mRNA_Ecto-sp8_S_contig97888.31559.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97888.31559.1
Unique NamemRNA_Ecto-sp8_S_contig97888.31559.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Match: D7FPR0_ECTSI (Sulfatase-modifying factor 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPR0_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 6.380e-43
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1
Query:   16 YMLDAQTIKEADEGIGRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVAQVSWVDADAYCSWAGRR 219
            YMLDA+TIKEADEGIGRVKGSEHWVGVEGANWRQPEGPRSSLK+RGNVPVAQVSWVDADAYCSWAGRR
Sbjct:   66 YMLDAETIKEADEGIGRVKGSEHWVGVEGANWRQPEGPRSSLKSRGNVPVAQVSWVDADAYCSWAGRR 133          
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Match: A0A8J5XF83_DIALT (FGE-sulfatase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XF83_DIALT)

HSP 1 Score: 90.1 bits (222), Expect = 1.400e-19
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   19 MLDAQTIK--EADEGIGRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVAQVSWVDADAYCSWAGRR 219
             LDA+T+   +AD G+GR++ + HWVGV GA WRQPEGPRSS++ R + PV   S+ DA A+C+WAGRR
Sbjct:  125 FLDAETLARADADGGLGRLRDAPHWVGVAGAYWRQPEGPRSSIRGREDHPVVHASYNDALAFCTWAGRR 193          
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Match: A0A7S2WSR2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSR2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.610e-18
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   16 YMLDAQTIKEAD--EGIGRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVAQVSWVDADAYCSWAGRR 219
            Y+    T+   D   G GRVK + HW+ V+GA WR+PEGP SSL+ R + PV  VS+ DA AYC WAGRR
Sbjct:  156 YLASKDTVDAVDGESGYGRVKDAPHWMAVQGAYWRRPEGPGSSLRGRASHPVTHVSYNDAKAYCEWAGRR 225          
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Match: A0A7S2SNU0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNU0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.410e-18
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   16 YMLDAQTIKEAD--EGIGRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVAQVSWVDADAYCSWAGRR 219
            Y+    T+   D   G GRVK + HW+ V+GA WR+PEGP SSL+ R + PV  VS+ DA AYC WAGRR
Sbjct:  156 YLASKDTVDAVDGESGYGRVKDAPHWMAVQGAYWRRPEGPGSSLRGRASHPVTHVSYNDAKAYCEWAGRR 225          
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Match: A0A6J4KCL4_9ACTN (Sulfatase modifying factor 1 (C-alpha-formyglycine- generating enzyme 1) n=1 Tax=uncultured Friedmanniella sp. TaxID=335381 RepID=A0A6J4KCL4_9ACTN)

HSP 1 Score: 79.7 bits (195), Expect = 3.070e-16
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   43 EADEGIGRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVAQVSWVDADAYCSWAGRR 219
            E  + +GR  G+  W+GV GA+WR P+GPRS L  R + PV  VSW DA AYC WAGRR
Sbjct:   73 EPADVLGRAPGTPWWLGVRGADWRHPDGPRSDLSGRRDHPVVHVSWNDAQAYCVWAGRR 131          
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Match: A0A511MCN8_9NOCA (FGE-sulfatase domain-containing protein n=2 Tax=Nocardia TaxID=1817 RepID=A0A511MCN8_9NOCA)

HSP 1 Score: 79.3 bits (194), Expect = 6.180e-16
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   37 IKEADEG--IGRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVAQVSWVDADAYCSWAGRR 219
            +  ADE   +GR   S  WVGV+GA+WR PEG  SS+ +R + PV QVSW DA AYC WAGRR
Sbjct:   81 VLAADEHDLVGRAPQSPWWVGVKGASWRHPEGRHSSIDDRADHPVVQVSWHDATAYCDWAGRR 143          
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Match: A0A6H9WUK6_9MICO (Formylglycine-generating enzyme family protein n=3 Tax=Pseudoclavibacter endophyticus TaxID=1778590 RepID=A0A6H9WUK6_9MICO)

HSP 1 Score: 78.6 bits (192), Expect = 8.350e-16
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   37 IKEADEGI-GRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVAQVSWVDADAYCSWAGRR 219
            ++  DE + G+V G+  W+GV GA+WR+P GPRS L   G  PV  VSW DA AYC+WAGRR
Sbjct:   70 VQADDEDVMGKVPGTPWWLGVRGADWRRPGGPRSDLDELGEHPVVHVSWNDAVAYCAWAGRR 131          
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Match: UPI0016687081 (Uncharacterized protein n=2 Tax=Nonomuraea cavernae TaxID=2045107 RepID=UPI0016687081)

