mRNA_Ecto-sp8_S_contig9777.31543.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9777.31543.1
Unique NamemRNA_Ecto-sp8_S_contig9777.31543.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Match: D7G206_ECTSI (CHY-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G206_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.810e-14
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:   13 IINAKVSIQFPCCKRWYECPECHDERENHP 102
            ++  +VSIQFPCCKRWYECPECHDERENHP
Sbjct:    2 LVPGQVSIQFPCCKRWYECPECHDERENHP 31
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BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Match: F2UL15_SALR5 (CHY zinc finger domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UL15_SALR5)

HSP 1 Score: 68.9 bits (167), Expect = 4.820e-14
Identity = 23/34 (67.65%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHP 102
            MCKHI+NA+V+I+ PCCK+WY+CPECH+E+ +HP
Sbjct:    1 MCKHILNAQVAIRAPCCKKWYDCPECHEEKADHP 34
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BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Match: W4JMI2_HETIT (CHY-type domain-containing protein n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4JMI2_HETIT)

HSP 1 Score: 69.3 bits (168), Expect = 9.300e-14
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHP 102
            MCKHI+NA+VSI+ PCCKRW++CPECH E E+HP
Sbjct:    1 MCKHILNAQVSIRAPCCKRWFDCPECHAESESHP 34
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BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Match: A0A1Y1V4F6_9FUNG (CHY-type domain-containing protein n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1V4F6_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 1.310e-13
Identity = 23/34 (67.65%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHP 102
            MCKHI+NA+VSI+ PCCK+W++C ECH+E++NHP
Sbjct:    1 MCKHILNAQVSIRAPCCKKWFDCAECHNEQQNHP 34
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BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Match: UPI000444948B (hypothetical protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444948B)

HSP 1 Score: 67.8 bits (164), Expect = 1.310e-13
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHP 102
            MCKH++NA+VSI+ PCCK+WY+CPECH E ++HP
Sbjct:    1 MCKHVLNAQVSIRAPCCKQWYDCPECHAEAQSHP 34
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BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Match: G2R906_THETT (CHY-type domain-containing protein n=2 Tax=Thermothielavioides terrestris TaxID=2587410 RepID=G2R906_THETT)

HSP 1 Score: 67.8 bits (164), Expect = 1.650e-13
Identity = 23/34 (67.65%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHP 102
            MCKHI+NA+VSI+ PCC++W++CPECH E+E+HP
Sbjct:    1 MCKHILNAQVSIRSPCCRKWFDCPECHAEQESHP 34
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Match: G0SHF7_CHATD (CHY-type domain-containing protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0SHF7_CHATD)

HSP 1 Score: 67.4 bits (163), Expect = 2.030e-13
Identity = 22/34 (64.71%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHP 102
            MCKHI+NA+VS++ PCC++W++CPECH E+E+HP
Sbjct:    1 MCKHILNAQVSVRSPCCRKWFDCPECHAEQEDHP 34
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Match: A9VDH9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VDH9_MONBE)

HSP 1 Score: 67.8 bits (164), Expect = 2.060e-13
Identity = 23/33 (69.70%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENH 99
            MCKHI+NA+V+++ PCCK+WY+CPECHDE E+H
Sbjct:    1 MCKHILNAQVAVRAPCCKKWYDCPECHDEFESH 33
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Match: A0A194URQ5_9PEZI (CHY-type domain-containing protein n=4 Tax=Valsa TaxID=83174 RepID=A0A194URQ5_9PEZI)

HSP 1 Score: 67.0 bits (162), Expect = 2.950e-13
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHP 102
            MCKHI+NA+VSI+ PCC++W++C ECH E+ENHP
Sbjct:    1 MCKHILNAQVSIRSPCCRKWFDCVECHQEQENHP 34
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Match: A0A423XEB1_9PEZI (CHY-type domain-containing protein n=1 Tax=Cytospora leucostoma TaxID=1230097 RepID=A0A423XEB1_9PEZI)

