mRNA_Ecto-sp8_S_contig97819.31554.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97819.31554.1
Unique NamemRNA_Ecto-sp8_S_contig97819.31554.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Match: A0A553P3B6_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P3B6_TIGCA)

HSP 1 Score: 229 bits (584), Expect = 2.870e-75
Identity = 110/142 (77.46%), Postives = 124/142 (87.32%), Query Frame = 1
Query:    1 MPSVSVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDEDWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVARKALQALEGLKLAEKDPNGGRRLTSQGRRDLDRIAAQLKAKK 426
            MPSVSVKDV QQ FT  LAA LKKSGKMKVPEW+DLVKTN  KELAPYDEDW+F+RCAS+ARH+Y+RSPVGV T+ KIYG+R NNGS P HW  G+G VARKALQ+LEG+K  EKDP+GGRRLTSQGRRDLDRIAAQ+K+ K
Sbjct:    1 MPSVSVKDVDQQKFTKGLAAFLKKSGKMKVPEWVDLVKTNVSKELAPYDEDWYFIRCASVARHIYVRSPVGVNTLTKIYGVRKNNGSKPSHWRSGSGSVARKALQSLEGMKWLEKDPSGGRRLTSQGRRDLDRIAAQVKSNK 142          
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Match: A0A0U2T895_9MAXI (40S ribosomal protein S19 n=2 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2T895_9MAXI)

HSP 1 Score: 227 bits (578), Expect = 2.360e-74
Identity = 112/143 (78.32%), Postives = 122/143 (85.31%), Query Frame = 1
Query:    1 MPSVSVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDEDWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVARKALQALEGLKLAEKDPNGGRRLTSQGRRDLDRIAAQLKAKKA 429
            MPSVSVKDV QQ FTVALAA LKKS KMKVPEW+DLVKT+  KELAPYDEDWF+ R AS+ARHMYIRSPVGV T+RKIYGIR NNGS P HW   +G VARKALQALE +KL EKD NGGR+LT QGRRDLDRIA+Q+K KKA
Sbjct:    1 MPSVSVKDVDQQKFTVALAAFLKKSAKMKVPEWVDLVKTSRAKELAPYDEDWFYTRTASVARHMYIRSPVGVNTLRKIYGIRKNNGSCPSHWVSSSGSVARKALQALESMKLVEKDSNGGRKLTGQGRRDLDRIASQIKQKKA 143          
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Match: A0A0U2VDI8_9MAXI (40S ribosomal protein S19 n=1 Tax=Centropages tenuiremis TaxID=544689 RepID=A0A0U2VDI8_9MAXI)

HSP 1 Score: 221 bits (562), Expect = 6.460e-72
Identity = 106/143 (74.13%), Postives = 121/143 (84.62%), Query Frame = 1
Query:    1 MPSVSVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDEDWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVARKALQALEGLKLAEKDPNGGRRLTSQGRRDLDRIAAQLKAKKA 429
            MP+VSVKDV QQ F VA AA LKKSGKM VPEW+D+VKT   KELAPYDEDWF+ R AS+ARH+YIR+PVGV T++KIYG+R NNGS PCHW+R +G VARK LQALE LKL EKD NGGRR+T QGRRDLDRIAAQ+K+ KA
Sbjct:    1 MPAVSVKDVDQQKFVVAFAAFLKKSGKMPVPEWVDIVKTGIAKELAPYDEDWFYTRTASVARHIYIRAPVGVKTVQKIYGVRKNNGSRPCHWSRSSGSVARKCLQALEKLKLIEKDGNGGRRMTGQGRRDLDRIAAQIKSSKA 143          
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Match: UPI000C7726C4 (40S ribosomal protein S19-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7726C4)

