mRNA_Ecto-sp8_S_contig97889.31560.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97889.31560.1
Unique NamemRNA_Ecto-sp8_S_contig97889.31560.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97889.31560.1 vs. uniprot
Match: D7FIQ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIQ4_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 8.490e-100
Identity = 150/155 (96.77%), Postives = 151/155 (97.42%), Query Frame = 1 
Query:    1 LLEEGILPTLRDAKARLLSPGFVSIPSNAEVWAFCCQSSELDSMSRLLPSAGTSSSESFRAPSSEEWERCPGAAGPISMHENRMVQFHPLSPSVRIFEFDLMSRDNPLPGPEGRRCEVQFPIDTISGGDGEVHAIVCWWQCFMDEDRTIVMSTSP 465
            LLEEGILPTLRDAKARLLSPGFVSIPSNAEVWAFCCQSSEL SMSRLLPSAGTSS ESFRAPSSEEWERCPGAAGP+SMHEN MVQFHPLSPSVRIFEFDLMS DNPLPGPEGRRCEVQFPIDTISGGDGEVHAIVCWWQCFMDEDRTIVMSTSP
Sbjct:  115 LLEEGILPTLRDAKARLLSPGFVSIPSNAEVWAFCCQSSELHSMSRLLPSAGTSSGESFRAPSSEEWERCPGAAGPVSMHENGMVQFHPLSPSVRIFEFDLMSCDNPLPGPEGRRCEVQFPIDTISGGDGEVHAIVCWWQCFMDEDRTIVMSTSP 269
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BLAST of mRNA_Ecto-sp8_S_contig97889.31560.1 vs. uniprot
Match: A0A835YNS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.280e-22
Identity = 60/155 (38.71%), Postives = 82/155 (52.90%), Query Frame = 1 
Query:    1 LLEEGILPTLRDAKARLLSPGFVSIPSNAEVWAFCCQSSELDSMSRLLPSAGTSSSESFRAPSSEEWERCPGAAGPISMHENRMVQFHPLSPSVRIFEFDLMSRDNPLPGPEGRRCEVQFPIDTISGGDGEVHAIVCWWQCFMDEDRTIVMSTSP 465
            LL EG+L ++R AKA L++PGFV+IP +A+V+A  C+  +  SM+R            F      +W+RC G +   S+H     +   LS    IF FD       LP   GR C + F  +T     G VHA+V WWQC MD + TI MST+P
Sbjct:   24 LLGEGLLQSMRHAKASLMAPGFVTIPHSAQVFAALCECDDFASMARPQQFG------QFGLSVPRQWQRCAGLSSSESLHVTWSDKCKKLSTEQPIFSFDFAD----LPEAGGRSCGITFTAETA----GVVHAVVYWWQCSMDTEGTITMSTAP 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97889.31560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIQ4_ECTSI8.490e-10096.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNS4_9STRA1.280e-2238.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97889contigEcto-sp8_S_contig97889:5..469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score314.3
Seed ortholog evalue3.2e-83
Seed eggNOG ortholog2880.D7FIQ4
Model size465
KEGG rclassRC00003,RC02120
KEGG koko:K11438
KEGG ReactionR11216
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.peptidyl-arginine methylation, to symmetrical-dimethyl arginine
EggNOG OGsCOG0500@1,KOG1501@2759
EC2.1.1.321
Cds size465
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145345.2686539-CDS-Ecto-sp8_S_contig97889:4..4691681145345.2686539-CDS-Ecto-sp8_S_contig97889:4..469Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97889 5..469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97889.31560.1prot_Ecto-sp8_S_contig97889.31560.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97889 5..469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97889.31560.1

>prot_Ecto-sp8_S_contig97889.31560.1 ID=prot_Ecto-sp8_S_contig97889.31560.1|Name=mRNA_Ecto-sp8_S_contig97889.31560.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=155bp
LLEEGILPTLRDAKARLLSPGFVSIPSNAEVWAFCCQSSELDSMSRLLPS
AGTSSSESFRAPSSEEWERCPGAAGPISMHENRMVQFHPLSPSVRIFEFD
LMSRDNPLPGPEGRRCEVQFPIDTISGGDGEVHAIVCWWQCFMDEDRTIV
MSTSP
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mRNA from alignment at Ecto-sp8_S_contig97889:5..469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97889.31560.1 ID=mRNA_Ecto-sp8_S_contig97889.31560.1|Name=mRNA_Ecto-sp8_S_contig97889.31560.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=465bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97889:5..469+ (Ectocarpus species8 EcLAC_412)
CTGTTAGAAGAAGGGATCCTCCCGACCTTGCGGGACGCCAAGGCCCGTCT
TCTCTCGCCCGGGTTTGTTTCGATCCCATCGAATGCGGAGGTGTGGGCTT
TCTGCTGCCAGAGCTCGGAGTTGGACAGCATGAGCCGCCTTTTGCCTTCG
GCTGGGACCAGCAGCAGCGAGAGCTTCCGAGCGCCGTCCTCCGAAGAGTG
GGAACGATGTCCTGGGGCGGCCGGTCCGATATCTATGCACGAGAATAGGA
TGGTCCAGTTCCACCCTCTCTCCCCTTCTGTGAGGATTTTCGAGTTCGAT
CTCATGTCACGTGATAACCCTCTGCCTGGGCCGGAGGGCCGCAGGTGCGA
AGTACAATTTCCGATCGATACCATCTCGGGTGGTGACGGCGAGGTCCACG
CAATCGTGTGCTGGTGGCAGTGCTTCATGGATGAAGACCGGACGATTGTA
ATGAGCACGTCCCCA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97889:5..469+

>mRNA_Ecto-sp8_S_contig97889.31560.1 ID=mRNA_Ecto-sp8_S_contig97889.31560.1|Name=mRNA_Ecto-sp8_S_contig97889.31560.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97889:5..469+ (Ectocarpus species8 EcLAC_412)
CTGTTAGAAGAAGGGATCCTCCCGACCTTGCGGGACGCCAAGGCCCGTCT
TCTCTCGCCCGGGTTTGTTTCGATCCCATCGAATGCGGAGGTGTGGGCTT
TCTGCTGCCAGAGCTCGGAGTTGGACAGCATGAGCCGCCTTTTGCCTTCG
GCTGGGACCAGCAGCAGCGAGAGCTTCCGAGCGCCGTCCTCCGAAGAGTG
GGAACGATGTCCTGGGGCGGCCGGTCCGATATCTATGCACGAGAATAGGA
TGGTCCAGTTCCACCCTCTCTCCCCTTCTGTGAGGATTTTCGAGTTCGAT
CTCATGTCACGTGATAACCCTCTGCCTGGGCCGGAGGGCCGCAGGTGCGA
AGTACAATTTCCGATCGATACCATCTCGGGTGGTGACGGCGAGGTCCACG
CAATCGTGTGCTGGTGGCAGTGCTTCATGGATGAAGACCGGACGATTGTA
ATGAGCACGTCCCCA
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