HSP 1 Score: 67.0 bits (162), Expect = 2.950e-13
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHP 102
            MCKHI+NA+VSI+ PCC++W++C ECH E+ENHP
Sbjct:    1 MCKHILNAQVSIRSPCCRKWFDCVECHQEQENHP 34
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9777.31543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G206_ECTSI2.810e-1483.33CHY-type domain-containing protein n=2 Tax=Ectocar... [more]
F2UL15_SALR54.820e-1467.65CHY zinc finger domain-containing protein n=1 Tax=... [more]
W4JMI2_HETIT9.300e-1473.53CHY-type domain-containing protein n=1 Tax=Heterob... [more]
A0A1Y1V4F6_9FUNG1.310e-1367.65CHY-type domain-containing protein n=3 Tax=Neocall... [more]
UPI000444948B1.310e-1367.65hypothetical protein n=1 Tax=Stereum hirsutum (str... [more]
G2R906_THETT1.650e-1367.65CHY-type domain-containing protein n=2 Tax=Thermot... [more]
G0SHF7_CHATD2.030e-1364.71CHY-type domain-containing protein n=1 Tax=Chaetom... [more]
A9VDH9_MONBE2.060e-1369.70Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A194URQ5_9PEZI2.950e-1367.65CHY-type domain-containing protein n=4 Tax=Valsa T... [more]
A0A423XEB1_9PEZI2.950e-1367.65CHY-type domain-containing protein n=1 Tax=Cytospo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9777contigEcto-sp8_S_contig9777:6007..6980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop0
Start1
Seed ortholog score68.6
Seed ortholog evalue6.6e-10
Seed eggNOG ortholog984962.XP_009553173.1
Model size102
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:1990542
Exons2
EggNOG free text desc.CHY zinc finger
EggNOG OGs229IW@155619,3A3N6@33154,3H5ER@355688,3P3UA@4751,3V1A8@5204,KOG1940@1,KOG1940@2759
Cds size102
COG Functional cat.S
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145344.006023-CDS-Ecto-sp8_S_contig9777:6006..60331681145344.006023-CDS-Ecto-sp8_S_contig9777:6006..6033Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9777 6007..6033 +
1681145344.0226426-CDS-Ecto-sp8_S_contig9777:6905..69801681145344.0226426-CDS-Ecto-sp8_S_contig9777:6905..6980Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9777 6906..6980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9777.31543.1prot_Ecto-sp8_S_contig9777.31543.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9777 6007..6980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9777.31543.1

>prot_Ecto-sp8_S_contig9777.31543.1 ID=prot_Ecto-sp8_S_contig9777.31543.1|Name=mRNA_Ecto-sp8_S_contig9777.31543.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=34bp
MCKHIINAKVSIQFPCCKRWYECPECHDERENHP
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mRNA from alignment at Ecto-sp8_S_contig9777:6007..6980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9777.31543.1 ID=mRNA_Ecto-sp8_S_contig9777.31543.1|Name=mRNA_Ecto-sp8_S_contig9777.31543.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=974bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9777:6007..6980+ (Ectocarpus species8 EcLAC_412)
ATGTGTAAGCACATCATCAACGCGAAGGTACCCCGCATTGTAGTGGAGTA
CTACAACGCAAGTATATGCATATGTACAAGCGCATACACTTTTGAAAAAG
TCGAGAAAGACTGCTTGTATCTGCGTACTACACGGACGGGTGGCCAAAGC
AGGTTGTATCTGGTGCACAACCTCCCCACAACCTCTCTAGGGTCAGGTTG
TACGCCGACATATGAAGCTAGCCCCGCATCACGGATTGCGACGTTGGTCC
ATTCAATAGGGCGGACGGGCAGCGTAGACTACATGTTGTCCAAGGTCGAT
CCCCAACGTCCCAACCTGACCCCGGGGAGGTTGGGCACCACTTACAACCT
CCCTTTGGCCACCCCTGTACTGTATACAAGTAGACCTTTCTCTTTTGTGT
GTGATCGCACTGCTGTGTCGCAACACTGGAGAAGAAGTTCACCAAAGTGG
TAGACTATGTAGACTGCGACGGCGGTAACATATCGGTGTGCAGTCTACAA
AAATTCTCTTTAGGGACCAGACACAGATCAAGCCACGGACAGGGAATTCA
TTCGCGACTATATATGCAGACGGAGGTAGGTCACGAAGGAGGCCACCCCA
TCGTGTCAGTGAAATAGTGTATCTCCCCGAAATGCGCAGGACATGCATGT
CCGTCCGTGGAGAAGAGGTCACGTCTGGGACAAATCTTGGCGGTAGAAGT
CCAAGATGTATCGTTGAGTCATAGCGCAGCCTACAGTAGATACCGGCAAT
TTCTTGAAGATCGCGTAGCGTTCGTTGTGGTTCGAGCGCGCCACTTGTCT
GCACGGACACCGCCGCCGTGTTACAAGGAGTCGCACATGCGTTACACCGA
CCTGCAAGCCCGGCGATCGCAACAAAAGCTCATGCTTGTCCCCGGCCAGG
TCAGCATCCAATTCCCGTGTTGTAAGAGATGGTACGAGTGCCCGGAGTGT
CACGACGAGCGTGAGAATCACCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9777:6007..6980+

>mRNA_Ecto-sp8_S_contig9777.31543.1 ID=mRNA_Ecto-sp8_S_contig9777.31543.1|Name=mRNA_Ecto-sp8_S_contig9777.31543.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9777:6007..6980+ (Ectocarpus species8 EcLAC_412)
ATGTGTAAGCACATCATCAACGCGAAGGTCAGCATCCAATTCCCGTGTTG
TAAGAGATGGTACGAGTGCCCGGAGTGTCACGACGAGCGTGAGAATCACC
CC
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