HSP 1 Score: 221 bits (562), Expect = 6.460e-72
Identity = 111/143 (77.62%), Postives = 119/143 (83.22%), Query Frame = 1
Query:    1 MPSVSVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDEDWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVARKALQALEGLKLAEKDPNGGRRLTSQGRRDLDRIAAQLKAKKA 429
            MP  SVKDV QQ F VALAA LKKSGKM VPEW+DLVKT   KELAPYDEDWFFVR AS+ARH+YIR+PVGV +IRKIYG+R NNGSSP HW   +G VAR+ALQALE LKL EKD NGGRRLT QGRRDLDRIAAQLK  KA
Sbjct:    1 MPPTSVKDVDQQKFVVALAAFLKKSGKMAVPEWVDLVKTGVSKELAPYDEDWFFVRTASVARHLYIRAPVGVKSIRKIYGVRKNNGSSPAHWCTSSGSVARRALQALEKLKLVEKDVNGGRRLTGQGRRDLDRIAAQLKYPKA 143          
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Match: A0A0U2T6Y6_ACAPC (40S ribosomal protein S19 n=2 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2T6Y6_ACAPC)

HSP 1 Score: 216 bits (551), Expect = 3.070e-70
Identity = 103/142 (72.54%), Postives = 117/142 (82.39%), Query Frame = 1
Query:    1 MPSVSVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDEDWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVARKALQALEGLKLAEKDPNGGRRLTSQGRRDLDRIAAQLKAKK 426
            MP +SVKDV QQ F  A AA LKKSGK+ VPEW+DLVK    KELAPYD+DWFF R AS+ARH+Y+R+PVGV+T+RKIYG+R NNGSSP HW R +G +ARKALQALE LKL EKD NGGRRLT QGRRDLDRIAAQ+K  K
Sbjct:    1 MPPISVKDVDQQKFVTAFAAFLKKSGKLPVPEWVDLVKDGTAKELAPYDDDWFFTRTASVARHLYMRAPVGVSTVRKIYGVRKNNGSSPAHWVRSSGSIARKALQALEKLKLVEKDANGGRRLTGQGRRDLDRIAAQIKKSK 142          
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Match: A0A1S3ID66_LINUN (40S ribosomal protein S19-like n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3ID66_LINUN)

HSP 1 Score: 206 bits (523), Expect = 5.650e-66
Identity = 95/138 (68.84%), Postives = 114/138 (82.61%), Query Frame = 1
Query:    1 MPSVSVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDEDWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVARKALQALEGLKLAEKDPNGGRRLTSQGRRDLDRIAAQL 414
            MP VSVKDV Q  FT AL A LKKSGK+KVPEW DLVK     EL+PYD+DWF++RCAS+ARH+Y+R+PVGV T+ K+YG R NNG++P HW RG+  VARK LQALEGLK+ E+D NGGRRL+SQGRRDLDRIA+Q+
Sbjct:    1 MPGVSVKDVDQHKFTKALGAFLKKSGKLKVPEWTDLVKLARFNELSPYDDDWFYIRCASIARHLYVRAPVGVGTLTKVYGARKNNGTAPSHWCRGSASVARKCLQALEGLKMVEQDQNGGRRLSSQGRRDLDRIASQI 138          
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Match: A0A226EQ47_FOLCA (Uncharacterized protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226EQ47_FOLCA)

HSP 1 Score: 203 bits (516), Expect = 9.430e-65
Identity = 99/136 (72.79%), Postives = 115/136 (84.56%), Query Frame = 1
Query:   13 SVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDEDWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVARKALQALEGLKLAEKDPNG-GRRLTSQGRRDLDRIAAQLK 417
            SVKDV Q  F  + A  LKKSGK+KVPEW+DLVKT+  KELAPYDEDWF++RCAS+ARH+YIRSP+G  TI KIYG+R  NG++P H+ RG+G VARKALQALEG+KL EK P+G GRRLTSQGRRDLDRIAAQLK
Sbjct:   12 SVKDVDQHKFVKSFAQFLKKSGKLKVPEWVDLVKTSKAKELAPYDEDWFYIRCASIARHLYIRSPIGTNTITKIYGLRKRNGATPSHFCRGSGSVARKALQALEGIKLVEKVPDGAGRRLTSQGRRDLDRIAAQLK 147          
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Match: C1BVK4_LEPSM (40S ribosomal protein S19 n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=C1BVK4_LEPSM)

