mRNA_Ecto-sp8_S_contig9779.31545.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE) HSP 1 Score: 265 bits (678), Expect = 7.770e-79 Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 2
Query: 2 TNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYELNPDKKPR 391
TNMCGRPVLVAL+PGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYEL PDKKPR
Sbjct: 2306 TNMCGRPVLVALIPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYELYPDKKPR 2435
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI) HSP 1 Score: 247 bits (630), Expect = 2.170e-72 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 2
Query: 2 TNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIY 361
TNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIY
Sbjct: 1557 TNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIY 1676
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Match: A0A7S3UUG2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUG2_HETAK) HSP 1 Score: 128 bits (321), Expect = 1.180e-33 Identity = 59/117 (50.43%), Postives = 85/117 (72.65%), Query Frame = 2
Query: 2 TNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAK 352
++ GRP+LVA++ +A R E E+ +T RC+ VLRR+F E V AP++ + WG D++A GSYS++ GS++EDM++L PV L FAGEAT+ RYPA+VHGA+LSG+REA+
Sbjct: 92 SHATGRPLLVAILAAGEAARLEAEAEEDTVKRCMDVLRRLFGEEYVQAPVNYEVTNWGQDRFAMGSYSYIARGSTTEDMKILAEPVQNKLFFAGEATNSRYPASVHGAYLSGIREAR 208
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Match: A0A7S3UVW7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVW7_HETAK) HSP 1 Score: 128 bits (321), Expect = 8.550e-32 Identity = 59/117 (50.43%), Postives = 85/117 (72.65%), Query Frame = 2
Query: 2 TNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAK 352
++ GRP+LVA++ +A R E E+ +T RC+ VLRR+F E V AP++ + WG D++A GSYS++ GS++EDM++L PV L FAGEAT+ RYPA+VHGA+LSG+REA+
Sbjct: 304 SHATGRPLLVAILAAGEAARLEAEAEEDTVKRCMDVLRRLFGEEYVQAPVNYEVTNWGQDRFAMGSYSYIARGSTTEDMKILAEPVQNKLFFAGEATNSRYPASVHGAYLSGIREAR 420
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Match: UPI000C87603C (lysine-specific histone demethylase 1 homolog 1-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C87603C) HSP 1 Score: 124 bits (311), Expect = 1.440e-29 Identity = 65/121 (53.72%), Postives = 80/121 (66.12%), Query Frame = 2
Query: 2 TNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPE--VTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMI 358
T++ G P+LVALV GE A + E S E R L VLR IF + VPAP+ +RWGSDK+ GSYS+V +GSS +D VL PVG + FAGEAT+ +YPAT+HGA LSG REA I
Sbjct: 529 TSVSGGPLLVALVAGESAIKFENSSPVEAVERVLGVLRGIFTPKGIEVPAPIQVVCTRWGSDKFTYGSYSYVAIGSSGDDYDVLAEPVGDRVFFAGEATNRKYPATMHGALLSGFREAANI 649
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Match: A0A7S0PUI6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PUI6_MICPS) HSP 1 Score: 117 bits (294), Expect = 1.850e-28 Identity = 60/120 (50.00%), Postives = 79/120 (65.83%), Query Frame = 2
Query: 5 NMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPE--VTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMI 358
++ G VL+ALV GE A ER A +TVLRRI+ VTVP P+ + + WG+D++A GSYS + VG++ ED L PVG L+FAGEAT R+PAT+HGA+LSG+REA I
Sbjct: 213 HLSGGAVLIALVSGEAALEFERSGAANVVAETMTVLRRIYERRGVTVPDPIDSKCACWGTDEFAYGSYSNISVGATGEDYDALAEPVGDGLYFAGEATMRRHPATMHGAFLSGMREAARI 332
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Match: B8AIT3_ORYSI (Amino_oxidase domain-containing protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8AIT3_ORYSI) HSP 1 Score: 115 bits (288), Expect = 1.110e-27 Identity = 59/121 (48.76%), Postives = 78/121 (64.46%), Query Frame = 2
