTCATCGCCTTGCTT
TTTATATTTGCGTTGTTCATTCGTTCAACATTGTCCGTGCGTTTGATGCT
ACCTACTATACCTTTCTCAAATGCTATGTTCTTTATTTTTTGCCGTGCTC
TTTTCCTTCACGTCGCACTTAATACATGAATGTAGTGCCATTTTCCTCCA
CCCTTATGCCAGTATGTTCTGTTGTTATTGACTAACTGCTGGTGTGCATG
TATCGTTCCTTCATCTTCTCTTGCGTCTTGCAGTCATGACTGGATATGTC
CAGAAAGATGAGGGTCGTTCTTGGTATCAGTTCGACAGTGTCGGGCTCAC
ACAAGATTTCTGCAGGGTGGCTCTTGCGAACTACCGCCGGAAAGCAGCGT
GAGTAGTAACCTTCATTTCTTTTCATATCATCATGTTTCCCGTTCATATT
GTATTTTCGTTTATCCCGTCCTATTTCTACAACCTCCTCTTGTCTCGTTT
ATTGTTTTCGTAAAGCTTGTCGTTATATCGCCGGTTATCATTTCCGGTTT
AAATGTCTTCGTGTTATTCGTTACCGCCCACGTTCTTCTGTCGTCCTAAA
AACTGGTATCTCAATTTTTTCCCGTTCACATTGTATTTTCGTTGCATCTG
GACCTGTTTCAATCACTTCACCGTCGTCCCGTTCGTGATTGTGCTTGCCC
TACCATCCTCTACTGCTTCGTCACCTTATCTTTATATCGATGTTAAACTT
CACGGCCCCATATCTCCCTTTTCCCTTTATCATTTTCCAGGGGGGTCCTG
AAAGACAACGCCAAGATCCAGATCAACAAGAAATCCTTCTGGCCTGTCAT
GATCAACCTCTCCCAGAAGGAGTACTTCCCTCTGAAGATGTCTGGTGCTC
AACTCGCACTGTACGCGATCCAGTCCGGCGAGTACGGGCCGTGCTACTCC
TGGATTTCGTCCACCAGCTCCCAGGGCATTCCTGTGGAGAAGGCCGTCTC
CTTCTGGCGGTGCTGGACAGCTCACGCCGAAGTGCAGAAACAAGACATCT
ACCATGTAAGCAATCTTTCGTATGCTTGCTATTTTTTCCCTTCCCAATTG
ATTATTTTGTTTACTGTGTCTGGTCGTATTTATACTGTAGTACGTACCTG
CTCTTACCTATCGTGTATTTCAACGTCTGCATCAAGTGCTTTGATCTTTA
GTGCCTGCTCTTCTCTATCGTGTATATCGTATTTTTTCGTTGAAAACGTC
ACCATCCGTTCTCTCTAATTTTTCCTCGCCTTTTGTCCACGTCATACGTC
TTATCCTGGTTTCGTGACGCCCGTGCCAGGTCTTCTTCGACACACGCCCT
ACCTGTGGGTGTCAAGAGTGGGACTTGGCCGACGCGGCCTACGACGACAT
GACCTCTTCCCAGGCACAGTCGTTCGCCTCCCGACAGCGCGACCTTCTGT
CTGCTCTCACCGACACCGAACGTGTCAACCTTTCGCGTCAAGCGGATAGC
TTGCCGGTCGGAAACCTTCACGACGCCGTTCGCGAAGGCCTTATTCTTCG
GAACGTCGGTCGCAATCCCGACAGTAGCGACGAGGAAGGCTCCGTCGCCG
ACAGCGACGATCCTCTGTAGTTTATTCCTATAGCTGTATGCCTTGTCCGT
GTATTTCGTTCTGTCTGCTGTGTGGTGAATTTATTTTTCCTTGTTCATGC
CGTGTGGTTGATTTATTGTAGTACTTCCTGTTTGGACGATTCTAAATATA
TCGTCCTGCTACCTCTATGTTCTTGCATCTGTAGAGTATTTCGGCACCTG
CTTCTAGTACCGTTTTCGCTAAGTTTTAAGATCATATTTATGTACACTAC
CGGTTTTTGCTTTTCTTTTCCGTCGATCGTTGTAGCCTATCTTTCTAAGT
TCGTCTTGTCGGCAGTCGAATTTTGTACTTTACGAAGTGGTGTTACCTGT
GTGCGTTTTTTTCCTGCGTTATGAGTAGACAGTTTACGACTGCTGTTTGC
TGACTTTCTTTTGTAACAGAGTAATGTAGAGTTAACGTAGCGTTTCCTTA
GTTAGGGAGTGAGTGTTCATGTATCTGCATGATTTTTCTCTGCAATTACT
GCTAATCATAGCCAAGTCCTAGGTCCATGAAGACGTAGGTTCTGTATATA
CAAGCTAAAATTGCCGAAAATCCGACGCGGTTTTTGTACGGAGGAATTTT