HSP 1 Score: 200 bits (509), Expect = 7.180e-64
Identity = 98/139 (70.50%), Postives = 117/139 (84.17%), Query Frame = 1
Query:    1 MPSVSVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDEDWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVARKALQALEGLKLAEKDPNGGRRLTSQGRRDLDRIAAQLK 417
            M SVSVKDV QQ F  ALAA  KKSGK+K+P+++D VKTN  KELAPYDEDWF++RCAS+ RH+YIRSP+GV+T+RKIYG+R NNGS P HW+RG+G VAR ALQ LE LKL  K+ NGGR LTSQGR+DLDRIA+Q+K
Sbjct:    1 MVSVSVKDVDQQVFVKALAAFFKKSGKVKLPDYVDYVKTNIAKELAPYDEDWFYIRCASVVRHIYIRSPIGVSTVRKIYGVRKNNGSCPSHWSRGSGTVARDALQTLEELKLVRKE-NGGRVLTSQGRKDLDRIASQIK 138          
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Match: Q4GXP8_9COLE (Ribosomal protein S19e n=1 Tax=Eucinetus sp. APV-2005 TaxID=292446 RepID=Q4GXP8_9COLE)

HSP 1 Score: 201 bits (510), Expect = 7.980e-64
Identity = 95/141 (67.38%), Postives = 118/141 (83.69%), Query Frame = 1
Query:    1 MPSVSVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDEDWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVARKALQALEGLKLAEKDPNGGRRLTSQGRRDLDRIAAQLKAK 423
            MPSV++KDV QQ F  A A+ LKK+GK++VPEW+DLVKT   KELAPYD+DW+++RCA++ RH+YIRSPVGV ++ KI+G R +NG+ P H+ R  GGVARKALQ+LE LKL EK P GGRR+TSQGRRDLDRIAAQ+KAK
Sbjct:    1 MPSVTLKDVDQQKFVKAFASFLKKTGKLRVPEWVDLVKTARFKELAPYDQDWYYIRCAALVRHIYIRSPVGVGSVTKIFGGRKSNGTLPSHFCRSAGGVARKALQSLEQLKLIEKHPEGGRRITSQGRRDLDRIAAQIKAK 141          
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Match: UPI000719C622 (40S ribosomal protein S19-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C622)

HSP 1 Score: 199 bits (506), Expect = 2.580e-63
Identity = 96/141 (68.09%), Postives = 114/141 (80.85%), Query Frame = 1
Query:    1 MPSVSVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDEDWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVARKALQALEGLKLAEKDPNGGRRLTSQGRRDLDRIAAQLKAK 423
            MP VSVKDVSQ +F  A +A LKKSGK+KVPEW+DLVKT N KELAPYD+DW++ RCAS+ARH+YIRSPVGV  + KIYG R NNG+SP H+   +  +ARK L++LE LK+ EKD  GGRRLTSQGRRDLDRIA Q+K K
Sbjct:    1 MPGVSVKDVSQHEFVKAFSAFLKKSGKLKVPEWVDLVKTANYKELAPYDQDWYYTRCASVARHIYIRSPVGVGALIKIYGGRKNNGTSPSHYCVASSSIARKVLRSLEDLKMIEKDAAGGRRLTSQGRRDLDRIATQIKGK 141          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97819.31554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A553P3B6_TIGCA2.870e-7577.46Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A0U2T895_9MAXI2.360e-7478.3240S ribosomal protein S19 n=2 Tax=Pseudodiaptomus ... [more]
A0A0U2VDI8_9MAXI6.460e-7274.1340S ribosomal protein S19 n=1 Tax=Centropages tenu... [more]
UPI000C7726C46.460e-7277.6240S ribosomal protein S19-like n=1 Tax=Eurytemora ... [more]
A0A0U2T6Y6_ACAPC3.070e-7072.5440S ribosomal protein S19 n=2 Tax=Acartia pacifica... [more]
A0A1S3ID66_LINUN5.650e-6668.8440S ribosomal protein S19-like n=2 Tax=Lingula ung... [more]
A0A226EQ47_FOLCA9.430e-6572.79Uncharacterized protein n=1 Tax=Folsomia candida T... [more]
C1BVK4_LEPSM7.180e-6470.5040S ribosomal protein S19 n=2 Tax=Lepeophtheirus s... [more]
Q4GXP8_9COLE7.980e-6467.38Ribosomal protein S19e n=1 Tax=Eucinetus sp. APV-2... [more]
UPI000719C6222.580e-6368.0940S ribosomal protein S19-like n=1 Tax=Priapulus c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97819contigEcto-sp8_S_contig97819:43..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start1
Seed ortholog score198.4
Seed ortholog evalue2.3e-48
Seed eggNOG ortholog12957.ACEP13496-PA
Preferred nameRpS19a
Model size429
KEGG koko:K02966
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.Ribosomal protein S19e
EggNOG OGs3A1U1@33154,3BQPZ@33208,3D77R@33213,3SMWQ@50557,41ZDN@6656,46FKK@7399,COG2238@1,KOG3411@2759
Cds size429
COG Functional cat.J
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145344.8425553-CDS-Ecto-sp8_S_contig97819:42..4711681145344.8425553-CDS-Ecto-sp8_S_contig97819:42..471Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97819 43..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97819.31554.1prot_Ecto-sp8_S_contig97819.31554.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97819 43..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97819.31554.1