HSP 1 Score: 79.0 bits (193), Expect = 8.420e-16
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   16 YMLDAQTI-------KEADEGI--GRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVAQVSWVDADAYCSWAGRR 219
            Y+ +A+ I       + A  G+   RV G+  WVGVEGA WR PEGP SS+ +R N PV  VSW DA AY SWAG+R
Sbjct:   94 YVTEAERIGWSFVFRRFAGRGVMDARVPGAPWWVGVEGATWRSPEGPGSSVGDRQNHPVVHVSWHDAHAYASWAGKR 170          
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Match: A0A2D7F2A1_9BACT (Serine/threonine protein phosphatase n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A2D7F2A1_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 1.010e-15
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   19 MLDAQTIKEADEGIGRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVAQVSWVDADAYCSWAGRR 219
             L   T+++ ++   +V+G E WVG++GANWR+PEGP S++KNR + PV  VSW DA AY  WA +R
Sbjct:  114 QLKKSTVRKLNQSR-KVQGVEWWVGIDGANWRKPEGPGSNIKNRMHHPVVSVSWHDAHAYAQWANKR 179          
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Match: A0A7Y0QFG9_CELFI (Formylglycine-generating enzyme family protein n=2 Tax=Cellulomonas fimi TaxID=1708 RepID=A0A7Y0QFG9_CELFI)

HSP 1 Score: 78.2 bits (191), Expect = 1.830e-15
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   43 EADEGIGRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVAQVSWVDADAYCSWAGRR 219
            + D+ +GR   +  W+ V GA+WR PEG RSSL+ R + PV  VSW DA AYC+WAGRR
Sbjct:  117 DPDDVLGRAASTPWWLAVRGADWRHPEGRRSSLEGRDDHPVVHVSWNDAQAYCAWAGRR 175          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97888.31559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR0_ECTSI6.380e-4397.06Sulfatase-modifying factor 2 n=1 Tax=Ectocarpus si... [more]
A0A8J5XF83_DIALT1.400e-1956.52FGE-sulfatase domain-containing protein n=1 Tax=Di... [more]
A0A7S2WSR2_9STRA2.610e-1852.86Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SNU0_9STRA7.410e-1852.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6J4KCL4_9ACTN3.070e-1655.93Sulfatase modifying factor 1 (C-alpha-formyglycine... [more]
A0A511MCN8_9NOCA6.180e-1657.14FGE-sulfatase domain-containing protein n=2 Tax=No... [more]
A0A6H9WUK6_9MICO8.350e-1654.84Formylglycine-generating enzyme family protein n=3... [more]
UPI00166870818.420e-1650.65Uncharacterized protein n=2 Tax=Nonomuraea caverna... [more]
A0A2D7F2A1_9BACT1.010e-1549.25Serine/threonine protein phosphatase n=1 Tax=Punic... [more]
A0A7Y0QFG9_CELFI1.830e-1554.24Formylglycine-generating enzyme family protein n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97888contigEcto-sp8_S_contig97888:210..431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score144.8
Seed ortholog evalue1.5e-32
Seed eggNOG ortholog2880.D7FPR0
Model size222
KEGG koko:K13444
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Formylglycine-generating oxidase activity
EggNOG OGs2QVDG@2759,COG1262@1
Ec32 ortholog descriptionSulfatase-modifying factor 2 precursor
Ec32 orthologEc-20_001020.2
EC1.8.3.7
Cds size204
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145345.186829-CDS-Ecto-sp8_S_contig97888:209..4131681145345.186829-CDS-Ecto-sp8_S_contig97888:209..413Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97888 210..413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145345.208333-UTR-Ecto-sp8_S_contig97888:413..4311681145345.208333-UTR-Ecto-sp8_S_contig97888:413..431Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97888 414..431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97888.31559.1prot_Ecto-sp8_S_contig97888.31559.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97888 210..413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97888.31559.1

>prot_Ecto-sp8_S_contig97888.31559.1 ID=prot_Ecto-sp8_S_contig97888.31559.1|Name=mRNA_Ecto-sp8_S_contig97888.31559.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=68bp
MLDAQTIKEADEGIGRVKGSEHWVGVEGANWRQPEGPRSSLKNRGNVPVA
QVSWVDADAYCSWAGRR*
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mRNA from alignment at Ecto-sp8_S_contig97888:210..431-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97888.31559.1 ID=mRNA_Ecto-sp8_S_contig97888.31559.1|Name=mRNA_Ecto-sp8_S_contig97888.31559.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97888:210..431- (Ectocarpus species8 EcLAC_412)
CCGCGTCCCCCCAGGTATATGCTTGATGCACAGACGATCAAAGAGGCGGA TGAAGGTATCGGGCGGGTGAAAGGCTCAGAGCACTGGGTCGGGGTGGAAG GTGCGAACTGGCGACAGCCAGAGGGACCAAGGTCTTCGCTCAAGAACAGG GGGAACGTGCCTGTGGCGCAGGTTTCGTGGGTGGACGCTGACGCTTATTG CAGCTGGGCTGGCCGGCGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97888:210..431-

>mRNA_Ecto-sp8_S_contig97888.31559.1 ID=mRNA_Ecto-sp8_S_contig97888.31559.1|Name=mRNA_Ecto-sp8_S_contig97888.31559.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97888:210..431- (Ectocarpus species8 EcLAC_412)
ATGCTTGATGCACAGACGATCAAAGAGGCGGATGAAGGTATCGGGCGGGT
GAAAGGCTCAGAGCACTGGGTCGGGGTGGAAGGTGCGAACTGGCGACAGC
CAGAGGGACCAAGGTCTTCGCTCAAGAACAGGGGGAACGTGCCTGTGGCG
CAGGTTTCGTGGGTGGACGCTGACGCTTATTGCAGCTGGGCTGGCCGGCG
GTAA
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