CCGGGCGAAATCTTGCAGAAAAACAAAATCGGCGGAATTTCCCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9793:1865..6059-

>mRNA_Ecto-sp8_S_contig9793.31565.1 ID=mRNA_Ecto-sp8_S_contig9793.31565.1|Name=mRNA_Ecto-sp8_S_contig9793.31565.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1839bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9793:1865..6059- (Ectocarpus species8 EcLAC_412)
ATGTGTCCATTTCAGACTCTCCGTTTAGGTGTCTCCCGCTCCTTCTGCCA
GAGGCGTGGGGTAGCAATCTGTTCGTTTCGCTTCCGTTGTCGTCTGATGG
TCTTTGAGTCTGTATCCCTTTGCGCTGTACTATTTTTGCACGGTGCATCA
TGTCAAGCACATATTGCGAATCAGGATCACCCCCGTCCAGCAACCATGTC
TTCCCGGACTTCTGCCGACAGCTTCGACGACGACGGGGGCCCCGACGCCG
AGGAGTCGTCAAGCCCCTGGCAACAATCTGGGACGGGTATTCGGCGTAGG
CGTCGTAATTGGCTTAAGCTTTTCGATGAAGGTGCTGTGGACGACATTGG
AAACTCCAGTGCTGACGATGATGACGGCAACGAGTCCTCTTTCAGCGGCG
ACTTTCTTGACAACCGTTCAGAAAGTCAACTGACCGTATATTCCGACCAG
GGTTCATCCTCTACTCGCACCACTCTCTCGAGCGCGTCCAACGACAGTAT
CCTCCGGTCAAGTCCTCCTTCCGCTCTCGCTACCTCTTGCGATTCTTCTG
TCGCTGGTACTTGTAGCGACTCTAACGTTCACCAACAGGGTGCCTCAGCT
TCCAGTTCCGGTCGTTCATCGTCATCGGTGCACACCGTTATCGTTGGGTC
CACTAGCCGAGCACGACCTATAGCAACGAGTGGTGCAGCTGGCGGGGTAT
TGCCGCCTCCTGCGCCTTCCTCTTCGTCGTCGTCTCGAGCTACTCAACCT
CAGCGTGCCGCAGAACAGACTAATCGTCGTACCCGCGGGACGGAGGTGAT
GGATGTCGAGTACTTGCGTTGTCGCAACGGGACCATCAACCACGCTATCT
TCAACGATGACGCCGGGATACGATACAAAATAAGTTGTACCGTCACAAAC
AAAACCGGATTCACCGACATCGCTCCAGACATCTTTCCTAAATGCTGCGA
TTTCTTGCATTTAGCTTCCAACACCGGCGCGTTCGGGCTTGAGCGCGGTG
GTACGCGTCGTTCCTTACACGCTCAGGGATGGTTCGAGGTAGGCGTGGTC
TTTGCTGGAGATCCTGCGAAGATCGTCGTGAAGATTCGCGAGGCCTTTCG
AAAATTGCTCGCTATCGTTGGTTGCAAGATCTCCTGCAAGGTCTTCGACC
GGACACAAACCCCTGATCTCATGACTGGATATGTCCAGAAAGATGAGGGT
CGTTCTTGGTATCAGTTCGACAGTGTCGGGCTCACACAAGATTTCTGCAG
GGTGGCTCTTGCGAACTACCGCCGGAAAGCAGCGGGGGTCCTGAAAGACA
ACGCCAAGATCCAGATCAACAAGAAATCCTTCTGGCCTGTCATGATCAAC
CTCTCCCAGAAGGAGTACTTCCCTCTGAAGATGTCTGGTGCTCAACTCGC
ACTGTACGCGATCCAGTCCGGCGAGTACGGGCCGTGCTACTCCTGGATTT
CGTCCACCAGCTCCCAGGGCATTCCTGTGGAGAAGGCCGTCTCCTTCTGG
CGGTGCTGGACAGCTCACGCCGAAGTGCAGAAACAAGACATCTACCATGT
CTTCTTCGACACACGCCCTACCTGTGGGTGTCAAGAGTGGGACTTGGCCG
ACGCGGCCTACGACGACATGACCTCTTCCCAGGCACAGTCGTTCGCCTCC
CGACAGCGCGACCTTCTGTCTGCTCTCACCGACACCGAACGTGTCAACCT
TTCGCGTCAAGCGGATAGCTTGCCGGTCGGAAACCTTCACGACGCCGTTC
GCGAAGGCCTTATTCTTCGGAACGTCGGTCGCAATCCCGACAGTAGCGAC
GAGGAAGGCTCCGTCGCCGACAGCGACGATCCTCTGTAG
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