>prot_Ecto-sp8_S_contig97819.31554.1 ID=prot_Ecto-sp8_S_contig97819.31554.1|Name=mRNA_Ecto-sp8_S_contig97819.31554.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=143bp
MPSVSVKDVSQQDFTVALAAHLKKSGKMKVPEWIDLVKTNNRKELAPYDE
DWFFVRCASMARHMYIRSPVGVATIRKIYGIRSNNGSSPCHWARGNGGVA
RKALQALEGLKLAEKDPNGGRRLTSQGRRDLDRIAAQLKAKKA
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mRNA from alignment at Ecto-sp8_S_contig97819:43..471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97819.31554.1 ID=mRNA_Ecto-sp8_S_contig97819.31554.1|Name=mRNA_Ecto-sp8_S_contig97819.31554.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=429bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97819:43..471+ (Ectocarpus species8 EcLAC_412)
ATGCCTTCTGTCTCTGTAAAGGACGTCAGCCAGCAAGACTTCACCGTCGC CCTGGCTGCCCATCTCAAGAAGTCTGGCAAGATGAAGGTCCCCGAGTGGA TCGACCTTGTCAAGACCAACAACCGCAAGGAGTTGGCTCCTTATGACGAG GATTGGTTCTTTGTCAGGTGCGCCTCCATGGCCAGGCACATGTACATCAG GTCCCCTGTTGGAGTTGCCACCATCCGCAAGATCTACGGAATCCGTTCCA ACAACGGTTCCTCCCCTTGCCACTGGGCTCGCGGTAACGGCGGTGTTGCC AGGAAGGCTCTGCAAGCTCTGGAGGGACTGAAGCTAGCAGAGAAGGACCC CAATGGTGGGCGCAGACTGACTAGCCAGGGCCGCAGAGATCTGGACAGAA TTGCTGCTCAGCTCAAGGCTAAGAAGGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97819:43..471+

>mRNA_Ecto-sp8_S_contig97819.31554.1 ID=mRNA_Ecto-sp8_S_contig97819.31554.1|Name=mRNA_Ecto-sp8_S_contig97819.31554.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97819:43..471+ (Ectocarpus species8 EcLAC_412)
ATGCCTTCTGTCTCTGTAAAGGACGTCAGCCAGCAAGACTTCACCGTCGC
CCTGGCTGCCCATCTCAAGAAGTCTGGCAAGATGAAGGTCCCCGAGTGGA
TCGACCTTGTCAAGACCAACAACCGCAAGGAGTTGGCTCCTTATGACGAG
GATTGGTTCTTTGTCAGGTGCGCCTCCATGGCCAGGCACATGTACATCAG
GTCCCCTGTTGGAGTTGCCACCATCCGCAAGATCTACGGAATCCGTTCCA
ACAACGGTTCCTCCCCTTGCCACTGGGCTCGCGGTAACGGCGGTGTTGCC
AGGAAGGCTCTGCAAGCTCTGGAGGGACTGAAGCTAGCAGAGAAGGACCC
CAATGGTGGGCGCAGACTGACTAGCCAGGGCCGCAGAGATCTGGACAGAA
TTGCTGCTCAGCTCAAGGCTAAGAAGGCC
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