Query: 2 TNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPE--VTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMI 358
+++ G P+L+ALV GE A E+ S E + L LR+IF + VP PL A +RWG+DK+ GSYS+V +GSS +D +L V + FAGEAT+ RYPAT+HGA LSG REA I
Sbjct: 77 SSVSGGPLLIALVAGESAIEFEKTSPAENVEKVLETLRKIFSPKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSSGDDYDILAESVCDRVFFAGEATNRRYPATMHGALLSGYREAANI 197
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Match: A0A1S3EH63_CICAR (lysine-specific histone demethylase 1 homolog 1 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S3EH63_CICAR) HSP 1 Score: 118 bits (296), Expect = 1.480e-27 Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 2
Query: 5 NMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIF-PE-VTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMI 358
++ G P+LVALV GE A R E S E+ R + +L+ IF P+ + VP P+ AA +RWG D +A GSYS+V+VGSS +D +L +G + FAGEATS +YPAT+HGA+LSG+REA I
Sbjct: 516 SVSGGPLLVALVAGEAAIRFEMMSPFESVKRVMKILKDIFHPKGIVVPDPVQAACTRWGKDPFANGSYSYVKVGSSGDDYDILSENIGGRVFFAGEATSRQYPATMHGAFLSGMREAANI 635
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Match: A0A1J6I837_NICAT (Lysine-specific histone demethylase 1-like 1 n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1J6I837_NICAT) HSP 1 Score: 118 bits (296), Expect = 1.510e-27 Identity = 58/121 (47.93%), Postives = 83/121 (68.60%), Query Frame = 2
Query: 2 TNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPE--VTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMI 358
+++ G P+L+ALV GE A + E+ S E+ GR L +L+ IF + VP PL A +RWG D++ GSYS+V +G+S +D +L VG + FAGEAT+ +YPAT+HGA+LSG+REA I
Sbjct: 572 SSVSGGPLLIALVAGEAAVKFEKMSPLESVGRVLEILKGIFSPKGIAVPDPLQAVCTRWGQDQFCYGSYSYVAIGASGDDYDILSESVGDRIFFAGEATNKQYPATMHGAFLSGMREAAHI 692
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Match: A0A484KZY6_9ASTE (SWIRM domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484KZY6_9ASTE) HSP 1 Score: 118 bits (296), Expect = 1.510e-27 Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 2
Query: 14 GRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIF-PE-VTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMI 358
G P+LVALV GE A ER S E GR L +LR IF P+ + VP P+ A +RWG DK++ GSYS+V +GSS +D +L V L FAGEAT+ +YPAT+HGA+LSG+REA I
Sbjct: 570 GGPLLVALVAGEAAIGFERMSPLEAVGRVLDILRGIFGPKGIAVPDPIQAVCTRWGQDKFSHGSYSYVAIGSSGDDYDILAESVAGRLFFAGEATNRQYPATMHGAFLSGMREAAHI 686 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9779.31545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9779.31545.1 >prot_Ecto-sp8_S_contig9779.31545.1 ID=prot_Ecto-sp8_S_contig9779.31545.1|Name=mRNA_Ecto-sp8_S_contig9779.31545.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=187bp DQYVRPAGASRARPGRAGVSRGEGIRGGNGRAVPDGIAPHIPGGDSPGSPback to top mRNA from alignment at Ecto-sp8_S_contig9779:2654..5255+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9779.31545.1 ID=mRNA_Ecto-sp8_S_contig9779.31545.1|Name=mRNA_Ecto-sp8_S_contig9779.31545.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2602bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9779:2654..5255+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9779:2654..5255+ >mRNA_Ecto-sp8_S_contig9779.31545.1 ID=mRNA_Ecto-sp8_S_contig9779.31545.1|Name=mRNA_Ecto-sp8_S_contig9779.31545.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9779:2654..5255+ (Ectocarpus species8 EcLAC_412)back to top |